254780723

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 3/137 (2%)

Query: 2   FDVNSWFLVGLITVSVFCFLYAIFYNVIN-PGDSKSQDNAKVVRADR--VIPTANTKRRK 58
            D+NS+ LVGLI++SVF  LY + +        S+S+D  KV++  +   IP+A  KRRK
Sbjct: 3   LDINSFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRK 62

Query: 59  ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
            LR+A+ KIEL+HK K GNTKS+ SLIS SG+P SK+H+YI SCV+G + G++SL L SS
Sbjct: 63  VLRDAMDKIELSHKEKFGNTKSLSSLISYSGIPFSKEHFYIFSCVMGLVFGIISLALFSS 122

Query: 119 FFTFLCVSVSSALVFPR 135
           FF  LCV +SSALV PR
Sbjct: 123 FFVSLCVCLSSALVVPR 139

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 73/140 (52%), Gaps = 8/140 (5%)

Query: 1   MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK---RR 57
           M   ++  + GL+ V+  C  YA+   ++ P ++++    + + A R  P    +   RR
Sbjct: 1   MTSFDALIVAGLLAVTASCLAYAVVVPLL-PSEARAAKRQQAI-AGRRSPMERVQAVNRR 58

Query: 58  KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
           +++ ++++++E   +       S++  I+ +GL I+K  +Y+ S V+  +  V+ L +S 
Sbjct: 59  EQVAKSLKELEAKERKA---RPSLELRITQAGLSITKSQFYVASGVLAGVSLVMGLVMSG 115

Query: 118 SFFTFLCVSVSSALVFPRFF 137
           S  T + ++ ++ L  P++ 
Sbjct: 116 SPLTAIALAFAAGLGLPQWL 135

Species: Methylobacterium sp. 4-46
Genus: Methylobacterium
Family: Methylobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 11/137 (8%)

Query: 12  LITVSVFCFLYAIFYNVINPGDSKSQ---------DNAKVVRADRVIPTANTKRRKELRE 62
           L  V+     YA+FY  +   D  ++             + R++R       KRRK+L++
Sbjct: 14  LAVVACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRRKQLQD 73

Query: 63  AIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
            I+ +E   K +  N K   +  L++ +GL ++ Q +YI S V  F+   ++L   +   
Sbjct: 74  NIKDLEARQKQREKNQKYPPLRILLAQAGLSLTLQKFYIYSGVAAFLATFIALIFGAPLL 133

Query: 121 TFLCVSVSSALVFPRFF 137
               ++++     PR+F
Sbjct: 134 FLPGIAIAGFFGLPRWF 150

Species: Ochrobactrum anthropi
Genus: Ochrobactrum
Family: Brucellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 12  LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR-----ADRVIPTANTKRRKELREAIQK 66
           L   S+   +YA+F  V++    + Q   ++       +DR       KRRK +++ +++
Sbjct: 20  LAAFSIGGVIYALFEPVLSGSKRREQRLGQIAARPQAASDRRPVRDAEKRRKSVQDQLKE 79

Query: 67  IELNHKA--KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLC 124
            E   KA  K  N+ ++ + +  +GL   ++H+ I S V G +  +L   L+ S    L 
Sbjct: 80  FEEKQKARQKRANSLTLTNRLEQAGLDWERKHFIIFSIVSGLVFLILGFLLTRSPILTLA 139

Query: 125 VSVSSALVFPRFF 137
           ++    L FPR++
Sbjct: 140 IAFVGGLGFPRWY 152

Species: Polymorphum gilvum
Genus: 
Family: 
Order: 
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 16/141 (11%)

Query: 9   LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA---DRVIPTAN-------TKRRK 58
           ++GL  +S     Y + Y+ I  GD K+++  K V+A   DR   +A         KRRK
Sbjct: 11  IIGLAALSAGALGYGVLYSRIE-GDRKAENRVKRVKAAETDRSKASAARDRLAEANKRRK 69

Query: 59  ELREAIQKIELNHKAKIGNTKSIDSL---ISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
            ++++++   L+ K K  + K+   L   I  +GLP S   +Y+ S V+G + G++    
Sbjct: 70  SVQDSLK--TLDEKNKENDKKTSPPLKDKIGQAGLPFSLGQFYMISLVLGLVAGLVGFVA 127

Query: 116 SSSFFTFLCVSVSSALVFPRF 136
             S      +++      PR+
Sbjct: 128 YGSPLVAAGIAIIFGAGVPRW 148

Species: Hoeflea phototrophica
Genus: Hoeflea
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 29  INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
           IN   S   D  KV  A DRV     +KRRK +++ ++ +E     K   T S+ S +  
Sbjct: 41  INRVKSAEVDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98

Query: 88  SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
           +GLPIS   +Y+ S +   +  +++  + +S+   + ++V + L  PR+
Sbjct: 99  AGLPISVGKFYLISAIFASVLLIVAFIVGASWMVMIGIAVVAGLGLPRW 147

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 29  INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
           IN   S   D  KV  A DRV     +KRRK +++ ++ +E     K   T S+ S +  
Sbjct: 41  INRVKSAESDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKSRLVQ 98

Query: 88  SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
           +GL I+   +Y+ S V   +  +++L + +S    + ++V + L  PR+
Sbjct: 99  AGLTITAAKFYLISAVFASVLLLIALVVGASLMVMIGIAVVAGLGLPRW 147

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 29  INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
           IN   S   D  KV  A DRV     +KRRK +++ ++ +E     K   T S+ S +  
Sbjct: 41  INRVKSAEVDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98

Query: 88  SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
           +GLPIS   +Y+ S V   +   ++  + +S+   + ++V + L  PR+
Sbjct: 99  AGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLPRW 147

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 29  INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
           IN   S   D  KV  A DRV     +KRRK +++ ++ +E     K   T S+ S +  
Sbjct: 41  INRVKSAEVDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98

Query: 88  SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
           +GLPIS   +Y+ S V   +   ++  + +S+   + ++V + L  PR+
Sbjct: 99  AGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLPRW 147

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 18  FCFLYAIFYNVINPGD-----SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK 72
           + FL+    N    G        ++ +  +V+A R   T   KRRK +++++++++   K
Sbjct: 24  YAFLFTQISNEKQAGKRLETIKTAETDRSIVKATRDRATDAAKRRKSVQDSLKELDEKQK 83

Query: 73  AKIGNTKS--IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
            K    K   + + +  +G+ +S + +YI S + G    V++  + +       V ++ A
Sbjct: 84  TKDSAIKKPPLKAQLRQAGMKVSIERFYIYSAICGLALTVVAFVVGAPMLVLPGVLLAGA 143

Query: 131 LVFPRFF 137
           L  PR+F
Sbjct: 144 LGLPRWF 150

Species: Mesorhizobium loti
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

Probab=99.57  E-value=1.3e-14  Score=110.21  Aligned_cols=116  Identities=18%  Similarity=0.259  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6999999999999999999996306047789999999775420-----12205899999999999999999962237989
Q gi|254780723|r    6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRV-----IPTANTKRRKELREAIQKIELNHKAKIGNTKS   80 (137)
Q Consensus         6 ~l~~~gL~~vavg~laya~~yp~ls~~~~~aqrr~~~~~a~R~-----~~~~~~kRRksvq~sLKelE~rqk~~~k~~~s   80 (137)
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~-~~~~r~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-------   73 (309)
T COG4965           2 ILFYLVLAALSALLLAYAFLGWR-SKSKRARIRNRRIKAAATDLSSALALRDLSSRRLSAQDSLKRLDRKQPR-------   73 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCHHHHHHHHCCC-------
T ss_conf             12999999999999999998488-8788988877889997733401788547023046554046667652244-------


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899999619997899999999999999999999957118999999999974887659
Q gi|254780723|r   81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRFF  137 (137)
Q Consensus        81 l~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g~~~l~a~g~a~~~glGLPRw~  137 (137)
T Consensus        74 ------q~G~~~~~~~~~~l~~~~~l~~~~v~-~~~~~l~v~~-~~~~~~~llp~~~  122 (309)
T COG4965          74 ------QAGLRVSLARLILLSAGAGLAVALVA-WLGLSLLVAL-VALIGAALLPRLV  122 (309)
T ss_pred             ------CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHH-HHHHHHHHHHHHH
T ss_conf             ------56656647999999999999999999-9861389999-9999999999999

Probab=95.43  E-value=0.16  Score=30.01  Aligned_cols=86  Identities=12%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HH----CC
Q ss_conf             699999999999999999999630604778999999--97754201220589999999999999999996--22----37
Q gi|254780723|r    6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAK--VVRADRVIPTANTKRRKELREAIQKIELNHKA--KI----GN   77 (137)
Q Consensus         6 ~l~~~gL~~vavg~laya~~yp~ls~~~~~aqrr~~--~~~a~R~~~~~~~kRRksvq~sLKelE~rqk~--~~----k~   77 (137)
T Consensus        24 rlv~~lL~~~~V~~lGy~f~~--s~k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs~tE  101 (211)
T COG3167          24 RLVFCLLAVAAVLGLGYAFYL--SGKLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPSDTE  101 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999999999985--407888999987799999999999998735599999999999999999985886210


Q ss_pred             CCCHHHHHHHCCCCCC
Q ss_conf             9898999996199978
Q gi|254780723|r   78 TKSIDSLISCSGLPIS   93 (137)
Q Consensus        78 ~~sl~~rL~QAGL~~s   93 (137)
T Consensus       102 mp~Ll~dv~q~Gl~sg  117 (211)
T COG3167         102 MPNLLADVNQAGLSSG  117 (211)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             4679999987502247

Probab=90.27  E-value=1.3  Score=24.31  Aligned_cols=30  Identities=30%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             CCHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
Q ss_conf             970346999999999-999999999996306
Q gi|254780723|r    1 MFDVNSWFLVGLITV-SVFCFLYAIFYNVIN   30 (137)
Q Consensus         1 m~~~~~l~~~gL~~v-avg~laya~~yp~ls   30 (137)
T Consensus        18 ~~~~n~Tl~~q~i~FliL~~lL~kf~~~Pi~   48 (156)
T CHL00118         18 LFDFNATLPLMALQFLLLMVLLNAIFYKPIG   48 (156)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7086589999999999999999999898999

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 42  VVRADRVI--PTANTKRRKELREAIQKIELNHKAKI 75
           + +ADR+   P +  K R+E R+ +Q  EL+  +K+
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQ--ELDAASKV 107