Query gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 137 No_of_seqs 72 out of 74 Neff 4.5 Searched_HMMs 33803 Date Wed Jun 1 14:22:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780723.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2zxe_A Na, K-ATPase alpha sub 58.5 14 0.0004 17.8 9.8 121 4-129 15-148 (154) 2 >1omh_A TRWC protein; protein- 34.1 33 0.00098 15.4 4.5 34 52-85 8-55 (70) 3 >1czq_A IQN17, fusion protein 30.5 34 0.001 15.3 2.3 18 56-73 2-19 (46) 4 >3ixz_A Potassium-transporting 23.7 50 0.0015 14.3 6.3 108 4-128 8-117 (124) 5 >1ffk_W Ribosomal protein L37A 22.2 51 0.0015 14.2 1.9 18 59-76 12-29 (61) 6 >1wpg_A Sarcoplasmic/endoplasm 20.9 58 0.0017 13.9 6.8 39 73-116 90-128 (157) 7 >1mzb_A Ferric uptake regulati 16.6 72 0.0021 13.3 3.7 41 55-99 18-58 (86) 8 >2zkr_z 60S ribosomal protein 15.7 76 0.0022 13.2 2.2 18 59-76 21-38 (71) 9 >2ex2_A Penicillin-binding pro 14.8 65 0.0019 13.6 1.0 14 80-93 87-100 (123) 10 >2jg6_A DNA-3-methyladenine gl 13.1 49 0.0015 14.3 0.0 14 81-94 35-48 (121) No 1 >>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338) Probab=58.47 E-value=14 Score=17.76 Aligned_cols=121 Identities=13% Similarity=0.044 Sum_probs=61.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHH----------HH--HHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 346999999999999999999996306047789-999999----------77--54201220589999999999999999 Q gi|254780723|r 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKS-QDNAKV----------VR--ADRVIPTANTKRRKELREAIQKIELN 70 (137) Q Consensus 4 ~~~l~~~gL~~vavg~laya~~yp~ls~~~~~a-qrr~~~----------~~--a~R~~~~~~~kRRksvq~sLKelE~r 70 (137) ++.++...|...++.++.-.++.+....+.... -...-+ .. ++.+.+..-.+=++.++..+-.+.+- T Consensus 15 f~~~~~~iLl~aa~is~~~~~~~~~~~~~~~~~~~~~~i~I~~iv~in~~i~f~qE~ka~k~~~aL~~~~~T~lgkI~~l 94 (154) T 2zxe_A 15 LFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVRTVMGRIATL 94 (154) T ss_dssp TTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSGSHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 96729999999999999999998603566652018788897899999999999999999999999754593302166662 Q ss_pred HHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99622379898999996199978999999999999999999999571189999999999 Q gi|254780723|r 71 HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSS 129 (137) Q Consensus 71 qk~~~k~~~sl~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g~~~l~a~g~a~~~ 129 (137) -.+.+..+.+++..+++-+ +.|-.+..+++++.+++.++.|.++.-++-.+++- T Consensus 95 v~~~~~~~t~l~~~idr~~-----~~~~~~~l~~~~~~f~~~~~~~~~~~~a~~~aisl 148 (154) T 2zxe_A 95 ASGLEVGRTPIAIEIEHFI-----HIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGI 148 (154) T ss_dssp HHHSCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 1201123348999999999-----99999999999999988887333088999999999 No 2 >>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} (A:224-293) Probab=34.06 E-value=33 Score=15.39 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=20.6 Q ss_pred CHHHHHHHHHHHHHH---------HHHHHHHH---H--CCCCCHHHHH Q ss_conf 058999999999999---------99999962---2--3798989999 Q gi|254780723|r 52 ANTKRRKELREAIQK---------IELNHKAK---I--GNTKSIDSLI 85 (137) Q Consensus 52 ~~~kRRksvq~sLKe---------lE~rqk~~---~--k~~~sl~~rL 85 (137) .-++||.+|++.+++ .+.++... + |..+++.... T Consensus 8 ~FSkR~~qI~~~~~~~G~~~~~at~~~r~~A~l~TR~~K~~~~~~~l~ 55 (70) T 1omh_A 8 GFSKRTEQIAEWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALR 55 (70) T ss_dssp TTCHHHHHHHHHHHHHTCCTTTCCHHHHHHHHHHTCCCCCCCCHHHHH T ss_pred HHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 857389999999998189988679999999998574778899989999 No 3 >>1czq_A IQN17, fusion protein between the hydrophobic pocket of HIV GP41 and GCN4-PIQI; envelope glycoprotein, coiled coil, viral protein/viral protein inhibitor complex; HET: DAR DHI DTR; 1.50A {Saccharomyces cerevisiae} (A:) Probab=30.46 E-value=34 Score=15.29 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999996 Q gi|254780723|r 56 RRKELREAIQKIELNHKA 73 (137) Q Consensus 56 RRksvq~sLKelE~rqk~ 73 (137) |-||+||...|++.+++. T Consensus 2 RMKQiEDkiEEilSK~yh 19 (46) T 1czq_A 2 RMKQIEDKIEEIESKQKK 19 (46) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 166888999999998888 No 4 >>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343) Probab=23.75 E-value=50 Score=14.28 Aligned_cols=108 Identities=8% Similarity=-0.000 Sum_probs=56.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 346999999999999999999996306047789999--999775420122058999999999999999999622379898 Q gi|254780723|r 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN--AKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81 (137) Q Consensus 4 ~~~l~~~gL~~vavg~laya~~yp~ls~~~~~aqrr--~~~~~a~R~~~~~~~kRRksvq~sLKelE~rqk~~~k~~~sl 81 (137) ++.++..-|...++.|+.-.++.+.-+ ++....+. .-+.-..=- +...+-=..+++.+|--.+.|| T Consensus 8 f~~~~~iiL~vaaiis~~~~~i~~~~~-~~~~~~~~~~~ivI~~iv~-----------in~~igf~QE~kAeka~~~TPL 75 (124) T 3ixz_A 8 LAGGLQCLMWVAAAICLIAFAIQASEG-DLTTDDNLYLALALIAVVV-----------VTGCFGYYQEFKSTNIIEKTPI 75 (124) T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCCHH T ss_conf 866499999999999999999872357-6665125999999999999-----------9999999999999999957878 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 99999619997899999999999999999999957118999999999 Q gi|254780723|r 82 DSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128 (137) Q Consensus 82 ~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g~~~l~a~g~a~~ 128 (137) ..+|++=|. ..-++..+++.+.+.+.++.|.+++-++..+++ T Consensus 76 q~~l~~~~~-----~l~~~a~~~~~~~f~~~~~~g~~~~~~~~~ai~ 117 (124) T 3ixz_A 76 AIEIEHFVD-----IIAGLAILFGATFFIVAMCIGYTFLRAMVFFMA 117 (124) T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999-----999999999999876333135317899999999 No 5 >>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61) Probab=22.22 E-value=51 Score=14.25 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999996223 Q gi|254780723|r 59 ELREAIQKIELNHKAKIG 76 (137) Q Consensus 59 svq~sLKelE~rqk~~~k 76 (137) ++.+..|+||.+|+++.. T Consensus 12 slRK~vkkie~~q~~ky~ 29 (61) T 1ffk_W 12 KIRVRVRDVEIKHKKKYK 29 (61) T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 699999999998715745 No 6 >>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} (A:43-118,A:228-308) Probab=20.88 E-value=58 Score=13.92 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=25.2 Q ss_pred HHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 62237989899999619997899999999999999999999957 Q gi|254780723|r 73 AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116 (137) Q Consensus 73 ~~~k~~~sl~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g 116 (137) +.++.+.++..++++-+ +.|-.+..+++++.+.+.++.| T Consensus 90 ~a~~~ktPLq~~~dr~~-----~~~~~~~~~ia~l~fi~~~l~~ 128 (157) T 1wpg_A 90 ATEQDKTPLQQKLDEFG-----EQLSKVISLICVAVWLINIGHF 128 (157) T ss_dssp CCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCTTS T ss_pred HCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHC T ss_conf 00232048999999999-----7755889899999999999861 No 7 >>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} (A:1-86) Probab=16.57 E-value=72 Score=13.32 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHH Q ss_conf 999999999999999999622379898999996199978999999 Q gi|254780723|r 55 KRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYI 99 (137) Q Consensus 55 kRRksvq~sLKelE~rqk~~~k~~~sl~~rL~QAGL~~s~~~F~i 99 (137) +-|..|-+-|.+.+... -.-..+-.++.+.|-++++...|= T Consensus 18 ~~R~~Il~~l~~~~~~h----~sa~ei~~~l~~~~~~i~~~TVYR 58 (86) T 1mzb_A 18 LPRVKILQMLDSAEQRH----MSAEDVYKALMEAGEDVGLATVYR 58 (86) T ss_dssp HHHHHHHHHHHCC-CCS----BCHHHHHHHHHHTTCCCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHCCCCCHHHHHH T ss_conf 89999999998579999----999999999997587888899999 No 8 >>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71) Probab=15.71 E-value=76 Score=13.19 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999996223 Q gi|254780723|r 59 ELREAIQKIELNHKAKIG 76 (137) Q Consensus 59 svq~sLKelE~rqk~~~k 76 (137) ++.+..++||..|+++.. T Consensus 21 slRK~v~kie~~q~a~y~ 38 (71) T 2zkr_z 21 SLRKMVKKIEISQHAKYT 38 (71) T ss_dssp HHHHHHHHHHHHHHSCBC T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 999999999999627861 No 9 >>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} (A:60-137,A:231-275) Probab=14.84 E-value=65 Score=13.62 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=10.9 Q ss_pred CHHHHHHHCCCCCC Q ss_conf 98999996199978 Q gi|254780723|r 80 SIDSLISCSGLPIS 93 (137) Q Consensus 80 sl~~rL~QAGL~~s 93 (137) -|+-.|.|||++|| T Consensus 87 ~~~~~~~~~~~~~~ 100 (123) T 2ex2_A 87 ILKYELKQAGITWS 100 (123) T ss_dssp HHHHHHHHTTCEES T ss_pred HHHHHHHHCCCEEC T ss_conf 99999985483321 No 10 >>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:1-121) Probab=13.15 E-value=49 Score=14.35 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=0.0 Q ss_pred HHHHHHHCCCCCCH Q ss_conf 89999961999789 Q gi|254780723|r 81 IDSLISCSGLPISK 94 (137) Q Consensus 81 l~~rL~QAGL~~s~ 94 (137) |....-||||+|+. T Consensus 35 L~le~fQaGLsW~~ 48 (121) T 2jg6_A 35 LALESQHAGLSWLT 48 (121) T ss_dssp HHHHHTCTTSCHHH T ss_pred HHHHHHHCCCCHHH T ss_conf 99999752586999 Done!