254780723
hypothetical protein CLIBASIA_03050
GeneID in NCBI database: | 8209728 | Locus tag: | CLIBASIA_03050 |
Protein GI in NCBI database: | 254780723 | Protein Accession: | YP_003065136.1 |
Gene range: | +(544288, 544701) | Protein Length: | 137aa |
Gene description: | hypothetical protein | ||
COG prediction: | none | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 137 | hypothetical protein CLIBASIA_03050 [Candidatus Liberib | |||
315121887 | 328 | pilus assembly protein [Candidatus Liberibacter solanac | 1 | 1e-29 | |
170740617 | 322 | type II secretion system protein [Methylobacterium sp. | 1 | 9e-06 | |
153008063 | 337 | type II secretion system protein [Ochrobactrum anthropi | 1 | 1e-04 | |
328545275 | 339 | Bacterial type II secretion system protein F domain [po | 1 | 3e-04 | |
163757631 | 336 | hypothetical protein HPDFL43_19512 [Hoeflea phototrophi | 1 | 6e-04 | |
218461009 | 335 | probable pilus assembly protein [Rhizobium etli Kim 5] | 1 | 6e-04 | |
116249985 | 335 | pilus assembly protein [Rhizobium leguminosarum bv. vic | 1 | 9e-04 | |
190889885 | 335 | pilus assembly protein [Rhizobium etli CIAT 652] Length | 1 | 0.001 | |
218516696 | 335 | probable pilus assembly protein [Rhizobium etli 8C-3] L | 1 | 0.001 | |
13474664 | 337 | hypothetical protein mlr5603 [Mesorhizobium loti MAFF30 | 1 | 0.002 |
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 | Back alignment and organism information |
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Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 3/137 (2%) Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVIN-PGDSKSQDNAKVVRADR--VIPTANTKRRK 58 D+NS+ LVGLI++SVF LY + + S+S+D KV++ + IP+A KRRK Sbjct: 3 LDINSFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRK 62 Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118 LR+A+ KIEL+HK K GNTKS+ SLIS SG+P SK+H+YI SCV+G + G++SL L SS Sbjct: 63 VLRDAMDKIELSHKEKFGNTKSLSSLISYSGIPFSKEHFYIFSCVMGLVFGIISLALFSS 122 Query: 119 FFTFLCVSVSSALVFPR 135 FF LCV +SSALV PR Sbjct: 123 FFVSLCVCLSSALVVPR 139 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 322 | Back alignment and organism information |
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>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 337 | Back alignment and organism information |
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>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum gilvum SL003B-26A1] Length = 339 | Back alignment and organism information |
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>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] Length = 336 | Back alignment and organism information |
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>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5] Length = 335 | Back alignment and organism information |
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>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335 | Back alignment and organism information |
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>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652] Length = 335 | Back alignment and organism information |
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>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3] Length = 335 | Back alignment and organism information |
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>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099] Length = 337 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 137 | hypothetical protein CLIBASIA_03050 [Candidatus Liberib | ||
COG4965 | 309 | TadB Flp pilus assembly protein TadB [Intracellular tra | 99.57 | |
COG3167 | 211 | PilO Tfp pilus assembly protein PilO [Cell motility and | 95.43 | |
CHL00118 | 156 | atpG ATP synthase CF0 B' subunit; Validated | 90.27 |
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion] | Back alignment and domain information |
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>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
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>CHL00118 atpG ATP synthase CF0 B' subunit; Validated | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 137 | hypothetical protein CLIBASIA_03050 [Candidatus Liberib | ||
3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated PIT, | 0.003 |
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
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Score = 35.7 bits (81), Expect = 0.003 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%) Query: 42 VVRADRVI--PTANTKRRKELREAIQKIELNHKAKI 75 + +ADR+ P + K R+E R+ +Q EL+ +K+ Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQ--ELDAASKV 107 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00