Query         gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 137
No_of_seqs    72 out of 74
Neff          4.5 
Searched_HMMs 33803
Date          Wed Jun  1 14:22:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780723.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2zxe_A Na, K-ATPase alpha sub  58.5      14  0.0004   17.8   9.8  121    4-129    15-148 (154)
  2 >1omh_A TRWC protein; protein-  34.1      33 0.00098   15.4   4.5   34   52-85      8-55  (70)
  3 >1czq_A IQN17, fusion protein   30.5      34   0.001   15.3   2.3   18   56-73      2-19  (46)
  4 >3ixz_A Potassium-transporting  23.7      50  0.0015   14.3   6.3  108    4-128     8-117 (124)
  5 >1ffk_W Ribosomal protein L37A  22.2      51  0.0015   14.2   1.9   18   59-76     12-29  (61)
  6 >1wpg_A Sarcoplasmic/endoplasm  20.9      58  0.0017   13.9   6.8   39   73-116    90-128 (157)
  7 >1mzb_A Ferric uptake regulati  16.6      72  0.0021   13.3   3.7   41   55-99     18-58  (86)
  8 >2zkr_z 60S ribosomal protein   15.7      76  0.0022   13.2   2.2   18   59-76     21-38  (71)
  9 >2ex2_A Penicillin-binding pro  14.8      65  0.0019   13.6   1.0   14   80-93     87-100 (123)
 10 >2jg6_A DNA-3-methyladenine gl  13.1      49  0.0015   14.3   0.0   14   81-94     35-48  (121)

No 1  
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338)
Probab=58.47  E-value=14  Score=17.76  Aligned_cols=121  Identities=13%  Similarity=0.044  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHH----------HH--HHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             346999999999999999999996306047789-999999----------77--54201220589999999999999999
Q gi|254780723|r    4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKS-QDNAKV----------VR--ADRVIPTANTKRRKELREAIQKIELN   70 (137)
Q Consensus         4 ~~~l~~~gL~~vavg~laya~~yp~ls~~~~~a-qrr~~~----------~~--a~R~~~~~~~kRRksvq~sLKelE~r   70 (137)
                      ++.++...|...++.++.-.++.+....+.... -...-+          ..  ++.+.+..-.+=++.++..+-.+.+-
T Consensus        15 f~~~~~~iLl~aa~is~~~~~~~~~~~~~~~~~~~~~~i~I~~iv~in~~i~f~qE~ka~k~~~aL~~~~~T~lgkI~~l   94 (154)
T 2zxe_A           15 LFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVRTVMGRIATL   94 (154)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSGSHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             96729999999999999999998603566652018788897899999999999999999999999754593302166662


Q ss_pred             HHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99622379898999996199978999999999999999999999571189999999999
Q gi|254780723|r   71 HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSS  129 (137)
Q Consensus        71 qk~~~k~~~sl~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g~~~l~a~g~a~~~  129 (137)
                      -.+.+..+.+++..+++-+     +.|-.+..+++++.+++.++.|.++.-++-.+++-
T Consensus        95 v~~~~~~~t~l~~~idr~~-----~~~~~~~l~~~~~~f~~~~~~~~~~~~a~~~aisl  148 (154)
T 2zxe_A           95 ASGLEVGRTPIAIEIEHFI-----HIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGI  148 (154)
T ss_dssp             HHHSCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             1201123348999999999-----99999999999999988887333088999999999


No 2  
>>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} (A:224-293)
Probab=34.06  E-value=33  Score=15.39  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHHH---------HHHHHHHH---H--CCCCCHHHHH
Q ss_conf             058999999999999---------99999962---2--3798989999
Q gi|254780723|r   52 ANTKRRKELREAIQK---------IELNHKAK---I--GNTKSIDSLI   85 (137)
Q Consensus        52 ~~~kRRksvq~sLKe---------lE~rqk~~---~--k~~~sl~~rL   85 (137)
                      .-++||.+|++.+++         .+.++...   +  |..+++....
T Consensus         8 ~FSkR~~qI~~~~~~~G~~~~~at~~~r~~A~l~TR~~K~~~~~~~l~   55 (70)
T 1omh_A            8 GFSKRTEQIAEWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALR   55 (70)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTTCCHHHHHHHHHHTCCCCCCCCHHHHH
T ss_pred             HHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             857389999999998189988679999999998574778899989999


No 3  
>>1czq_A IQN17, fusion protein between the hydrophobic pocket of HIV GP41 and GCN4-PIQI; envelope glycoprotein, coiled coil, viral protein/viral protein inhibitor complex; HET: DAR DHI DTR; 1.50A {Saccharomyces cerevisiae} (A:)
Probab=30.46  E-value=34  Score=15.29  Aligned_cols=18  Identities=33%  Similarity=0.567  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999996
Q gi|254780723|r   56 RRKELREAIQKIELNHKA   73 (137)
Q Consensus        56 RRksvq~sLKelE~rqk~   73 (137)
                      |-||+||...|++.+++.
T Consensus         2 RMKQiEDkiEEilSK~yh   19 (46)
T 1czq_A            2 RMKQIEDKIEEIESKQKK   19 (46)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             166888999999998888


No 4  
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343)
Probab=23.75  E-value=50  Score=14.28  Aligned_cols=108  Identities=8%  Similarity=-0.000  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             346999999999999999999996306047789999--999775420122058999999999999999999622379898
Q gi|254780723|r    4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN--AKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI   81 (137)
Q Consensus         4 ~~~l~~~gL~~vavg~laya~~yp~ls~~~~~aqrr--~~~~~a~R~~~~~~~kRRksvq~sLKelE~rqk~~~k~~~sl   81 (137)
                      ++.++..-|...++.|+.-.++.+.-+ ++....+.  .-+.-..=-           +...+-=..+++.+|--.+.||
T Consensus         8 f~~~~~iiL~vaaiis~~~~~i~~~~~-~~~~~~~~~~~ivI~~iv~-----------in~~igf~QE~kAeka~~~TPL   75 (124)
T 3ixz_A            8 LAGGLQCLMWVAAAICLIAFAIQASEG-DLTTDDNLYLALALIAVVV-----------VTGCFGYYQEFKSTNIIEKTPI   75 (124)
T ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCCHH
T ss_conf             866499999999999999999872357-6665125999999999999-----------9999999999999999957878


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             99999619997899999999999999999999957118999999999
Q gi|254780723|r   82 DSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS  128 (137)
Q Consensus        82 ~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g~~~l~a~g~a~~  128 (137)
                      ..+|++=|.     ..-++..+++.+.+.+.++.|.+++-++..+++
T Consensus        76 q~~l~~~~~-----~l~~~a~~~~~~~f~~~~~~g~~~~~~~~~ai~  117 (124)
T 3ixz_A           76 AIEIEHFVD-----IIAGLAILFGATFFIVAMCIGYTFLRAMVFFMA  117 (124)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999999-----999999999999876333135317899999999


No 5  
>>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61)
Probab=22.22  E-value=51  Score=14.25  Aligned_cols=18  Identities=28%  Similarity=0.589  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999996223
Q gi|254780723|r   59 ELREAIQKIELNHKAKIG   76 (137)
Q Consensus        59 svq~sLKelE~rqk~~~k   76 (137)
                      ++.+..|+||.+|+++..
T Consensus        12 slRK~vkkie~~q~~ky~   29 (61)
T 1ffk_W           12 KIRVRVRDVEIKHKKKYK   29 (61)
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             699999999998715745


No 6  
>>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} (A:43-118,A:228-308)
Probab=20.88  E-value=58  Score=13.92  Aligned_cols=39  Identities=8%  Similarity=0.028  Sum_probs=25.2

Q ss_pred             HHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             62237989899999619997899999999999999999999957
Q gi|254780723|r   73 AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS  116 (137)
Q Consensus        73 ~~~k~~~sl~~rL~QAGL~~s~~~F~i~S~v~g~v~~~i~~i~g  116 (137)
                      +.++.+.++..++++-+     +.|-.+..+++++.+.+.++.|
T Consensus        90 ~a~~~ktPLq~~~dr~~-----~~~~~~~~~ia~l~fi~~~l~~  128 (157)
T 1wpg_A           90 ATEQDKTPLQQKLDEFG-----EQLSKVISLICVAVWLINIGHF  128 (157)
T ss_dssp             CCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             00232048999999999-----7755889899999999999861


No 7  
>>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} (A:1-86)
Probab=16.57  E-value=72  Score=13.32  Aligned_cols=41  Identities=12%  Similarity=0.171  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHH
Q ss_conf             999999999999999999622379898999996199978999999
Q gi|254780723|r   55 KRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYI   99 (137)
Q Consensus        55 kRRksvq~sLKelE~rqk~~~k~~~sl~~rL~QAGL~~s~~~F~i   99 (137)
                      +-|..|-+-|.+.+...    -.-..+-.++.+.|-++++...|=
T Consensus        18 ~~R~~Il~~l~~~~~~h----~sa~ei~~~l~~~~~~i~~~TVYR   58 (86)
T 1mzb_A           18 LPRVKILQMLDSAEQRH----MSAEDVYKALMEAGEDVGLATVYR   58 (86)
T ss_dssp             HHHHHHHHHHHCC-CCS----BCHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             89999999998579999----999999999997587888899999


No 8  
>>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71)
Probab=15.71  E-value=76  Score=13.19  Aligned_cols=18  Identities=39%  Similarity=0.632  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999996223
Q gi|254780723|r   59 ELREAIQKIELNHKAKIG   76 (137)
Q Consensus        59 svq~sLKelE~rqk~~~k   76 (137)
                      ++.+..++||..|+++..
T Consensus        21 slRK~v~kie~~q~a~y~   38 (71)
T 2zkr_z           21 SLRKMVKKIEISQHAKYT   38 (71)
T ss_dssp             HHHHHHHHHHHHHHSCBC
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             999999999999627861


No 9  
>>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} (A:60-137,A:231-275)
Probab=14.84  E-value=65  Score=13.62  Aligned_cols=14  Identities=14%  Similarity=0.200  Sum_probs=10.9

Q ss_pred             CHHHHHHHCCCCCC
Q ss_conf             98999996199978
Q gi|254780723|r   80 SIDSLISCSGLPIS   93 (137)
Q Consensus        80 sl~~rL~QAGL~~s   93 (137)
                      -|+-.|.|||++||
T Consensus        87 ~~~~~~~~~~~~~~  100 (123)
T 2ex2_A           87 ILKYELKQAGITWS  100 (123)
T ss_dssp             HHHHHHHHTTCEES
T ss_pred             HHHHHHHHCCCEEC
T ss_conf             99999985483321


No 10 
>>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:1-121)
Probab=13.15  E-value=49  Score=14.35  Aligned_cols=14  Identities=14%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             HHHHHHHCCCCCCH
Q ss_conf             89999961999789
Q gi|254780723|r   81 IDSLISCSGLPISK   94 (137)
Q Consensus        81 l~~rL~QAGL~~s~   94 (137)
                      |....-||||+|+.
T Consensus        35 L~le~fQaGLsW~~   48 (121)
T 2jg6_A           35 LALESQHAGLSWLT   48 (121)
T ss_dssp             HHHHHTCTTSCHHH
T ss_pred             HHHHHHHCCCCHHH
T ss_conf             99999752586999


Done!