BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780723|ref|YP_003065136.1| hypothetical protein
CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
(137 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040400|gb|ACT57196.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 137
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL
Sbjct: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF
Sbjct: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
Query: 121 TFLCVSVSSALVFPRFF 137
TFLCVSVSSALVFPRFF
Sbjct: 121 TFLCVSVSSALVFPRFF 137
>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 324
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN---AKVVRADRVIPTANTKRRKE 59
++ + + + +V + Y ++ + A+ A R + A RR++
Sbjct: 2 NLQTLAMAFMAATAVGGVAWVFLYPALSGEAKAEKRRSAFARTAPAVRQVDRAQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++IE K + +++ I+ +GL SK+ + I S + G +C + + +
Sbjct: 62 IEGSLREIEQRQK--RDSKITLNDRIAQAGLSWSKEKFLIVSGIFGAVCFAVPMFSGAGP 119
Query: 120 FTFLCVSVSSALVFPRFF 137
+ ++ ++ PR+
Sbjct: 120 IAAVGLAFAAGFGLPRWL 137
>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRKE 59
++ S L L VSV + Y +++ Q V R A R I + RR++
Sbjct: 2 EMQSLALGFLAAVSVGGLAWVFIYPLLSGEKQAEQRRTSVARTTPAVRQIEKSQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++IE + + S+ + ++ +GL + + S +G + ++ L
Sbjct: 62 VEGSLREIEARSQKQ--KNVSLGTKLTQAGLDWTPNKFIGVSAGLGTVAFATTMILGGGL 119
Query: 120 FTFLCVSVSSALVFPRF 136
+ ++ ++ PR+
Sbjct: 120 LAAVGLAFAAGFGLPRW 136
>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKEL 60
+ + + + TV+V + Y +++ Q A + R + R + RR+++
Sbjct: 3 MQTLAIAFMATVAVGGVAWVFLYPLLSGEKKAEQRRASLARPEPVARQVDKGQRSRREQV 62
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+++++ + + +I + ++ +GL + +++YIGS V+G L
Sbjct: 63 ELTLKEVDARRQKE--KKVAISTRLTQAGLDWAPKNFYIGSAVLGAAVFALVYLSRGGIT 120
Query: 121 TFLCVSVSSALVFPRFF 137
+ + ++ PR+
Sbjct: 121 PAVGLGFAAGFGLPRWL 137
>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR----ADRVIPTANTKRRK 58
++ + + + V++ + Y ++ + A + R A RV RR+
Sbjct: 2 NLQTLAIAFMSAVTLGGLAWVFLYPALSGERQAEKRRASLARPENIARRVERNPQRSRRE 61
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ + ++ +E K ++ + +G+ +K+ + IGS V+G +L + ++
Sbjct: 62 QVEDTLKDVENRAKQA--KKVPLNIRLEQAGVNWTKRQFMIGSAVLGIATFLLFYIVDAN 119
Query: 119 FFTFLCVSVSSALVFPRF 136
F + + ++ PR+
Sbjct: 120 FLATIAFAGAAGFGLPRW 137
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA-----DRVIPTANTKRR 57
++ + + L S+ +YA+F V++ + Q ++ DR KRR
Sbjct: 11 ELTTIAVALLAAFSIGGVIYALFEPVLSGSKRREQRLGQIAARPQAASDRRPVRDAEKRR 70
Query: 58 KELREAIQKIELNHK--AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
K +++ +++ E K K N+ ++ + + +GL ++H+ I S V G + +L L
Sbjct: 71 KSVQDQLKEFEEKQKARQKRANSLTLTNRLEQAGLDWERKHFIIFSIVSGLVFLILGFLL 130
Query: 116 SSSFFTFLCVSVSSALVFPRFF 137
+ S L ++ L FPR++
Sbjct: 131 TRSPILTLAIAFVGGLGFPRWY 152
>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 328
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVI-------PTANTK 55
D ++ + G+ ++ C AI + + + A+V RA + K
Sbjct: 2 DQSTLMIAGIAVLAALCIG-AIGFLFVGGESRSQKRVARVTRAGNARLVAVDGEVDNSEK 60
Query: 56 RRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
RRK+++E ++ +E + S+++ I +GL ++ +++YI S V G ++ +
Sbjct: 61 RRKQMQETLKGLEEKQQE-HKKRVSLNTRIERAGLEMTTRNFYIASIVTGIAFFLVFKLV 119
Query: 116 SSSFFTFLCVSVSSALVFPRF 136
S + FPR+
Sbjct: 120 GLSLLVSALSGFAGGFGFPRW 140
>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 323
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRKEL 60
+ + + + V++ + Y +++ + A R A R I RR+++
Sbjct: 3 IQTLAIAFMSAVTLGGLAWVFLYPLLSGERQAEKRRASFSRTEAATRRIDRNQRSRREQV 62
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+ ++ +E K +++ ++ +G+ S++ + IGS +G + + +++
Sbjct: 63 EDTLKDVEDRAKQA--KKVPLNTRLAQAGVSWSRRQFIIGSAALGLLVFFICFV-TANLI 119
Query: 121 TFLCVSVSSALVFPRF 136
+++S+ L PR+
Sbjct: 120 ATAALALSAGLGLPRW 135
>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 337
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN---------AKVVRADRVIPTANTK 55
+ + L V+ YA+FY + D ++ + R++R K
Sbjct: 7 SIVMFIVLAVVACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQK 66
Query: 56 RRKELREAIQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL 113
RRK+L++ I+ +E K + N + L++ +GL ++ Q +YI S V F+ ++L
Sbjct: 67 RRKQLQDNIKDLEARQKQREKNQKYPPLRILLAQAGLSLTLQKFYIYSGVAAFLATFIAL 126
Query: 114 TLSSSFFTFLCVSVSSALVFPRFF 137
+ ++++ PR+F
Sbjct: 127 IFGAPLLFLPGIAIAGFFGLPRWF 150
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 322
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANT-KRRKE 59
M ++ + GL+ V+ C YA+ ++ ++ + + RR++
Sbjct: 1 MTSFDALIVAGLLAVTASCLAYAVVVPLLPSEARAAKRQQAIAGRRSPMERVQAVNRREQ 60
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++++E + S++ I+ +GL I+K +Y+ S V+ + V+ L +S S
Sbjct: 61 VAKSLKELEAKERKAR---PSLELRITQAGLSITKSQFYVASGVLAGVSLVMGLVMSGSP 117
Query: 120 FTFLCVSVSSALVFPRFF 137
T + ++ ++ L P++
Sbjct: 118 LTAIALAFAAGLGLPQWL 135
>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 340
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT------ANTKR 56
D+ + ++GL+ +S+ L+A+ ++ +SQ + + D P KR
Sbjct: 11 DMTALAVMGLVMLSIGGVLFALLQPAMSSDKRRSQRISTIKGVDGKTPGLAIRNRDADKR 70
Query: 57 RKELREAIQKIELN--HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT 114
RK +++ + ++E K + + S+ I +GL + + S V G + V+
Sbjct: 71 RKSVKDQLDQLEQRTQQKNAMRDKPSLRLRIEQAGLSWDVKRFIQISIVTGVLATVIFYF 130
Query: 115 LSSSFFTFLCVSVSSALVFPRFF 137
S + L + A PRF+
Sbjct: 131 FSGNVLIALLGGFAGAFGLPRFY 153
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN---------AKVVRADRVIPTAN 53
D V L S YA + I+ + +V+A R T
Sbjct: 5 DGTVLAFVVLAGFSAGAVAYAFLFTQISNEKQAGKRLETIKTAETDRSIVKATRDRATDA 64
Query: 54 TKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
KRRK +++++++++ K K + + + +G+ +S + +YI S + G V+
Sbjct: 65 AKRRKSVQDSLKELDEKQKTKDSAIKKPPLKAQLRQAGMKVSIERFYIYSAICGLALTVV 124
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRFF 137
+ + + V ++ AL PR+F
Sbjct: 125 AFVVGAPMLVLPGVLLAGALGLPRWF 150
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 12/148 (8%)
Query: 1 MFDVNSWFLV--GLITVSVFCFLYAIFYNVINPGDSKSQDNAKV---------VRADRVI 49
MF +++ + GL +S Y + Y+ I +V A R
Sbjct: 1 MFGLDTVVVAIIGLAALSAGALGYGVLYSRIEGDRKAENRVKRVKAAETDRSKASAARDR 60
Query: 50 PTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPISKQHYYIGSCVIGFIC 108
KRRK ++++++ ++ +K T + I +GLP S +Y+ S V+G +
Sbjct: 61 LAEANKRRKSVQDSLKTLDEKNKENDKKTSPPLKDKIGQAGLPFSLGQFYMISLVLGLVA 120
Query: 109 GVLSLTLSSSFFTFLCVSVSSALVFPRF 136
G++ S +++ PR+
Sbjct: 121 GLVGFVAYGSPLVAAGIAIIFGAGVPRW 148
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN---------AKVVRADRVIPTAN 53
D V L S YA +N I+ + VV+A R T
Sbjct: 5 DGTVLAFVVLAGFSAGAVAYAFLFNQISNERQTGKRLETIKAAETDRSVVKATRDRATDA 64
Query: 54 TKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
KRRK +++++++++ K+K + + + +G+ + + +YI S + G V+
Sbjct: 65 AKRRKSVQDSLKELDEKQKSKDSAIKKPPLKAQLRQAGMKVPIERFYIYSAICGIALTVI 124
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRFF 137
+ + V ++ AL PR+F
Sbjct: 125 AFVAGAPLIVLPGVLLAGALGLPRWF 150
>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKELREAIQKIELNHKA 73
+ + Y +++ Q + V +A+ R + RR+++ +++ +E +
Sbjct: 16 IGGIAWVFIYPMLSGERKAEQRRSSVAKAEPVVRQVERNQRSRREQVESSLKDLEAKAQK 75
Query: 74 KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVF 133
+ ++ IS +GL + Q ++I S V+GF+ ++ L + ++ L
Sbjct: 76 QSK--VPLNIRISQAGLDWTVQKFWIISGVLGFVVCAVAFFAGGGPLGALGLGFAAGLGL 133
Query: 134 PRF 136
PR+
Sbjct: 134 PRW 136
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIF-YNVINPGDSKSQDNAKVVRADRVIPTANTK---RRK 58
D NS +G+ V++ +A+ ++ + + Q + + + +A + RRK
Sbjct: 4 DQNSLIALGIGLVAIVGLAFALLGFDGGGATNKRVQSLSGNAKQAKRKTSAKEQTRDRRK 63
Query: 59 ELREAIQKIELNHKAKI-GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
+ ++++KIE K S+D LI +G S + ++ S ++ + +
Sbjct: 64 TISDSLKKIEDKQKEANQKKKVSLDKLIEQAGFDFSVRDFWTASAIVAVVMIGIGYVSGQ 123
Query: 118 SFFTFLCVSVSSALVFPRFF 137
+ L + + L PR+F
Sbjct: 124 NALVILAMGIVGGLGIPRWF 143
>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 336
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN---------AKVVRADRVIPTAN 53
+ V L ++ YA+FY + D ++ + R++R
Sbjct: 4 SASIVMFVVLAVIACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADI 63
Query: 54 TKRRKELREAIQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
KRRK+L++ I+ +E K + N + L++ +GL ++ Q +Y+ S F +
Sbjct: 64 QKRRKQLQDNIKDLEARQKQREKNQKYPPLRILLTQAGLTLTLQKFYLYSGAAAFFATFV 123
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRFF 137
+L + ++++ PR+F
Sbjct: 124 ALLFGAPLLFLPGIAIAGFFGLPRWF 149
>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 339
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 7/136 (5%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA-----DRVIPTANTKRRKELREA 63
+ L+ SV +Y +F ++ + + V R +R+K +++
Sbjct: 17 VAILVMFSVGGIIYGLFLPSLSGTKKRDARMSAVSARPQSETQRKTMRDTNRRKKSIQDQ 76
Query: 64 IQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ E KAK + I +GL +H + S V + V+SL S +
Sbjct: 77 LKDFEERQKAKHEKQKNVPLKVKIEQAGLEWEMRHLVLFSVVSAILFFVISLIASGNLLI 136
Query: 122 FLCVSVSSALVFPRFF 137
+ + FPR++
Sbjct: 137 AAAFTFVGGIGFPRWY 152
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 24 IFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAK 74
+ Y+ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 26 LMYSRIEADKKSASRIDRVKSAESDRVKVKAARDRVQEMSKRRKSVQDNLKDLEKRQHEK 85
Query: 75 IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
T ++ S + +GL I+ +YI S + + +++ + S + ++V + L P
Sbjct: 86 TKKTLTMKSRLVQAGLTITVGKFYIISAIFACVLLLMAFLIGVSLMVIIGIAVVAGLGLP 145
Query: 135 RF 136
R+
Sbjct: 146 RW 147
>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 335
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 26 YNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
++ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 28 FSRIEADKKSASRINRVKSAEVDRAKVKAARDRVQEMSKRRKSVQDNLKDLEKRQNEKTK 87
Query: 77 NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
T S+ S + +GL ++ +Y+ S + + ++ + +S+ + ++ + L PR+
Sbjct: 88 KTLSMKSRLVQAGLTVTLTQFYLFSAIFASVLLFMAFIIGASWLVMIGIAFVAGLGLPRW 147
>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRKEL 60
+ + L V+V + Y +++ + + V R A R + RR+++
Sbjct: 3 MQALSLGFFAAVAVGGLAWVFLYPMLSGEKQAEKRRSSVARVTPAVRQVERTQRSRREQV 62
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+++ IE + + ++ + ++ +GL + + + S V+G +++
Sbjct: 63 EGSLRDIEARKQKQ--KNVALSTRLTQAGLDWTPKKFITISAVLGVFVFAVTMLFGGGLT 120
Query: 121 TFLCVSVSSALVFPRFF 137
++ ++ PR+
Sbjct: 121 AAAGLAFAAGFGLPRWM 137
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKV---------VRADRVIPTAN 53
D L L+ +S YA + I + +V ++A R
Sbjct: 2 DPTIVLLAVLVAISAGALAYAFLFQQIEVEKKTTSRFKRVQAAETDHTNIKAARDRVQEL 61
Query: 54 TKRRKELREAIQKIELNH--KAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
+KRRK ++++++ +E KAK S+ + +GL IS + +++ S +
Sbjct: 62 SKRRKSMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGLTISVRQFHLLSAGAAACAAFI 121
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRF 136
SL S T L ++V +AL PR+
Sbjct: 122 SLIYGLSLLTALPIAVVAALGLPRW 146
>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
Length = 335
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 24 IFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAK 74
+ ++ + +V V+A R +KRRK +++ ++ +E K
Sbjct: 26 LMFSRFEADKKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEK 85
Query: 75 IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
T S+ S + +GLPIS +Y+ S V + ++ + +S+ + ++V + L P
Sbjct: 86 TRKTLSMKSRLLQAGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLP 145
Query: 135 RF 136
R+
Sbjct: 146 RW 147
>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
Length = 335
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 24 IFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAK 74
+ ++ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 26 LMFSRIEADKKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEK 85
Query: 75 IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
T S+ S + +GLPIS +Y+ S V + ++ + +S+ + ++V + L P
Sbjct: 86 TRKTLSMKSRLLQAGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLP 145
Query: 135 RF 136
R+
Sbjct: 146 RW 147
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 26 YNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
++ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 28 FSKIEADKKSASRINRVKSAESDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTK 87
Query: 77 NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
T S+ S + +GL I+ +Y+ S V + +++L + +S + ++V + L PR+
Sbjct: 88 KTVSMKSRLVQAGLTITAAKFYLISAVFASVLLLIALVVGASLMVMIGIAVVAGLGLPRW 147
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 113 bits (284), Expect = 5e-24, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 26 YNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
Y I +V ++A R +KRRK ++++++++E + K
Sbjct: 28 YPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSA 87
Query: 77 NT-KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
NT S+ + +GL IS +Y+ S + G ++ L + V++ A PR
Sbjct: 88 NTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPR 147
Query: 136 F 136
+
Sbjct: 148 W 148
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 26 YNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
Y I +V ++A R +KRRK ++++++++E + K
Sbjct: 28 YPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSA 87
Query: 77 NT-KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
NT S+ + +GL IS +Y+ S + G ++ L + V++ A PR
Sbjct: 88 NTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPR 147
Query: 136 F 136
+
Sbjct: 148 W 148
>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
Length = 335
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 24 IFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAK 74
+ + I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 26 LMFTRIEADKKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEK 85
Query: 75 IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
T S+ S + +GLPIS +Y+ S + + +++ + +S+ + ++V + L P
Sbjct: 86 TRKTLSMKSRLLQAGLPISVGKFYLISAIFASVLLIVAFIVGASWMVMIGIAVVAGLGLP 145
Query: 135 RF 136
R+
Sbjct: 146 RW 147
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKV---------VRADRVIPTAN 53
D L L+ +S YA + I + +V ++A R
Sbjct: 2 DPTILLLAALVAISAGALAYAFLFQQIEVEKKTTSRVKRVKAAETDHANIKAARDRVQEL 61
Query: 54 TKRRKELREAIQKIELNH--KAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
KRRK ++++++++E KAK + + +GL +S + +++ S V+
Sbjct: 62 GKRRKSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGLQLSVRQFHLLSAGAAAFSVVI 121
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRF 136
+L S L + AL PR+
Sbjct: 122 ALLYGLSLLIALLIGAVVALGLPRW 146
>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
Length = 323
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR--ADRVIPTANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + A A RR+
Sbjct: 1 MSALNAPLAVGLVAVAAGSLAYVFLMPALSGERRAEQRRKALGQPQAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + +++ S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSVITAVVLALVAFLASHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---------RVIPTANTKRR 57
+V L VS Y + Y+ I ++V A+ R +KRR
Sbjct: 9 LLIVVLAAVSAAAVCYGVLYSQIEAQKKTDSRVSRVKAAESDRTKVKVARDRVQEMSKRR 68
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
K +++ ++ +E +S+ + + +GL ++ +Y+ S + G V++ +
Sbjct: 69 KSVQDTLKDLEKRQVENTKKKQSLKARLVQAGLSLTPARFYVFSVLFGLFVMVVAFLFGA 128
Query: 118 SFFTFLCVSVSSALVFPRF 136
+ ++A PR+
Sbjct: 129 PLAVIAGLPFAAAFGLPRW 147
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 11/145 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKV---------VRADRVIPTAN 53
++ V L S Y + +N I + V VRA R
Sbjct: 5 SLSLLAFVVLAACSAGGLAYVLMFNTIASEKKVERRLETVKRAQIEGNVVRAARDRAAEI 64
Query: 54 TKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
KRR+ ++E+++ IE K + + I +GL +S + +YI S V+G + ++
Sbjct: 65 AKRRRSIQESLKDIETRQKDQDRFLKRPPLKIQIRQAGLEMSMERFYILSAVVGLLFVIV 124
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRF 136
+ + V+ PR+
Sbjct: 125 TFIAGAPLLAVAGAMVAGFFGAPRW 149
>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
Length = 323
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR--ADRVIPTANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + A A RR+
Sbjct: 1 MSALNAPLTVGLVAVAAGSLAYVFLMPALSGERRAEQRRKALGQPQAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSAITAVVLALAAFLVSHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
Length = 323
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVV--RADRVIPTANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + +A A RR+
Sbjct: 1 MSALNAPLAVGLVAVAAGSLAYVFLMPALSGERRAEQRRKALGQPKAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSAITAVVLALAAFFVSHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKV--VRADRVIPTANTKRRK 58
M +N+ GL+ V+ Y +++ Q + RA A RR+
Sbjct: 1 MSALNAPLAAGLVAVASGALAYVFLMPLLSGERRAEQRRKALGQSRAVLAERGAAANRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ I+ +GL S++ Y I S V + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRIARAGLDWSRRKYQIVSAVTAVGVALAAFLISHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
L + P +
Sbjct: 118 VIVALLGLFAGGFGLPAWM 136
>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 335
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 26 YNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
++ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 28 FSKIEADKKSASRINRVKSAESDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTK 87
Query: 77 NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
T S+ + + +GL I+ +Y+ S V + +++L + +S+ + ++V + L PR+
Sbjct: 88 KTVSMKARLVQAGLTITAAKFYLISAVFASMLLLVALVVGASWMVMVGIAVVAGLGLPRW 147
>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKELREAIQKIELNHKA 73
+ + Y +++ Q + V +++ R RR+++ +++ +E +
Sbjct: 16 IGGIAWVFLYPMLSGERKAEQRRSSVAKSEPVVRQAERNQRSRREQVESSLKDLEAKAQK 75
Query: 74 KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVF 133
+ ++ IS +GL + Q ++I S V+GF+ ++ L + ++
Sbjct: 76 QSK--VPLNLRISQAGLDWTVQKFWIISGVLGFMAAAIAFFGGGGPLGALGLGFAAGFGL 133
Query: 134 PRF 136
PR+
Sbjct: 134 PRW 136
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRAD---------RVIPTANTKRRKELREAIQKIELNHK 72
Y + ++ + + A+V A+ R +KRRK +++ +++IE
Sbjct: 21 YVLLFSRVQADKKTATRLARVKNAEADTAKKQVARDRVQELSKRRKSVQDTLKEIERKQN 80
Query: 73 AKIGN--TKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
K ++S+ + +GL +S + I S +G + L L S F L ++ ++
Sbjct: 81 EKNKKISSQSLKQRLGQTGLDVSLIQFSIASTTLGLVFFCLCFVLGMSLFVSLGIAFTAG 140
Query: 131 LVFPRF 136
PR+
Sbjct: 141 AGLPRW 146
>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 335
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 11/148 (7%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---------RVIPT 51
M V L T+S C YA + + R + +
Sbjct: 1 MTPFGMMLFVLLSTISAGCLAYAFMQPKLAASKRVAARKTTYSRDEASRTRVIEAKERMQ 60
Query: 52 ANTKRRKELREAIQKIELNHKAK--IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICG 109
KRR+ L+ ++ +E K + ++ I +GL I+ + + + S +
Sbjct: 61 EQAKRRRALQNNLKDLEDRAKERGGHSAKPTLQQRIDQAGLKITAKKFRLISAGLAAAAF 120
Query: 110 VLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+L+L L ++V + L PR F
Sbjct: 121 LLTLVFGLPILATLGIAVVAGLGLPRAF 148
>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 338
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTA-----NTKRRKELR 61
+ T+SV A+FY + + + + RRK +
Sbjct: 14 LMVFAFATLSVGGVAAALFYPQFAKASPFRRRFQGLAALGEEEESTAPADEDRDRRKSVE 73
Query: 62 EAIQKIELNHKAKIGN--TKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++E KAK ++ + +GL +++ Y+ V G + ++L L +
Sbjct: 74 KTLRELEEKQKAKTRKAGKPTLSGRLRQAGLSWNRRAYFTACAVCGALTFPVALLLGAGS 133
Query: 120 FTFLCVSVSSALVFPRFF 137
+ +++ L+ P F+
Sbjct: 134 LVSVGFALAGGLLLPHFY 151
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 22 YAIFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHK 72
Y + Y+ I +V ++A R +KRRK L+++++++E +
Sbjct: 24 YGVLYSRIENDKKAEGRLRRVSAAETDRAKIKAARDRVNEMSKRRKSLQDSLKELEKKQQ 83
Query: 73 AKIGNT-KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSAL 131
K N S+ + + L IS +Y+ S + G ++ L + + V++ +A
Sbjct: 84 EKSANAAPSMKKRLVQANLSISPAQFYVFSVIFGLFALIVVLIAGAGLWIAGGVALITAA 143
Query: 132 VFPRFF 137
PR+
Sbjct: 144 GLPRWL 149
>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 335
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---------RVIPT 51
M + T++ +A I A+ R D R
Sbjct: 1 MNPAGIILFILFSTIAAGALAFAFLQPRIAKERKVENRRAQYTRDDTERRSLKVARDRLK 60
Query: 52 ANTKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICG 109
KRRK ++ +++++E K + ++ + +G +S + + + S V+G +
Sbjct: 61 EQDKRRKTIQSSLKELESRQKERDKHTGKLTLQRQLEQAGWTMSVKQFVLLSIVMGVVSL 120
Query: 110 VLSLTLSSSFFTFLCVSVSSALVFPRFF 137
++ + + V L PRF
Sbjct: 121 FVAAIFGAPLLLLIGAVVVGGLGLPRFL 148
>gi|218672463|ref|ZP_03522132.1| probable pilus assembly protein [Rhizobium etli GR56]
Length = 168
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 24 IFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAK 74
+ ++ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 26 LMFSRIEADKKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEK 85
Query: 75 IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
T S+ S + +GLPIS +Y+ S + + + + +S+ + ++V + L P
Sbjct: 86 TRKTLSMKSRLLQAGLPISVGKFYLISAIFASVLLFGAFVVGASWMVMIGIAVVAGLGLP 145
Query: 135 RF 136
R+
Sbjct: 146 RW 147
>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 324
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRKE 59
++ + L + +V + Y V++ + A + R A R + A RR++
Sbjct: 2 NLQTLALAFMAATAVGGVAWVFLYPVLSGEMKAEKRRAALARTSPAIRQVDRAQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ E++++IE K ++++ I+ +GL SK+ + I S ++ + + L +
Sbjct: 62 IEESLREIEQRQKRDRK--VTLNNRIAQAGLSWSKEKFLIVSGILALASFAVPIVLGAGP 119
Query: 120 FTFLCVSVSSALVFPRFF 137
++ ++ PR+
Sbjct: 120 LAAAGLAFAAGFGVPRWL 137
>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 56/137 (40%), Gaps = 5/137 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRKE 59
++ + L V+V + Y +++ + + V R A R + RR++
Sbjct: 2 EMQTLALGFFAAVAVGGVAWVFIYPLLSGEKNVEKRLTSVARTTPAVRQVDRTQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++IE + + + +S +GL + + + S IG + +++ + +
Sbjct: 62 IEGSLKEIETRSQKQ--KNVPLGMRLSQAGLDWTPAKFGVVSAAIGVVVLGIAIMIGTGL 119
Query: 120 FTFLCVSVSSALVFPRF 136
+ ++ PR+
Sbjct: 120 VAAAGLGFAAGFGLPRW 136
>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
secretion [Sinorhizobium fredii NGR234]
gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 332
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADR----VIPTANTKRRKELREA 63
+ L + V + A FY + Q +V + + RR+ + +
Sbjct: 10 LIFFLASSFVGGLMLAAFYPRTVKASAYRQRFERVAGHTQINRTGSADESRDRRRSVEKT 69
Query: 64 IQKIELNHKA--KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ IE KA + G +++ + +GL S + Y++ G VL L F
Sbjct: 70 LRDIEEQQKAHVRKGRKPKLEARLRQAGLGWSTRAYWVACAGTGLAIYVLVALLGLGAFA 129
Query: 122 FLCVSVSSALVFPRF 136
L + + L P F
Sbjct: 130 ALGFATAGGLYLPHF 144
>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 324
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNA---KVVRADRVIPTANTKRRKE 59
++ + L + +V + Y ++ + A + A R + A RR++
Sbjct: 2 NLQTLALGFMAATAVGGVAWVFLYPALSGEMKAEKRRAAFARTTPAIRQVDRAQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++IE K +++ I+ +GL SK+ + I S V+ IC + + L +
Sbjct: 62 IEGSLREIEQRQKRDRK--LTLNHRIAQAGLSWSKEKFLIVSGVLAMICFSVPMILGAGP 119
Query: 120 FTFLCVSVSSALVFPRFF 137
++ ++ PR+
Sbjct: 120 LAAAGLAFAAGFGVPRWL 137
>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 56/137 (40%), Gaps = 5/137 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD---NAKVVRADRVIPTANTKRRKE 59
++ + L ++V + Y +++ + Q A+ R RR++
Sbjct: 2 EMQTLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++IE ++ + + + +S +GL + + + S +G +++ L +S
Sbjct: 62 IEGSLKEIETRNEKQ--KNVPLTAKLSQAGLDWTPGKFGVVSASLGIFMLGIAIILGASL 119
Query: 120 FTFLCVSVSSALVFPRF 136
+ ++ PR+
Sbjct: 120 PAAAGLGFAAGFGLPRW 136
>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 332
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 6/134 (4%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAK-VVRADRVI----PTANTKRRKELRE 62
F+ L + S+ + A FY ++ + Q A+ A+ RR+ + +
Sbjct: 10 FVFLLASTSIGGVMVAAFYPRVSKASAYRQRLARMSAPAENKRSEPTEPDGRDRRRSVEK 69
Query: 63 AIQKIEL-NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
+++IE ++ + + SGL S + Y++ L L +
Sbjct: 70 TLREIEEKRQANARKGKTTLTARLRQSGLHWSPKTYFVVCACAALASWCAMLLLDTGALV 129
Query: 122 FLCVSVSSALVFPR 135
++S L+ P
Sbjct: 130 SAGFAISGGLLLPH 143
>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 324
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 56/137 (40%), Gaps = 5/137 (3%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD---NAKVVRADRVIPTANTKRRKE 59
++ + L ++V + Y +++ + Q A+ R RR++
Sbjct: 2 EMQTLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQRSRREQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ +I++IE ++ + + + +S +GL + + + S +G +++ L +S
Sbjct: 62 IEGSIKEIETRNEKQ--KNVPLTAKLSQAGLDWTPGKFGVVSASLGIFMLGIAIILGASL 119
Query: 120 FTFLCVSVSSALVFPRF 136
+ ++ PR+
Sbjct: 120 PAAAGLGFAAGFGLPRW 136
>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 332
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTA----NTKRRKELREA 63
+ L ++ +YA+ Y + K + VV R + A + R+K + +
Sbjct: 13 IVPLLAALAFAGGIYALAYPYFSGDREKDKRLESVVGRSRKVGGALSEIQSSRKKSVADT 72
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL-TLSSSFFTF 122
++++E A ++ + +G+ + + +YIGS + G + G L L+
Sbjct: 73 LKEMEDRQNA--KKKITMGLRLERAGVKWTPRDFYIGSAIAGIVLGGLCFNFLNLPIAAT 130
Query: 123 LCVSVSSALVFPRF 136
+ A PR+
Sbjct: 131 VVALFVGAFGIPRW 144
>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
Length = 323
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR--ADRVIPTANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + A A RR+
Sbjct: 1 MSALNAPLAVGLVAVAAGSLAYVFLMPALSGERRAEQRRRALGQPQAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSAITAVVLALAAFLVSHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
Length = 340
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA-----DRVIPTANTKRR 57
++ + L+ ++V +Y++F ++ + Q V R +R+
Sbjct: 11 EITGLAVALLVMLAVGGIIYSLFQPALSGSKRRDQRVNAVAARPQSENQRKALRDVDRRK 70
Query: 58 KELREAIQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFIC-GVLSLT 114
+ +++ +++ E KAK + I +GL H+ I S V G + + +
Sbjct: 71 RSIQDQLKEFEERQKAKQDKQQKVPLKVKIEQAGLTWETHHFVIFSIVAGVVFLILGLII 130
Query: 115 LSSSFFTFLCVSVSSALVFPRFF 137
+ + + +L FPR++
Sbjct: 131 GGGNLYIAAGFGFAGSLGFPRWY 153
>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 326
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 19/142 (13%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQD------------NAKVVRADRVIPTANT 54
L +++ + + DS +Q +A +V
Sbjct: 4 ILAAVLAFITIAGLGWVF----VGGDDSSAQAIKRAEGFTSGTVRTARAKAAKVEANTPE 59
Query: 55 KRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT 114
RRK + +++ E + ++ + + +G+ + + ++I S +G + ++ L
Sbjct: 60 ARRKAIELQLKEAERKERKAR---MTMKARLKHAGMSMGIRTFWIISACLGVVAFLMPLV 116
Query: 115 LSSSFFTFLCVSVSSALVFPRF 136
+ F + +++ L PR+
Sbjct: 117 FGLNIFVAIGIALVVGLGLPRW 138
>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 327
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 43/97 (44%)
Query: 41 KVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIG 100
+ R +R+++++E+++ +E + + + SI + I +G+ + +++
Sbjct: 44 QRGRRQTSALDQAAQRKRQVQESLKDLEQRQRDQRKKSLSIKARIQQAGMSFTPAVFWMV 103
Query: 101 SCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
S + +++ S + + S L PR++
Sbjct: 104 SAGMAAAGLLIAFITGQSLLVTAGIGLVSGLGMPRWW 140
>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKEL 60
+ + + L ++V + Y ++ + Q A + R + R I RR+++
Sbjct: 3 IQTLAIAFLSAMAVGGLAWVFIYPSLSGQKTAEQRRASLARPEPVVRQIDRTQRSRREQV 62
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+++++E H+ + ++ + ++ +G+ + + + IGS V+G ++ L
Sbjct: 63 EGSLKEVEARHRKE--KKVALTTRLTQAGVKWTPKGFLIGSAVLGVTMFAITSLLGGGLL 120
Query: 121 TFLCVSVSSALVFPRF 136
L + ++ PR+
Sbjct: 121 AALALGFAAGFGLPRW 136
>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 340
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD----RVIPTANTKRRK 58
++ L L T +V + Y +++ A + RAD + + RR+
Sbjct: 17 NMQVLALAFLATAAVGGIAWVFLYPLLSGERKAENRRASIARADAPAAKQTEKSQRSRRE 76
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ +++ +E + + + ++ +S +GL + Q ++I S V+ + V ++ +
Sbjct: 77 QVETSLKDLEARRQQE--KSVPLNIRLSQAGLDWTPQKFWIVSAVVAGVLFVAAMFVGGG 134
Query: 119 FFTFLCVSVSSALVFPRF 136
++ + PR+
Sbjct: 135 LLGGAGLAFAGGFGLPRW 152
>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 326
Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 10/126 (7%)
Query: 19 CFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT-------ANTKRRKELREAIQKIELNH 71
+YA Y ++ + A + KRRK + E+++++E +
Sbjct: 17 GVMYAFVYPYLSGEIKAQKRTAALTSGRSERGAVAGRGTVDPAKRRKMIAESLKEVENQN 76
Query: 72 KAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSAL 131
K +++ I +GL + Q + IGS G + L ++ + +
Sbjct: 77 K---KKKLTLEQRIMQAGLTWTPQVFLIGSVAFGLLVAFFLLVVNGDIMVVIGGAAVGIF 133
Query: 132 VFPRFF 137
P +
Sbjct: 134 GLPNWL 139
>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 337
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDN---------AKVVRADRVIPTAN 53
D V L S YA + I+ + VV+A R
Sbjct: 5 DGTVLAFVVLAGFSAGAVAYAFLFTRISNEKQVGKRLETIRTAETDRSVVKASRDRVAEA 64
Query: 54 TKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
KRRK +++++ +++ K K + + + +GL + + +YI S + G + +
Sbjct: 65 AKRRKSVQDSLNELDAKQKTKDSRVKKPPLKAQLRQAGLKTTIERFYIYSAICGIVLTMA 124
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRFF 137
+ + V ++ L PR+F
Sbjct: 125 AFVAGAPLIALPGVLLAGGLGLPRWF 150
>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 327
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 5/136 (3%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQD----NAKVVRADRVIPTANTKRRKELRE 62
+ L S L A F+ + + + A + R + + +R++ ++E
Sbjct: 5 LLVFFLGAFSTGGLLLAAFHPRLARTSALDRRLQLVRASAGQTTRAAGSDDNRRKRSVQE 64
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL-TLSSSFFT 121
+++ E KAK S+ + + L SK YY +G + + +
Sbjct: 65 LLRETEQKQKAKNSAKLSLVMRLRQADLGWSKSTYYTICLTVGTLAFLAMWGLMGLGLLP 124
Query: 122 FLCVSVSSALVFPRFF 137
+ + ++ P +
Sbjct: 125 AVGFGLCGGMLLPHLY 140
>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 339
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK-----RRKELRE 62
+ LI +SV + + + + + + V + + +N K RRK +++
Sbjct: 16 LITALIMISVVGVTFTLLAPLFSKDKLGKRKESLVQKDISGLKGSNKKLDITARRKSVQD 75
Query: 63 AIQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+ +E AK N I +GL +K YY S + G + ++S+ S +
Sbjct: 76 QLNAMEAAQAAKKKNADKPIFADWIGQAGLNWTKPRYYAYSVICGVLLFLVSMLSGQSIW 135
Query: 121 TFLCVSVSSALVFPRFF 137
L + PRF+
Sbjct: 136 ISLALLFVGIFGLPRFY 152
>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 322
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVV----RADRVIPTANTKRRK 58
D S L ++V +YA+ Y ++ + A ++ R KRRK
Sbjct: 2 DRQSLIGATLAALAVGGVMYAVVYPYLSGDFKAQKRTAALMASGDRRREGRSADPAKRRK 61
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++++++ IE K +++ I+ +GL +S+ + IG+ V G + S L+
Sbjct: 62 MIQDSLKDIETKAKQ-----ITLEQRIAQAGLAVSRSLFMIGAGVAGLFAALFSFILNQD 116
Query: 119 FFTFLCVSVSSALVFPRF 136
+ V V+ + P +
Sbjct: 117 PLLAIGVGVAVGVGLPHW 134
>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
Length = 331
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 19 CFLYAIFYNVINPGDSKSQDNA-----KVVRADRVIPTANTKRRKELREAIQKIELNHKA 73
+ + + + A + R A ++R++++E ++++E + KA
Sbjct: 20 GLGWVFVGSSADKARKARLEGAVGGPVQSTRRRVGAVDAAAQKRRQIQEGLKELEDSQKA 79
Query: 74 KIGNTKSIDSLISCSGLPIS-KQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV 132
+ + ++ + + +GL + ++I S ++GF+ + + + + ++ + L
Sbjct: 80 ERKKSLTLRARLDQAGLFKTGPTQFWIFSAILGFVAAFMVVVTGLNILFAVAAAIIAGLG 139
Query: 133 FPRF 136
PR+
Sbjct: 140 LPRW 143
>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 325
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNA-----KVVRADRVIPTANTKRRKELREA 63
++G IT++ F + + + ++Q + ++ N RR+ + +A
Sbjct: 8 VLGFITIAGLGFAFVGDDSQASKAAKRAQVIGAGGVDRQAAKNKPAANPNEVRRQTILKA 67
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
+++ E K T SI + + +GL + + +++ S + ++ L L + + L
Sbjct: 68 LKEQERKQKKA---TLSIAARMQAAGLGPNVRLFWMVSLGLAVGVILIVLALGQTVWIAL 124
Query: 124 CVSVSSALVFPRFF 137
++ L PR+
Sbjct: 125 GAGFAAGLGLPRWL 138
>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 14/142 (9%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD-----------RVIPTANTK 55
++ + +S F + A+ + +
Sbjct: 1 MMIILIAFLSFVILASVGFVLTSGGASEVAAKRAQAIGMGATTAAKRKSQRTAANRTPEE 60
Query: 56 RRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
RRK++ +++ E + S+ + + +GL + + ++I S +G V+ L +
Sbjct: 61 RRKQILLQLKESEQRERKAR---LSLTARLQHAGLTPNVKTFWIWSVALGIAAAVIVLVV 117
Query: 116 SSSFFTFLCVSVSSALVFPRFF 137
S L + PR++
Sbjct: 118 SRIPLAALGAGFAFGYGAPRWW 139
>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 333
Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK-----RRKELRE 62
F+ L + S+ + A FY ++ + Q ++ + + RR+ + +
Sbjct: 10 FVFLLASTSIGGMMVAAFYPRVSKASAYRQRFERISARAEDKRSEPAETDGRDRRRSVEK 69
Query: 63 AIQKIEL-NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLS-LTLSSSFF 120
+++IE ++ + + SGL S++ Y++ V+ L L
Sbjct: 70 TLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAYFLVCAGAALATWVVMLLLLGLGPL 129
Query: 121 TFLCVSVSSALVFPRFF 137
+ +++ L+ P +
Sbjct: 130 VSVGFAIAGGLLLPHLY 146
>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
Length = 325
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIP--------TANTKRRKEL 60
++G IT++ F+ A + + DR + RRK++
Sbjct: 8 VLGFITIAGLGFVLAGGD---GGSAKTVKRAQLIAGGDRQAVAARAKAAANSPDARRKQI 64
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+ +++ + K + SI + + +GL + ++++I S VIG G + L L
Sbjct: 65 LKTLKEQDQQKKKA---SLSIAARLRAAGLGDNTRNFWIISGVIGLTAGAILLLLRQMPL 121
Query: 121 TFLCVSVSSALVFPRF 136
L + + PR+
Sbjct: 122 IALGAAFGAGFGLPRW 137
>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 333
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK-----RRKELRE 62
F+ L + S+ + A FY ++ + Q ++ + + RR+ + +
Sbjct: 10 FVFLLASTSIGGMMVAAFYPRVSKASAYRQRFERISARAEDKRSEPAETDGRDRRRSVEK 69
Query: 63 AIQKIEL-NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLS-LTLSSSFF 120
+++IE ++ + + SGL S++ Y++ V+ L L
Sbjct: 70 TLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAYFLVCAGATLATWVVMLLLLGLGPL 129
Query: 121 TFLCVSVSSALVFPRFF 137
+ +++ L+ P +
Sbjct: 130 VSVGFAIAGGLLLPHLY 146
>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 336
Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 27 NVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIGN 77
I +V ++A R +KRRK ++++++++E + K N
Sbjct: 29 PRIETEKKTEGRLLRVSAAETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSAN 88
Query: 78 T-KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+ S+ + + L IS +Y+ S + G V+ + V +++A PR+
Sbjct: 89 SAPSMKKRLLQANLSISVAQFYLFSALFGLFTFVVVFLAGAGALIAAGVGLTAAAGLPRW 148
>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 322
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANT-KRRKE 59
M ++S + GL+ V+ YA ++ ++ + V RR +
Sbjct: 1 MTSLDSLIVAGLLAVAAAALAYAFIVPLLPEQARAAKRQQAIAGRRPVAERIQAVNRRDQ 60
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++++E K S+D ++ SGL I+K +Y S + + V L LS S
Sbjct: 61 VAKSLKELENKEKKAR---PSLDLRLTQSGLSITKPQFYAFSGIAAGLSAVTMLLLSGSL 117
Query: 120 FTFLCVSVSSALVFPRFF 137
L + + L P++
Sbjct: 118 LLCLATAFVAGLGLPQWL 135
>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQ--DNAKVVRADRVIPT----------ANT 54
L +++ + + DS Q A+ + +
Sbjct: 4 ILAAVLAFITIGGLGWVF----VGGDDSSGQAVKRAQNLGEGKRNAAKARKAAAAANTPE 59
Query: 55 KRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT 114
RRK++ +Q+ E + N + + + +GL IS + +YI S +G I V +L
Sbjct: 60 ARRKQIMVQLQEAERRERKARAN---MAAKLKQAGLTISVRTFYIVSGGVGLIAAVAALA 116
Query: 115 LSSSFFTFLCVSVSSALVFPRF 136
L +++ L PR+
Sbjct: 117 FGLHVLIVLGLAIVVGLGLPRW 138
>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 331
Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 12/138 (8%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDN-------AKVVRADRVIPTANTKRRKEL 60
+ GL VSV +A Q A A RRK++
Sbjct: 9 LIAGLAFVSVVGVGFAF---TGGGTTKAQQKRFKQVAVGAGSGGKKNSSVDATLMRRKQM 65
Query: 61 REAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
+++++ + + +T+ +I ++ +G I +++ S V G + ++ L +
Sbjct: 66 QDSMKTLRERENKRRKDTRGRTIKDKLAQAGWTIEPAMFWVLSAVTGVVVAGITFVLGQT 125
Query: 119 FFTFLCVSVSSALVFPRF 136
+ AL PR+
Sbjct: 126 PLIIAGAGFAGALGLPRW 143
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADR------VIPTANT 54
M ++ LVGL V V YA+ YN I + ++ +
Sbjct: 1 MNNMQMLILVGLAVVVVGALAYALLYNSIASDKKSKERMQRLQMDKKTKMKVESRKMDEK 60
Query: 55 KRRKELREAIQKIE-LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL 113
+RRK A++ ++ K K ++ ++ +G IS +Y+ S VIG + ++L
Sbjct: 61 QRRKSREAALKNVDDQKSKGKTAGKETFREILEQAGFTISLGKFYVVSAVIGILFFFIAL 120
Query: 114 TL-SSSFFTFLCVSVSSALVFPRFF 137
++ V PR++
Sbjct: 121 VFMGATLPIAGGVGFVMGFGAPRWW 145
>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
Length = 325
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQD-----NAKVVRADRVIPTANTKRRKELREA 63
++G IT++ F +A + + ++Q + + RR+ + +A
Sbjct: 8 ILGFITIAGLGFAFAGGDSASSKAAKRAQIIAKGGERQANVRAKAAANTPDARRQAILKA 67
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
++ + K + SI + + +GL + + ++I S +G ++ L L S L
Sbjct: 68 LKDQDRKQKKA---SLSIAARLQAAGLGDNVKMFWIVSGTLGLFIAMIILLLGQSPLVAL 124
Query: 124 CVSVSSALVFPRF 136
++ PR+
Sbjct: 125 GAGFAAGAGLPRW 137
>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
Length = 323
Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 11/136 (8%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
LITV +F L A + + P K+Q R + + K + +K
Sbjct: 3 IIQTLLITVVIFSALVAGYILLTGPAAGKAQKRRLEALRYRHSESTDAK----VESQFKK 58
Query: 67 -IELNHKAKIGN------TKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
I T++++ + +G + Y + I + GVL + +
Sbjct: 59 AIAARKPKAHKVAGSGSRTEALEVRLDRTGKGWTVSQYLYVTLGIILVVGVLLYIQTGAP 118
Query: 120 FTFLCVSVSSALVFPR 135
F L L P
Sbjct: 119 FLSLAAGAFVGLGLPH 134
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 328
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 3/136 (2%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRV---IPTANTKRRKE 59
D+NS+ LVGLI++SVF LY + + S + K V D+ IP+A KRRK
Sbjct: 4 DINSFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRKV 63
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
LR+A+ KIEL+HK K GNTKS+ SLIS SG+P SK+H+YI SCV+G + G++SL L SSF
Sbjct: 64 LRDAMDKIELSHKEKFGNTKSLSSLISYSGIPFSKEHFYIFSCVMGLVFGIISLALFSSF 123
Query: 120 FTFLCVSVSSALVFPR 135
F LCV +SSALV PR
Sbjct: 124 FVSLCVCLSSALVVPR 139
>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 337
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 21/149 (14%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVV------------RADRVIPTAN 53
+ + L V + +A K R + +
Sbjct: 4 TLLIAFLGFVVIASVGFAFIGGGGGGNSGGGAALTKRTQTIGLGTNMRGKRGGKSAAKSP 63
Query: 54 TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL 113
+RRK++ E +++ E + ++ S + +GL + ++I + V+G + V+ L
Sbjct: 64 EERRKQITEQLKEAEKRERKAR---LTLRSRMLHAGLTPNVTQFWIITAVLGVVAFVVPL 120
Query: 114 TLSSS------FFTFLCVSVSSALVFPRF 136
L L + + PR+
Sbjct: 121 VLLGKMDFMLRLLVALGAGFALSYGAPRW 149
>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 327
Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 51 TANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGV 110
RRK++ +Q+++ + ++ + + +GL +S + + I S G + +
Sbjct: 57 NTPEARRKQILLQLQEVDRRERKAR---MTMGAKLKQAGLSLSVRTFVIISVAAGLVGAL 113
Query: 111 LSLTLSSSFFTFLCVSVSSALVFPRF 136
L+ L ++ L V V++ L PR+
Sbjct: 114 LAFVLGANIIIVLGVGVAAGLGLPRW 139
>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 26/151 (17%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADR--------VIPTANTKRRKE 59
+ L +++ + D ++ A+ + A R + N +RR +
Sbjct: 5 IVAALAFLAIAGLGLVL----TGGNDDAARKRARAISAGRGGAPVKGGKVVDENIRRRAK 60
Query: 60 LREAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
+E ++ + K + N +I S ++ +GL I +++ S V G IC + +
Sbjct: 61 TQEMLEGLRRQDKERRRNDPMRNIGSKLTQAGLEIPVPMFWLLSAVCGLICAGIVYISGA 120
Query: 118 SFFTF-----------LCVSVSSA-LVFPRF 136
+ + L P+F
Sbjct: 121 DGLVINGISLKSRPVLIAAAFFGGTLGIPQF 151
>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
Length = 323
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 11/123 (8%)
Query: 21 LYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK-IELNHKAKIGNTK 79
+ + + P +K R + +TK + ++K I
Sbjct: 17 MVVGYSALSGPNAAKESQRRLNAVRYRHSESTDTK----VESQLKKAIAARKPKAHRIAG 72
Query: 80 S------IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVF 133
S ++ + +G + Y+ S +G VL S + L V
Sbjct: 73 SASRIEALELRLDRTGKGWTVSQYFYASLGVGLTVAVLIFLRSGALLLSLGVGAVIGAGL 132
Query: 134 PRF 136
P F
Sbjct: 133 PHF 135
>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
Length = 332
Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
D N + L+ + A P K++ R +A +R
Sbjct: 2 DGNVILIAVLLAAMLGMVAMAFA----GPSPEKARKRRVATIRGRHGESAEALLEARMRR 57
Query: 63 AIQKIELNHKAKIGNTK-----SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
AI +AK+ + ++ I +G + Y +I + L
Sbjct: 58 AISNRPTGAEAKMLVSLVPNPDNLTKRIKMTGKKWTLSQYMTACAIIFLLITALLALRGF 117
Query: 118 SFFTFLCVSVSSALVFPRFF 137
FF + V ++ L P ++
Sbjct: 118 PFFFAMLVGAAAGLGLPHWW 137
>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 332
Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 9/138 (6%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI 64
N + L+ + + A P K+Q + R + + +R+AI
Sbjct: 4 NIILMAVLLATMLGLVVMAF----SGPSPEKAQKRRMELIRGRHSDSTDAILEARMRKAI 59
Query: 65 QKIELNHKAKIGNTK-----SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
++A + + ++ I +G + Y VI L +
Sbjct: 60 SNRPAGNEASMLVSLVPNPENLAKRIRMTGKKWTVSQYMTACAVIFLALCALLMLRGFPP 119
Query: 120 FTFLCVSVSSALVFPRFF 137
+ + +++ L P +
Sbjct: 120 LFAVMLGLAAGLGLPHMW 137
>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 332
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 31/149 (20%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI 64
N + L+T + A P K++ + R +A+
Sbjct: 4 NLILMAVLLTTMLGLIAMAFA----GPSPDKARKRRMELIRGRHSDSADAI--------- 50
Query: 65 QKIELNHKAKIGNTKS----------------IDSLISCSGLPISKQHYYIGSCVIGFIC 108
+E + I N + + I +G + Y VI +
Sbjct: 51 --LEARMRKAISNRPTGAESTMLVSLVPNPENLAKRIRMTGKKWTVSQYMTSCAVIFLVL 108
Query: 109 GVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
L + + + + +++ L P +
Sbjct: 109 CALLMLRGFAPLFAVMLGLAAGLGLPHMW 137
>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 324
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 6/138 (4%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M + L+ + YA P SK + R + K +
Sbjct: 1 MTSIIQLLLMSTGLMVAMVLGYAAL---SGPSASKEVNRRLQSVRFRHSESTLDKVEAQY 57
Query: 61 REAI---QKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
R+ + + + ++++ + +G + Y S + + +L +
Sbjct: 58 RKTLAARKPKTMRPAGSSSRLEALELRLHRTGKGWTLSQYLYVSGGLAILIFLLVYLRTG 117
Query: 118 SFFTFLCVSVSSALVFPR 135
+ L + P
Sbjct: 118 APLLALGSGIFIGGGLPH 135
>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADR--VIPTANTKRRKELRE 62
N GL+ ++V Y ++ ++ + + RR+++ +
Sbjct: 6 NLPIAAGLVGIAVAAVAYVAVLPLLGGERRANKRLKSISVSASGAATRGVAVNRREQVAK 65
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
+ +IE K S++ ++ +GL +KQ +Y S + G + G+L ++ +
Sbjct: 66 TLSEIEAKAKGASKA--SVELKLARAGLGWTKQTFYGMSALSGVVFGLLLFVITDN 119
>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
Length = 323
Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI-- 64
GL+ ++ P K+ R + + K +L++AI
Sbjct: 8 LVAGGLLVLATLGVSA-----FAGPSAGKASQRRLQQVRYRHSESTDAKVESQLKKAIAS 62
Query: 65 -QKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
+ + +++ + +G S Y S +G V+ S S L
Sbjct: 63 RKPKQFKQAGSGSRLEALAVRLDRTGKGWSLSQYAYASLGVGMAVAVILFLRSGSLPLSL 122
Query: 124 CVSVSSALVFPRF 136
+ + P F
Sbjct: 123 ALGTFAGAGIPHF 135
>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
JL354]
Length = 323
Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 6/136 (4%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
DV F++ L ++ + A P K R AN + ++++
Sbjct: 2 DVIQLFILSLGFLAAIGLVAAALA---GPSTRKQLQRRLSGVRTRHTDDANARVESQMKK 58
Query: 63 AI---QKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
A+ + ++++ + +G+ + + Y S + + G++ +
Sbjct: 59 ALAARKPKIQKAAGNGSRSQALALRLQATGMGWTVKQYVYASIGLAVMIGMIVYAQTGVP 118
Query: 120 FTFLCVSVSSALVFPR 135
+ P
Sbjct: 119 LLSAIAGLLIGAGVPH 134
>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 323
Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 9/131 (6%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
L+ + + +A + P ++ R + K + R+A+
Sbjct: 8 LMAIGLTVAAWAGITLFMGPNPARESSRRLQAVKLRHSESTTDKVEAQYRKAL---AARK 64
Query: 72 KAKIGNTKS------IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCV 125
S + + +G + Y S + + G S S L +
Sbjct: 65 PKAYKLAGSSSRLEALSLRLDRTGRGWTISQYLYASLGLVILFGGFVWIKSGSLVLGLAL 124
Query: 126 SVSSALVFPRF 136
++ P F
Sbjct: 125 GIAIGAGLPHF 135
>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 324
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 7/135 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK- 66
L L + + + + + P ++ R +++R+ +
Sbjct: 1 MLTMLFLMVMAAVVPVFIFVLARPPAQRAFARRLSTVRGRYNVNGEPGVNEQVRKLLASR 60
Query: 67 --IELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+ K + I I +G + + YY GS + +L + + +
Sbjct: 61 ATVVRREKTLLNRFLPDPADIHHQIEAAGKKWTVRQYYTGSGFAFAVPMLLLMLVGLPAW 120
Query: 121 TFLCVSVSSALVFPR 135
L V ++ L PR
Sbjct: 121 MALIVGAAAGLGLPR 135
>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 310
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 5/120 (4%)
Query: 20 FLYAIFYNVI-NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT 78
+A+ ++ P K++ + DR + ++R+ IQ + + + +
Sbjct: 1 MAFAVLAILLQGPSAGKAKSRRLAMVKDRHAASTEAVVAAQMRKTIQSVGRRGNSSLTSL 60
Query: 79 KS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
++ I +G + Y S + + L + + F V + +L P
Sbjct: 61 LPRREELEKRIRRTGKSWTLTQYMFASMGLFVVATGAMLIVRAPFPMAALVGLLISLGLP 120
>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 331
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 7/132 (5%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA---DRVIPTANTKRRKELREA 63
V L+T++V +++F + P + A V +RK ++
Sbjct: 15 LVAVMLVTLAV--LGWSLFTLLHGPRARLKRRLAAVAGGSHGAERRLAGRMPQRKSVQAR 72
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
++ +E + + +G + HY GS + L L +
Sbjct: 73 LKAVEG--ARARNFGWRLREQLLQAGWNLEVWHYLAGSGGLTLAVFALGQVLGLAMVWSG 130
Query: 124 CVSVSSALVFPR 135
++ + P+
Sbjct: 131 LAALCLGVGVPK 142
>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
Length = 330
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 21 LYAIFYNVINPGDSKSQDNAKVVR--ADRVIPTANTKRRKELREAIQKIELNHKAKIGNT 78
+A+ + P + A V +RK ++ ++ +E + + G
Sbjct: 27 GWALVSLIHGPRARLKRRLAAVAGGQTSSRRTAVRGPQRKSVQARLKAVEGSRQRHFGWR 86
Query: 79 KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
+ +G + Y G V+ + + ++ L P+
Sbjct: 87 --FREQLMQAGWRLEVWQYLAGCAVLALLVLGIGEASGLPLVWSGLAALCLGLGIPK 141
>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 322
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 13/128 (10%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRR-----KELRE 62
L L V Y + P + + + + + + K+R +
Sbjct: 10 ILAFLAVVLFLEGAYLAWNAYKGPEAKRIERRLEAMTLGKEHESTLVKQRMLANTPGVAS 69
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTF 122
+Q++ + +D + SGL S + + + ++L ++
Sbjct: 70 MLQQVPRIQQ--------LDKALLQSGLQYSVAKFLGICLMFAVVGFAIALYFGANVLVS 121
Query: 123 LCVSVSSA 130
+ V+ +A
Sbjct: 122 IIVAAVAA 129
>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 327
Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 9/138 (6%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT--------ANTKRR 57
S ++ VF L + P S+SQ RV A R
Sbjct: 2 SMVATLILAAGVFLALVLAMAALSGPSASRSQSRRLAGLRGRVALDLDTPVSPLAAASRG 61
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
L + ++ + N + + ++ +G + Y I + +L +
Sbjct: 62 IALATDTR-VDKAFGRLLPNPEKLAKRLNRTGRDWTVGQYGIACAAVAVGSTILLAMIGL 120
Query: 118 SFFTFLCVSVSSALVFPR 135
L + V L+ P
Sbjct: 121 PLLLALPMGVGLGLLVPH 138
>gi|218682228|ref|ZP_03529829.1| probable pilus assembly protein [Rhizobium etli CIAT 894]
Length = 90
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 26 YNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
++ I + +V V+A R +KRRK +++ ++ +E K
Sbjct: 28 FSRIEADKKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTK 87
Query: 77 NTK 79
T
Sbjct: 88 KTL 90
>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 325
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 1/127 (0%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
L L V +Y + + + + + + A + + K+ +
Sbjct: 10 VLAFLAVVLAIEAVYLFWSSHHGKDVKRMDERIRALSAGGNVSSQQLSILKQRMLSESPF 69
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSV 127
+I ++D + SGL S + + + + + L +V
Sbjct: 70 VTQLLLRIPRVHALDRQLQQSGLKWSVARFVTYTLLCAVLGALGGFVLLLPAPVMGVFAV 129
Query: 128 SSALVFP 134
++L P
Sbjct: 130 VASL-LP 135
>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
Length = 325
Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 6/139 (4%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+++ + L + Y + S++ ++ +A + + +
Sbjct: 1 MDTLVIGFVLSVFVAIALGVSGLYLWWDSSHSQTAKRLSQRLKMALLSSARHGGDESILK 60
Query: 63 AIQKIELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E A + +D ++ SGL S + S + + V L+
Sbjct: 61 QRVLAESPEVAAMLGRLPRIAQLDRILLQSGLNWSAGRFLALSLGLPVVVIVGMSPLNPP 120
Query: 119 FFTFLCVSVSSALVFPRFF 137
+ L ++V++ P F+
Sbjct: 121 WMATLALAVAAG-SLPSFY 138
>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 322
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 2/135 (1%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQ-DNAKVVRADRVIPTANTKRRKELRE 62
++ L+ +V A+ Q ++ A + ++ +
Sbjct: 3 QDATLFYILLFFAVVFISQALILPAAGSKAKHKQLSQRLKESQAKLDEEARSLLQEHYMK 62
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTF 122
++ ++ + S+ I SG S + ++ ++ L L F+
Sbjct: 63 SLTPMDRRLVKVPLFS-SLKKTIELSGYDWSLGQTLAVTLILSVCAFLIVLLLGQPFYIG 121
Query: 123 LCVSVSSALVFPRFF 137
L SV + +
Sbjct: 122 LAASVGIWFILYFWL 136
>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 325
Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 5/132 (3%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ F ++T Y N + + + R + +
Sbjct: 1 MNTIFYGFVILTFVAVVLAIEGGYQWWNARHGSAARRIESRIRSMSAGGNVQQERLSILK 60
Query: 63 AIQKIELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E ++ +D +I SGL + + S V V +
Sbjct: 61 KRMLDESKPFDRLLLRLPRVHRLDLVIQQSGLDWTLPKLIMLSVVFAAFAWVALSFATLP 120
Query: 119 FFTFLCVSVSSA 130
L V++ +
Sbjct: 121 QLAALPVALFAG 132
>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 317
Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 52/137 (37%), Gaps = 20/137 (14%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQ 65
+ + GL+ ++VF + A ++ + ++ + + R + +
Sbjct: 2 TALIAGLVFLTVFGLVLAFYFGYEDLKQARKDQLIRSLTVGRRRG-----------DRMP 50
Query: 66 KIELNHKAKIGNTK--------SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
+ E + T +++LI + +S + +++ S GF+ +L L L
Sbjct: 51 EEEAVRQETRFLTMLLTRVDLSGLETLIQSAWAGLSLERFFLVSVCCGFVFMLLPLLLFG 110
Query: 118 SFFTFLCVSVSSALVFP 134
+ ++ ++ L P
Sbjct: 111 NAVLSF-LAFAAGLCLP 126
>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 652
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 3/133 (2%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKS-QDNAKVVRADRVIPTANTKRRKE-LREAI 64
W G I V++ I + + RV + K + E +
Sbjct: 332 WIAAGTIGVAILLLAIGILTPSFATRREQRLASLESYMGQTRVASRSEGKHHSAPIAEQL 391
Query: 65 QKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIG-SCVIGFICGVLSLTLSSSFFTFL 123
+T LI+ + LP+ +++ S + + L S
Sbjct: 392 VNFGERAMKGRSSTARTMELINRADLPLRPGEWWVLRSVAVLSGVAIGMLLFGGSALLGA 451
Query: 124 CVSVSSALVFPRF 136
+ P F
Sbjct: 452 ALGFMLGYFLPAF 464
>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
Length = 303
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 4/129 (3%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
LV L + Y + ++++ + + PT K + + A +
Sbjct: 6 LLVLLFACAAGGMTYVLAGEPFRKPLARARMSIAARKGMHAKPTQRMKIAEAIDRAGEAF 65
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL----SLTLSSSFFTFL 123
E K+ ++ + + +GL I+ + S I ++ +L L
Sbjct: 66 EKVIPLKLSESRELQDKLDLAGLKITPSTWRAISLGITIFTAIMLAGAALVGGYGIAMAL 125
Query: 124 CVSVSSALV 132
V + A+
Sbjct: 126 LVGIIGAVG 134
>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 325
Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 6/139 (4%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+++ + L + Y + S++ ++ +A + + +
Sbjct: 1 MDTLAIGFVLSVFVAIALGVSGLYLWWDSRHSQTAKRLSQRLKMALLSSARHGGDESILK 60
Query: 63 AIQKIELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E A + +D ++ SGL S + + + + V L+
Sbjct: 61 QRVLAESQEVAAMLGQLPRIHQLDLILLQSGLNWSAGRFLALTLGLPVVVIVGVSPLAPP 120
Query: 119 FFTFLCVSVSSALVFPRFF 137
+ L ++V++ P F+
Sbjct: 121 WMATLALAVAAG-SLPSFY 138
>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 325
Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 35/132 (26%), Gaps = 5/132 (3%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ F ++T Y N + + + R + +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGAAARRIESRIRAMSAGGNVQQERLSILK 60
Query: 63 AIQKIELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E ++ +D +I SGL + S + ++
Sbjct: 61 KRMLDESKPFDRLLLRLPRVHALDLVIQQSGLDWTLPKLITLSATFAALAWFVASFARMP 120
Query: 119 FFTFLCVSVSSA 130
+ V++ +
Sbjct: 121 QLAAVPVALVAG 132
>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 325
Score = 41.9 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 35/132 (26%), Gaps = 5/132 (3%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ F ++T Y N + + + R + +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGAAARRIESRIRAMSAGGNVQQERLSILK 60
Query: 63 AIQKIELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E ++ +D +I SGL + S + ++
Sbjct: 61 KRMLDESKPFDRLLLRLPRVHALDLVIQQSGLDWTLPKLITLSATFAALAWFVASFARLP 120
Query: 119 FFTFLCVSVSSA 130
+ V++ +
Sbjct: 121 QLAAVPVALVAG 132
>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 325
Score = 41.9 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 35/132 (26%), Gaps = 5/132 (3%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ F ++T Y N + + + R + +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGAAARRIESRIRAMSAGGNVQQERLSILK 60
Query: 63 AIQKIELNHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E ++ +D +I SGL + S + ++
Sbjct: 61 KRMLDESKPFDRLLLRLPRVHALDLVIQQSGLDWTLPKLITLSATFAALAWFVASFARLP 120
Query: 119 FFTFLCVSVSSA 130
+ V++ +
Sbjct: 121 QLAAVPVALVAG 132
>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 322
Score = 41.9 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 35/136 (25%), Gaps = 4/136 (2%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA 63
++ L+ +V A+ G + R
Sbjct: 3 QDATLFFVLLFFAVVFISQALILP--AAGSKAKHKELSERLKESQSKLDEEARSLLQEHY 60
Query: 64 IQKIE--LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ + KI S+ +I SG S + + ++L + +
Sbjct: 61 LKSLTPWDRRLVKIEALSSLKKMIELSGYDWSLTQTLMITSFASVCGFFIALLIGQPIYV 120
Query: 122 FLCVSVSSALVFPRFF 137
+ V+ + +
Sbjct: 121 GIAAIVAVWVCLYFWL 136
>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 325
Score = 41.5 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 37/132 (28%), Gaps = 5/132 (3%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ F ++T Y N + + + R + +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGTAARRIESRIRAMSAGGNVQQERLSILK 60
Query: 63 AIQKIELNHKAKIGNTK----SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E ++ ++D +I SGL + S + ++ +
Sbjct: 61 KRMLDESKPFDRLLLRLPRVHTLDLVIQQSGLDWTLPKLITLSATFAALTWFVASFMRLP 120
Query: 119 FFTFLCVSVSSA 130
+ +++ +
Sbjct: 121 QLVAVPLALFAG 132
>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 41.5 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 4/122 (3%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL 69
++T Y N + + + + R + + E
Sbjct: 8 FVILTFVAVVLAIEGVYQWWNARHGAAARRIESRLRAMSAGGSVQQERLSILKKRMLDES 67
Query: 70 NHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCV 125
++ +D ++ SGL + + S V+ ++ T L +
Sbjct: 68 KPFDRLLMRVPRIQALDLVLQQSGLDWTVAKLVVISAVLAVTAALVLTVSPLPLITVLPI 127
Query: 126 SV 127
++
Sbjct: 128 AL 129
>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
Length = 317
Score = 41.5 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQ 65
F +T S+ + ++ + + + R ++
Sbjct: 7 MLFTFVGVTFSIVSIGWIVYDLFFSVRHRADDRL-------KDAFYDEMRSRSNASPLLR 59
Query: 66 KIELNHKAKIGNTKSIDSL----ISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ + N++S+ + + SG ++ + + + S + + G +++SFF
Sbjct: 60 ELSNANAGFTFNSRSLTTRFKTWLEQSGSQLTPRDFVLSSLCLAALGGGGIFYVTNSFFL 119
Query: 122 FLCVSVSSALVFP 134
+ + + L P
Sbjct: 120 AP-LGMIAGL-LP 130
>gi|149173328|ref|ZP_01851958.1| hypothetical protein PM8797T_21328 [Planctomyces maris DSM 8797]
gi|148847510|gb|EDL61843.1| hypothetical protein PM8797T_21328 [Planctomyces maris DSM 8797]
Length = 485
Score = 41.5 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 4 VNSWFLVGLITV-SVFCFLYAIFYNVINPGDSKSQDNAKV---VRADRVIPTANTKRRKE 59
++ + G+ V +V C F ++ A R P A R ++
Sbjct: 79 MSQRIMTGISVVMAVCCIAVVGFAWILVQESRVVNQKMLAHLATIAGRPQPVAAVGREQQ 138
Query: 60 LREAIQKI-ELNHKAKIGNTKSIDS---LISCSGLPISKQHYYIGSCVIG 105
+ + ++++ E A +++ ++ + S + G+ G
Sbjct: 139 ILDQLKELKEEQQAAANASSEDMNQISFQLVQDNKDKSPAAGFTGTLTKG 188
>gi|289616194|emb|CBI56990.1| unnamed protein product [Sordaria macrospora]
Length = 1134
Score = 41.5 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 14 TVSVFCFLYAIFYNV-INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK 72
+S+ + A + D AK V A++ + A KRR+E+++ I+K+
Sbjct: 1028 AISIDGLIQASEALRRVVQRDEVEARRAKAVEAEKEMSLAREKRREEMQQQIKKLAEAQA 1087
Query: 73 AKIGNTKSIDSLI 85
K ++ +
Sbjct: 1088 QKTAAAPAVADQV 1100
>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 314
Score = 41.5 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M +VN + +T+ Y + ++ ++ T +R K L
Sbjct: 1 MDNVNLPLITVGVTLLCCVLGVMGLYAYSGGKADRDALVERLSHVGQIPETGRIRRFKGL 60
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
++ L K ++ ++ +GL I+ + + + V +++ SS
Sbjct: 61 DRRLRGTALGRK--------LELKLAATGLDITPGEFLVYAVVAMAGLWMIA----SSML 108
Query: 121 TFLCVSVSSALVF 133
V++ +
Sbjct: 109 AAFFGPVAALIGL 121
>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 295
Score = 41.1 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
+ LI S +Y +F + + P K + D + + R +
Sbjct: 3 MMVALLIGCSAGFAVYLLFASRLFPSYRKIEK-----PPDSSVDANVSDRMAAAASFVSN 57
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS--------SS 118
+ +A+ N + + I+ +GL + +Y S ++ + + L S +S
Sbjct: 58 MLPLSRAQERN---LRNQIAAAGLNMKPSTFYGLSVILSLLGMIALLVFSPYIVGSDTTS 114
Query: 119 FFTFLCVSVSSALVFPR 135
F V V++ ++ PR
Sbjct: 115 LLLFNAVVVAAGILGPR 131
>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 322
Score = 40.7 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 9/108 (8%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTK--S 80
A+ Q ++ + + I + + +++ + + + +
Sbjct: 22 ALILPSAGKKVKHKQLIQRIQDSHKHIDQESISLLR--ENSLKHLSPLERWLVNFSLFDG 79
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ + +G+ + + S + G G++ ++ + V+V+
Sbjct: 80 LKKKLELAGISMGFTRFLFLSFLAGVAVGLVIFIFGQEWYMCVGVTVA 127
>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
BCW-1]
Length = 312
Score = 40.7 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
+ T+ A + +++ ++ + + +R + ++
Sbjct: 6 VVTVGATLVCGALGVAGVHTYARGKEAQQALFDRLSDTGSLPLSGRPRRFARVDRRLRST 65
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF--TFLCV 125
L K ++ ++ +GL I+ +++ + ++ +L ++FF V
Sbjct: 66 RLGRK--------LELRLASTGLDITPGEFFVYTAGAAIGLWAVAASLLAAFFGPIAAVV 117
Query: 126 SVSSALVFPRF 136
+V SA F +
Sbjct: 118 AVWSAFAFLNW 128
>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 325
Score = 40.7 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 1/127 (0%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
L L V +Y + + + G + + + + A + + K +
Sbjct: 10 VLAFLAVVLSIEGVYLFWTSHHSKGVKRMDERIRALSAGGNVSSEQLSILKRRMLSDSPF 69
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSV 127
+ ++ ++D + SGL S + + + L +
Sbjct: 70 VTSLLLRMPRVHALDRQLQQSGLKWSVARFIAYTLLSALTGAFAGFVLHVPAPVLGVFAA 129
Query: 128 SSALVFP 134
+ L P
Sbjct: 130 VAGL-LP 135
>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 325
Score = 40.7 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 12/126 (9%), Positives = 36/126 (28%), Gaps = 6/126 (4%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL 69
++T Y N + + + + R + + + ++
Sbjct: 8 FVILTFVAVVLAIEGVYQWWNARHGNAARRIESRLRAMSAGGSVQQERMSILKK-RMLDE 66
Query: 70 NHKAKI-----GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLC 124
+ +S+D ++ SGL + + S + ++ L
Sbjct: 67 SKPFDRLLLRVPRVQSLDLVLQQSGLDWTVAKLVVLSGALCAATALVLSVTPLPLVAVLP 126
Query: 125 VSVSSA 130
V++ +
Sbjct: 127 VALFAG 132
>gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 324
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 12/127 (9%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
L ++V ++++ +++ KS+ + D++ + + +A +
Sbjct: 12 LAAFLAMIAVTGTIFSLVMPLLSRDTLKSRMKNVALERDKLRAKERARLQTSQGDARMSL 71
Query: 68 ELNHKAKIGNTK------------SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
KAK+ N S + +G S YY + I G+ L
Sbjct: 72 RNQPKAKMKNFVDRLNLKEMLADDSTQDRLRMAGYRGSAPIYYFLTARIAIPGGLFVFAL 131
Query: 116 SSSFFTF 122
+ +F
Sbjct: 132 AYAFLLA 138
>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 321
Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 34/123 (27%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
+ I V+ A + + A + A + L+ +
Sbjct: 6 ILIASFIGVACLVGGVASMFLRTEQATAVEDRLAVLTGAAQPNTKGKQADTNVLQTPLDD 65
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+ + +I + + + +S +++ S + I V+ + +
Sbjct: 66 MPSVIEEYFSKYFNIRAFLQQADTQLSPSRFFLVSVIAAIIGMVIVAVCRVPIYLAPLGA 125
Query: 127 VSS 129
+
Sbjct: 126 IMG 128
>gi|325188848|emb|CCA23376.1| alpha putative [Albugo laibachii Nc14]
Length = 1632
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
+ + K+ + + + G Y+ I + ++ + + F L
Sbjct: 269 LATFRERFRQKMRESPGTN-RLDQMGKKGMLVTLYMIQMTIAYFAMLVVMIYETGLFIAL 327
Query: 124 CVSVSSALVF 133
+ + +
Sbjct: 328 MMGFCTGFLL 337
>gi|228949330|ref|ZP_04111593.1| hypothetical protein bthur0007_54460 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228989137|ref|ZP_04149155.1| hypothetical protein bthur0001_57500 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770564|gb|EEM19111.1| hypothetical protein bthur0001_57500 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228810313|gb|EEM56671.1| hypothetical protein bthur0007_54460 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 308
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 11/134 (8%), Positives = 46/134 (34%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA 63
+ V ++ ++ F + ++ + + ++ + T+ K L
Sbjct: 13 IQIPLFVYILLFAIVFFAVLTLTSKKGSQNNNYLKFVEEIEKEKSQASQQTQLEKYLTPL 72
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
++ K + + + + + +Y+ + IC + L + ++ +
Sbjct: 73 LKLTNSKIKISASKEEELRRKFKEANMSMDPASFYMYKILYPVICFIFLLFIGMAYDNTI 132
Query: 124 CVSVSSALVFPRFF 137
+ +++ + F+
Sbjct: 133 ILIMAAGSILTYFY 146
>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 312
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 47/136 (34%), Gaps = 11/136 (8%)
Query: 4 VNSWFLVGL-ITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
++ L T+ + + + + ++ + T +R +
Sbjct: 1 MDHLATAALGATLVCGALGVVGVHTYVRGKEQQRALIDRLSETGPLPGTGRARRFAGVDR 60
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF-- 120
++ L K ++ ++ +GL I+ +++ + +++ + ++FF
Sbjct: 61 RLRTTSLGRK--------LELRLAATGLEITPGEFFVYTAGAAAGLWLIAASFLAAFFGP 112
Query: 121 TFLCVSVSSALVFPRF 136
++V A F +
Sbjct: 113 IAAVIAVWGAFAFLGW 128
>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 321
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 6/135 (4%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M D+ +F++ V A+ G + + R
Sbjct: 1 MDDITYFFILLFFAVVF--ISQALILP--AAGSKAKHKELAQRLKETQMNLDQEARSLLQ 56
Query: 61 REAIQKIELNHKA--KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ + ++ K S+ I SGL S +I L +
Sbjct: 57 EHYLKSLSPQDRSLVKFAVFASLKKSIELSGLDWSLTQTLTVCSIISVSIMSTLALLGQA 116
Query: 119 FFTFLCVSVSSALVF 133
+F L V V
Sbjct: 117 WFLVLAGGVVVWFVL 131
>gi|240279612|gb|EER43117.1| DUF726 domain-containing protein [Ajellomyces capsulatus H143]
gi|325092739|gb|EGC46049.1| DUF726 domain-containing protein [Ajellomyces capsulatus H88]
Length = 1137
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + Q +V + V + + K + +A++ E K
Sbjct: 466 TVLCDLFLVLIADSTYDARSRQLLERVGESLNVSWSQICRFEKRVIDALEMQEEKSKETW 525
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
+++++ + K+ Y I + + G L + LS+ + +++
Sbjct: 526 DEAENMEARRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 576
>gi|85076201|ref|XP_955894.1| hypothetical protein NCU03330 [Neurospora crassa OR74A]
gi|28881167|emb|CAD70349.1| conserved hypothetical protein [Neurospora crassa]
gi|28916922|gb|EAA26658.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1137
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 14 TVSVFCFLYAIFYNV-INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK 72
+S+ + A + D AK V +R + A KRR+E+++ I+++
Sbjct: 1031 AISIDGLIQASEALRRVVQRDEVEARRAKAVDLEREMSLAREKRREEMQQQIKRLAEAQA 1090
Query: 73 AKIGNTKSIDSL 84
K + ++
Sbjct: 1091 PKTAGSPAVADR 1102
>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
MSR-1]
Length = 279
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 46 DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIG 105
R A R+ +Q E + + + +G+ + + + + I
Sbjct: 3 GRKSTIAAAAPRRRSLHRLQSGEQGRGRRWAGQ--MREQLMRAGIRMDVRLWLGLNVAIA 60
Query: 106 FICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
+ +++L L + ++ S PR
Sbjct: 61 VLVWLVALGLKAPPLLGPLLAASLGFGLPR 90
>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
Length = 325
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 9/135 (6%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELR 61
F ++ + + L ++V Y + + + + K+ A V K+
Sbjct: 8 FALSVFIAMMLAVLAV----YLWWDSRHSSAARRFSHRLKMALASSVSHGGTDSILKQRM 63
Query: 62 EAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS--SF 119
+ ++ +++D + SGL S + S + + ++++ S
Sbjct: 64 LSESPEVAAMLGRLPRIQTLDRRLLQSGLDWSVSRF---SALTLMVPAMIAIVFSLFDPP 120
Query: 120 FTFLCVSVSSALVFP 134
L V V + P
Sbjct: 121 PMTLLVFVLAGASLP 135
>gi|158285756|ref|XP_308445.4| AGAP007387-PA [Anopheles gambiae str. PEST]
gi|157020146|gb|EAA04266.4| AGAP007387-PA [Anopheles gambiae str. PEST]
Length = 449
Score = 39.2 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 23/57 (40%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ + ++ + + ++L ++KIE K + T+ + LIS +
Sbjct: 212 DAEHERRRKEQLKKLFDRTSKQVEEEQQLLNELKKIEARKKERERKTQDLQKLISQA 268
>gi|225562797|gb|EEH11076.1| DUF726 domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 1140
Score = 38.8 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + + +V + V + + K + +A++ E K
Sbjct: 466 TVLCDLFLVLIADSTYDARSRRLLERVGESLNVSWSQICRFEKRVIDALEMQEEKSKETW 525
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
+++++ + K+ Y I + + G L + LS+ + +++
Sbjct: 526 DEAENMEARRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 576
>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 38.8 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 4/122 (3%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL 69
++T Y N + + + + R + + E
Sbjct: 8 FVILTFVAVVLAIEGVYQWWNARHGAAARRIESRLRAMSAGGSVQQERLSILKKRMLDES 67
Query: 70 NHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCV 125
++ +D ++ SGL + S V+ + L +
Sbjct: 68 KPFDRLLMRVPRIQALDLVLQQSGLDWTVAKLVTISAVLPVTAALALAVTPLPLIAVLPI 127
Query: 126 SV 127
++
Sbjct: 128 AL 129
>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 325
Score = 38.8 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 5/133 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELR 61
F ++ + + L ++V Y + + + K+ A V K+
Sbjct: 8 FALSVFIAMMLAVLAV----YLWWDTRHSSAARRFSHRLKMALASSVSHGGTDSILKQRM 63
Query: 62 EAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
+ ++ +++D + SGL S ++ + ++ + ++ T
Sbjct: 64 LSESPEVAAMLGRLPRIQTLDRRLLQSGLDWSVSRFFALTLMVPAMIAIVFSLFDPPPMT 123
Query: 122 FLCVSVSSALVFP 134
L V V + P
Sbjct: 124 LL-VFVLAGASLP 135
>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 330
Score = 38.8 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA-- 63
S + + + + Y ++ + PG K + + A + +
Sbjct: 14 SVLVFVTVLMVIEGL-YMLWRSYRGPGVQKIGKRLQALSAATDRIAQARLVKDRVLSEAP 72
Query: 64 -IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIG-FICGVLSLTLSSSFFT 121
+Q++ L +D I +GL + H + + G ++ + +
Sbjct: 73 WMQRVLLKLPRAHR----LDRFILQAGLEWTVSHVLLACALSGMLFFFAMTSLANQPAWI 128
Query: 122 FLCVSVSSAL 131
L VS + A
Sbjct: 129 ALLVSAAGAA 138
>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
Length = 322
Score = 38.8 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 4/126 (3%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA 63
++ L+ +V A+ Q + ++ D R
Sbjct: 3 QDATLFYILLFFAVVFISQALILPAAGSKAKHKQLSQRL--KDSQANLDEEARSLLQEHY 60
Query: 64 IQKIE--LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ + K S+ I SG S + ++ ++ L + F+
Sbjct: 61 MKSLTPMDRRLVKYELFSSLKKTIELSGYDWSLSQTLAVTFILSICAFMVVLLIGQPFYV 120
Query: 122 FLCVSV 127
+ S+
Sbjct: 121 GIASSI 126
>gi|254496627|ref|ZP_05109492.1| hypothetical protein LDG_1061 [Legionella drancourtii LLAP12]
gi|254354149|gb|EET12819.1| hypothetical protein LDG_1061 [Legionella drancourtii LLAP12]
Length = 433
Score = 38.8 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGL 90
++Q + A R +RRKE EA ++ E + + D+ + GL
Sbjct: 242 KEQEEAQRRKEQEEAQRRKEQEEAQRRKEQEEAQRRKEQEDSLQRRKVQEEDARRAQIGL 301
>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 38.4 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 4/122 (3%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL 69
++T Y N + + + + R + + E
Sbjct: 8 FVILTFVAVVLAIEGVYQWWNARHGAAARRIESRLRAMSAGGSVQQERLSILKKRMLDES 67
Query: 70 NHKAKIGNTKS----IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCV 125
++ +D ++ SGL + S V+ + L +
Sbjct: 68 KPFDRLLMRVPRIQALDLVLQQSGLDWTVAKLVAISAVLPVTAALALAVTPLPLIVVLPI 127
Query: 126 SV 127
++
Sbjct: 128 AL 129
>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 325
Score = 38.4 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 37/121 (30%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQ 65
S L+ V +Y + + P + + V A + K A
Sbjct: 8 SIILLFAAVVLATGGVYEYWNSRHGPVARRVDSRIRAVSAGGPMSRQRLSILKTRTMAES 67
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCV 125
+ +I ++D + SGL S ++ V+ ++ +L +
Sbjct: 68 AVLARLLLRIPRVHALDLFLQQSGLSWSVGRFFGTCAVLPPFVLIVGASLRVPWVFTAGA 127
Query: 126 S 126
+
Sbjct: 128 A 128
>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 322
Score = 38.4 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 8/108 (7%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIE--LNHKAKIGNTKS 80
A+ Q ++ + + I + + +++ + + S
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLR--ENSLKNLSPLERWLVRFSLFDS 79
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ +G+ + + + + G G+ ++ V+ +
Sbjct: 80 FKKKLELAGIHMGFSRFIFLTFLGGTAVGLFLFLFGQVWYLCAGVAFA 127
>gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 333
Score = 38.4 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 21/144 (14%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQ------DNAKVVRADRVIPTANTKRRKELR 61
+ LITV+VF + I V++ KS+ + + +R A + RR LR
Sbjct: 15 LIGALITVAVFATVVTILMPVLSGSALKSRMKSVATEREAIRSRERARLAAESDRRNSLR 74
Query: 62 EAIQK-----IELNHKAKIGNTKSIDSLISCSGL----PISKQHY------YIGSCVIGF 106
++ +E + + + + +G P++ + + +
Sbjct: 75 HQQKQGIREFVERLDLKRALADEKTIASLRQAGFRGQNPLNIFLFLRFVLPFGAMLIAAI 134
Query: 107 ICGVLSLTLSSSFFTFLCVSVSSA 130
+L + +FF L V + +
Sbjct: 135 YIFMLGVLADQTFFVRLLVCIFAG 158
>gi|186686684|ref|YP_001869878.1| hypothetical protein Npun_CR023 [Nostoc punctiforme PCC 73102]
gi|186469569|gb|ACC85367.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length = 1018
Score = 38.0 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 19/65 (29%)
Query: 91 PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV------------------ 132
P + + + I + V + G+L L L F L ++ ++L
Sbjct: 20 PFTGRQFVIFAGVFCVVFGLLCLILGLDIFWGLGLAFWASLSVAFLSGDKPYLYWSKVYP 79
Query: 133 -FPRF 136
PR+
Sbjct: 80 ILPRW 84
>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
Length = 325
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 9 LVGLITVSVFCFLYAIFYNV--INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
I V + + +++N +Q + + + ++ +
Sbjct: 10 ASLFIAVVLGAIGFYLWWNSRHSPTAKRLNQRLEMALFSLSGKDAQTSILKQRVLAESTD 69
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
I +I + ++D + SGL S + + + + ++ + L ++
Sbjct: 70 I-ARLLQRIPHVNALDMTLLQSGLDWSVSRFLTLTLALPVVACTVAALFAPPLVLLLGIA 128
Query: 127 VSSALVFP 134
+ P
Sbjct: 129 ALAGA-LP 135
>gi|327350196|gb|EGE79053.1| DUF726 domain-containing protein [Ajellomyces dermatitidis ATCC
18188]
Length = 1147
Score = 38.0 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + + +V A V + + K + +A++ E K
Sbjct: 481 TVLCDLFLVLLADSTYDARSRRLLERVGDALDVSWSQICRFEKRVIDALEMQEEKSKETW 540
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
+ +++ + K+ Y I + + G L + LS+ + +++
Sbjct: 541 DEAEHMEARRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 591
>gi|239609565|gb|EEQ86552.1| DUF726 domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 1147
Score = 38.0 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + + +V A V + + K + +A++ E K
Sbjct: 481 TVLCDLFLVLLADSTYDARSRRLLERVGDALDVSWSQICRFEKRVIDALEMQEEKSKETW 540
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
+ +++ + K+ Y I + + G L + LS+ + +++
Sbjct: 541 DEAEHMEARRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 591
>gi|261196678|ref|XP_002624742.1| DUF726 domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239595987|gb|EEQ78568.1| DUF726 domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 1147
Score = 38.0 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + + +V A V + + K + +A++ E K
Sbjct: 481 TVLCDLFLVLLADSTYDARSRRLLERVGDALDVSWSQICRFEKRVIDALEMQEEKSKETW 540
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
+ +++ + K+ Y I + + G L + LS+ + +++
Sbjct: 541 DEAEHMEARRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 591
>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 314
Score = 38.0 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 42/133 (31%), Gaps = 12/133 (9%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M +VN + +T+ + + ++ ++ T +R K
Sbjct: 1 MDNVNLPLVTVGVTLLACVLGVIGLHAYSGGKADRDALVDRLSHVGQIPETGRRRRFKGF 60
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
++ + ++ ++ +G+ ++ +++ + ++SS
Sbjct: 61 DRRLR--------ATALGRKLEMKLAATGMDVTPGEFFVY----ALVAMAGLWMVASSLL 108
Query: 121 TFLCVSVSSALVF 133
V++ +
Sbjct: 109 AAFFGPVAALIGL 121
>gi|21283456|ref|NP_646544.1| hypothetical protein MW1727 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486608|ref|YP_043829.1| hypothetical protein SAS1710 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|21204897|dbj|BAB95592.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
gi|49245051|emb|CAG43513.1| putative exported protein [Staphylococcus aureus subsp. aureus
MSSA476]
Length = 303
Score = 38.0 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD--NAKVVRADRVIPTANTKRRK 58
M D++S ++GLI V ++ + + V K + K + ++ I ++ + +
Sbjct: 1 MMDLSSPIVIGLIIAVVIALIFFVLFLVTLGSKKKVKRQTEEKYEQQEQNIKKSHEEALE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSL 84
+ R +K + + S
Sbjct: 61 KERIQNKKTITKQQEDYNHMVSTKDR 86
>gi|168008775|ref|XP_001757082.1| Paf1 complex protein [Physcomitrella patens subsp. patens]
gi|162691953|gb|EDQ78313.1| Paf1 complex protein [Physcomitrella patens subsp. patens]
Length = 999
Score = 38.0 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK-AKIGNTKSIDSLISC 87
+ + + Q + R + A RRK E ++E + A+ ++ +
Sbjct: 836 LEAAEREEQQLRQKQEVARQLAMAQEARRKAEEERRLQLEKRRRDAEQRIALQLEDKLQQ 895
Query: 88 SGLPISKQH 96
+ +K+
Sbjct: 896 TKALWNKKT 904
>gi|224070913|ref|XP_002303293.1| predicted protein [Populus trichocarpa]
gi|222840725|gb|EEE78272.1| predicted protein [Populus trichocarpa]
Length = 975
Score = 38.0 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
+ ++ +N + A + R +L I+++ HK +I + L+
Sbjct: 711 LEKERQRAAENKQEYLAAKEEADTQEGRANQLEGQIKELRQKHKEEIQDALINRELLQQ 769
>gi|225560101|gb|EEH08383.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 426
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDSLI 85
+ + Q K ++ + +RR +L + + +++E AK T + ++
Sbjct: 216 VGETKKQRQRRLKNENRKAMVEESERERRIQLEKHLHTARELERREAAKSKPTPATNAWQ 275
Query: 86 SCS 88
+ +
Sbjct: 276 TSA 278
>gi|154279890|ref|XP_001540758.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412701|gb|EDN08088.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1091
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + + +V + V + + K + +A++ E K
Sbjct: 420 TVLCDLFLVLIADSTYDARSRRLLERVGESLNVSWSQICRFEKRVIDALEMQEEKSKETW 479
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
++++ + K+ Y I + + G L + LS+ + +++
Sbjct: 480 DEAGNMEARRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 530
>gi|222099107|ref|YP_002533675.1| hypothetical protein CTN_0133 [Thermotoga neapolitana DSM 4359]
gi|221571497|gb|ACM22309.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
Length = 758
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 49 IPTANTKRRKELREAIQ----KIELNHKAKIGNTKSIDSLISCSGLPISK-----QHYYI 99
+ + R E+ ++ +IE + I + + +S +
Sbjct: 302 VENEHRARMNEISSRLKRPLEEIERQMNTINERLEKIGDRMKKADRTLSVFKVLVSVFLT 361
Query: 100 GSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S V S + F +L + + + +
Sbjct: 362 FSVVSAVFIF----LASKNPFIYLTFAGAGGALLSIW 394
>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 321
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 6/135 (4%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M D+ +F++ V A+ G + + R
Sbjct: 1 MDDITYFFVLLFFAVVF--ISQALILP--AAGSKAKHKELSQRLKETQMNLDEEARSLLQ 56
Query: 61 REAIQKIE--LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ + K+ S+ I SGL S + +I V + L+
Sbjct: 57 EHYLKSLSPLDRSLVKVAAFASLKKSIELSGLDWSLAQTLMVCSIISLTTIVTMVILAQP 116
Query: 119 FFTFLCVSVSSALVF 133
++ + +
Sbjct: 117 WYLAVAGGSAIWFAL 131
>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 312
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 10/131 (7%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
L T+ A + D + ++ + P ++R + ++
Sbjct: 6 MLTLGTTLVCGALGVAGVHTYARGTDRQRALIDRLSESGAAAPAGRSRRFARVDRRLRT- 64
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF--TFLCV 125
+ ++ ++ +GL I+ +++ + ++ +L +SFF +
Sbjct: 65 -------TSLGRRLELRLAATGLDITPGEFFVYTAAAAAGLWAVAASLLASFFGPIAAVI 117
Query: 126 SVSSALVFPRF 136
+V SA + +
Sbjct: 118 AVWSAFGYLNW 128
>gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
Length = 314
Score = 37.7 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 11 GLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI-QKIEL 69
++ +VF + K V R ++ R L+ + + +E
Sbjct: 4 AIVVFTVFMLAIIFI------STKEKMKEDKSVLTMRKSQASSKLRENALKLKLERMVET 57
Query: 70 NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSS 129
K N +++++ +G ++ + + S + +L L ++S+ C+ +
Sbjct: 58 KAKVSTKN--TVETMCLQAGYKLTYGEFKLMSFTSAIVLPILVLVMTSNPILA-CLFIMV 114
Query: 130 ALVFP 134
+ P
Sbjct: 115 GYMIP 119
>gi|262050418|ref|ZP_06023255.1| hypothetical protein SAD30_1776 [Staphylococcus aureus D30]
gi|259161488|gb|EEW46093.1| hypothetical protein SAD30_1776 [Staphylococcus aureus D30]
Length = 303
Score = 37.3 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD--NAKVVRADRVIPTANTKRRK 58
M D++S ++GLI V ++ + + V K + K + ++ I ++ + +
Sbjct: 1 MMDLSSPIVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSL 84
+ R +K + + S
Sbjct: 61 KERIQNKKTITKQQEDYNHMVSTKDR 86
>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 322
Score = 37.3 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 43/136 (31%), Gaps = 10/136 (7%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M + GLI ++V + I+ V S + + + R+++
Sbjct: 1 MTISAEPLIYGLIFLAVLAIVEGIYLTVFGKSISLNNRVNRRLEMLEKGGG-----REQV 55
Query: 61 REAIQKIELNHKAKIGNTKS---IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT-LS 116
E ++K E++ + + + + S + + + +L
Sbjct: 56 LEQLRK-EMSQHMNSKGVPIYSLLAAKAQKANIAFSPPQLIMIMFGLSVVAFILLTVGTG 114
Query: 117 SSFFTFLCVSVSSALV 132
+S VS+ +
Sbjct: 115 ASAPIRAGVSLLMGVG 130
>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CMR15]
Length = 325
Score = 37.3 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 33/136 (24%), Gaps = 6/136 (4%)
Query: 4 VNSWFL-VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ + L Y + S++ ++ +A+ + + +
Sbjct: 1 MNTLMIGFLLSVFVAIALGVLGTYQWWSTHRSQTARRLSHRLQTALLNSASHDKEASILK 60
Query: 63 AI---QKIELNHKAKIGNTKSIDSL-ISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E + + + SGL S S + G L L
Sbjct: 61 QRVLSDSPEFAQLLQRLPRIDVVDRFLLQSGLDWSVGRLLGLSLASAVLAGGLVSLL-HP 119
Query: 119 FFTFLCVSVSSALVFP 134
+ P
Sbjct: 120 LWVAQLSITLMGASLP 135
>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 322
Score = 37.3 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 2/135 (1%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNV-INPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
++ L+ +V A+ + K ++ A + ++ +
Sbjct: 3 QDATLFFILLFFAVVFISQALILPAAGSKAKHKELSERLKESQSKLDEEALSLLQEHYLK 62
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTF 122
++ + + S+ LI SG S + + + + L + F+
Sbjct: 63 SLTPWDRRLVKIEAFS-SLKKLIELSGYDWSLTQTLLVTSSLSLCGFLTVLLIGQPFYIG 121
Query: 123 LCVSVSSALVFPRFF 137
L V + +
Sbjct: 122 LAAIVGVWVCLYFWL 136
>gi|149633025|ref|XP_001505330.1| PREDICTED: similar to MICAL C-terminal like [Ornithorhynchus
anatinus]
Length = 885
Score = 37.3 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 5/65 (7%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRR----KELREAIQKIELNHKAKIGNTKSI 81
+++ + K+ +A + + +R + ++ ++++E +A +
Sbjct: 698 VSLLPKERQTLRRRRKLEKASKQLVKQEELKRLYTAQAIQRQLEEVEERQRAAEIQGVKL 757
Query: 82 DSLIS 86
+ +
Sbjct: 758 EKALR 762
>gi|254411452|ref|ZP_05025229.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
7420]
gi|196181953|gb|EDX76940.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
7420]
Length = 292
Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 4/62 (6%), Positives = 20/62 (32%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+++ + +R +R ++ R+ ++ + + + + G+
Sbjct: 228 ERQRAEQERQRAEQERQRAEQERQRAEQERQRAEQEHQRAEQAEQKSARLAERLRAMGID 287
Query: 92 IS 93
Sbjct: 288 PD 289
>gi|154288032|ref|XP_001544811.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408452|gb|EDN03993.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 348
Score = 37.3 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDSLI 85
+ + Q K ++ + +RR +L + + +++E AK T + ++
Sbjct: 213 VGETKKQRQRRLKNENRKLMVEESERERRIQLEKHLHTARELERREAAKSKPTPATNAWQ 272
Query: 86 SCS 88
+ +
Sbjct: 273 TSA 275
>gi|327349437|gb|EGE78294.1| hypothetical protein BDDG_01231 [Ajellomyces dermatitidis ATCC
18188]
Length = 483
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDS 83
+ + Q K +++ A +RR +L + + ++ E AK + ++
Sbjct: 264 EKVTETKKQRQRRIKNENRKKMVEDAERERRIQLEKQLHTAREHERREAAKSKPPPAANA 323
Query: 84 L 84
Sbjct: 324 W 324
>gi|240278852|gb|EER42358.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325090110|gb|EGC43420.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 426
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDSLI 85
+ + Q K ++ + +RR +L + + +++E AK T + ++
Sbjct: 216 VGETKKQRQRRLKNENRKVMVEESERERRIQLEKHLHTARELERREAAKSKPTPATNAWQ 275
Query: 86 SCS 88
+ +
Sbjct: 276 TSA 278
>gi|239608248|gb|EEQ85235.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 483
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDS 83
+ + Q K +++ A +RR +L + + ++ E AK + ++
Sbjct: 264 EKVTETKKQRQRRIKNENRKKMVEDAERERRIQLEKQLHTAREHERREAAKSKPPPAANA 323
Query: 84 L 84
Sbjct: 324 W 324
>gi|261203445|ref|XP_002628936.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239586721|gb|EEQ69364.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 489
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDS 83
+ + Q K +++ A +RR +L + + ++ E AK + ++
Sbjct: 270 EKVTETKKQRQRRIKNENRKKMVEDAERERRIQLEKQLHTAREHERREAAKSKPPPAANA 329
Query: 84 L 84
Sbjct: 330 W 330
>gi|157691479|ref|YP_001485941.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032]
gi|157680237|gb|ABV61381.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Bacillus pumilus SAFR-032]
Length = 627
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRK-ELREAIQ--KIELNHKAKIGNTKSIDSLISCS 88
K Q + A++ + A KR+K ++ ++ IE +A + +++ I+ +
Sbjct: 528 EQEKEQKRTETKPAEKQVEAAPKKRKKLSYKDQLEWDGIEDRIQALEEKHQQLEASIAEA 587
Query: 89 GLPISKQH 96
G K
Sbjct: 588 GSDFGKIQ 595
>gi|301106006|ref|XP_002902086.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098706|gb|EEY56758.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 863
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREA-IQKI----ELNHKAKIGNTK 79
+ + + + R + KRR+E+ + +Q+ E + +
Sbjct: 114 DAEREKQLRREAKKQRAKELEDAKRREEVEKQALQEAQRVEEQKQREARQKQQ 166
>gi|217033179|ref|ZP_03438632.1| hypothetical protein HPB128_184g2 [Helicobacter pylori B128]
gi|298736233|ref|YP_003728759.1| hypothetical protein HPB8_738 [Helicobacter pylori B8]
gi|216945088|gb|EEC23795.1| hypothetical protein HPB128_184g2 [Helicobacter pylori B128]
gi|298355423|emb|CBI66295.1| hypothetical protein predicted by Glimmer/Critica [Helicobacter
pylori B8]
Length = 181
Score = 37.3 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 7 WFLVGLITVSVF-CFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKE------ 59
F+VG ++V L A F + K + KR K
Sbjct: 3 PFIVGGAILAVGFGVLAAFFDVETEKEKERQNTLKKDIENYTHKAQQAKKRHKHQQTLKI 62
Query: 60 -------LREAIQKIELNHKAKIGNTKSIDSLISC 87
++ +Q+IE + K +++++
Sbjct: 63 ADHCLNIIQRYLQEIERLQQEKKETPTQLEAVLEQ 97
>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
Length = 325
Score = 37.3 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 30/99 (30%)
Query: 30 NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
P + + + + A + KE K ++ +++D LI SG
Sbjct: 32 GPAARRIEARIRAMSAGGQVQKERLSILKERMLNDAKPFDRLLMRMPRVQTLDLLIEQSG 91
Query: 90 LPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
L S S I F V + SV+
Sbjct: 92 LTWSVVKLAWISLAIPFAAFVALSFAPLPLWVAAVASVA 130
>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
Length = 322
Score = 37.3 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 9/108 (8%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTK--S 80
A+ Q ++ + + I + + +++ + + + +
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHDSHKHIDEESISLLR--ENSLKNLSPLERWLVNFSLFDG 79
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ + +G+ + + S + G G++ ++ L V+++
Sbjct: 80 LKKKLELAGISMGFTRFLFLSFLAGTAVGLIIFVFGQVWYMCLGVTIA 127
>gi|300728558|ref|ZP_07061916.1| tetratricopeptide repeat domain protein [Prevotella bryantii B14]
gi|299774127|gb|EFI70761.1| tetratricopeptide repeat domain protein [Prevotella bryantii B14]
Length = 556
Score = 36.9 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI 64
N+ V + T+ + C Y + + V +A +R + +
Sbjct: 333 NTLIFVVMTTILLACVAYIFYV-----------RRRNKHLKEVVSLSAELQRVSNDEQQL 381
Query: 65 -QKIELNHKAKIGNTKSIDS 83
+ IE K + KS++
Sbjct: 382 RKDIEQKEKELARSKKSLEK 401
>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
Length = 325
Score = 36.9 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 31/99 (31%)
Query: 30 NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
P + + + + A + KE K ++ +++D LI SG
Sbjct: 32 GPAAKRIEARIRAMSAGGQVQKERLSILKERMLNEAKPFDRLLMRVPRVQTLDLLIEQSG 91
Query: 90 LPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
L S S I F+ V + S++
Sbjct: 92 LTWSVVKLAWISLAIPFVVFVALSFTPLPLWVAAVASIA 130
>gi|282917044|ref|ZP_06324802.1| hypothetical protein SATG_00537 [Staphylococcus aureus subsp.
aureus D139]
gi|283770862|ref|ZP_06343754.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus H19]
gi|282319531|gb|EFB49883.1| hypothetical protein SATG_00537 [Staphylococcus aureus subsp.
aureus D139]
gi|283461009|gb|EFC08099.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus H19]
Length = 303
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD--NAKVVRADRVIPTANTKRRK 58
M D++S ++GLI V ++ + + V K + K + ++ I ++ + +
Sbjct: 1 MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSL 84
+ R +K + + S
Sbjct: 61 KERIQNKKTITKQQEDYNHMVSTKDR 86
>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
Length = 325
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 31/99 (31%)
Query: 30 NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
P + + + + A + KE K ++ +++D LI SG
Sbjct: 32 GPAAKRIEARIRAMSAGGQVQKERLSILKERMLNEAKPFDRLLMRLPRVQTLDLLIEQSG 91
Query: 90 LPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
L S S I F+ V + S++
Sbjct: 92 LTWSVVKLAWISLAIPFVAFVALSFTPLPLWVAAVASIA 130
>gi|49484031|ref|YP_041255.1| hypothetical protein SAR1869 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425897|ref|ZP_05602321.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428564|ref|ZP_05604962.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257433879|ref|ZP_05610237.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
gi|257436796|ref|ZP_05612840.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus M876]
gi|258422758|ref|ZP_05685662.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|282904359|ref|ZP_06312247.1| hypothetical protein SFAG_01810 [Staphylococcus aureus subsp.
aureus C160]
gi|282906184|ref|ZP_06314039.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282909101|ref|ZP_06316919.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911409|ref|ZP_06319211.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914578|ref|ZP_06322364.1| hypothetical protein SAWG_01788 [Staphylococcus aureus subsp.
aureus M899]
gi|282919546|ref|ZP_06327281.1| hypothetical protein SASG_00852 [Staphylococcus aureus subsp.
aureus C427]
gi|282924925|ref|ZP_06332591.1| hypothetical protein SARG_01812 [Staphylococcus aureus subsp.
aureus C101]
gi|283958539|ref|ZP_06375990.1| hypothetical protein SHAG_01764 [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293503656|ref|ZP_06667503.1| hypothetical protein SCAG_02178 [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510672|ref|ZP_06669377.1| hypothetical protein SAZG_01327 [Staphylococcus aureus subsp.
aureus M809]
gi|293537213|ref|ZP_06671893.1| hypothetical protein SAVG_01929 [Staphylococcus aureus subsp.
aureus M1015]
gi|295428360|ref|ZP_06820989.1| hypothetical protein SIAG_01684 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|49242160|emb|CAG40860.1| putative exported protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271591|gb|EEV03737.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275405|gb|EEV06892.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257281972|gb|EEV12109.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
gi|257284147|gb|EEV14270.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus M876]
gi|257847033|gb|EEV71043.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|282313291|gb|EFB43687.1| hypothetical protein SARG_01812 [Staphylococcus aureus subsp.
aureus C101]
gi|282317356|gb|EFB47730.1| hypothetical protein SASG_00852 [Staphylococcus aureus subsp.
aureus C427]
gi|282321759|gb|EFB52084.1| hypothetical protein SAWG_01788 [Staphylococcus aureus subsp.
aureus M899]
gi|282325104|gb|EFB55414.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327365|gb|EFB57660.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331476|gb|EFB60990.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595977|gb|EFC00941.1| hypothetical protein SFAG_01810 [Staphylococcus aureus subsp.
aureus C160]
gi|283790688|gb|EFC29505.1| hypothetical protein SHAG_01764 [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920058|gb|EFD97126.1| hypothetical protein SAVG_01929 [Staphylococcus aureus subsp.
aureus M1015]
gi|291095322|gb|EFE25587.1| hypothetical protein SCAG_02178 [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466563|gb|EFF09084.1| hypothetical protein SAZG_01327 [Staphylococcus aureus subsp.
aureus M809]
gi|295127760|gb|EFG57397.1| hypothetical protein SIAG_01684 [Staphylococcus aureus subsp.
aureus EMRSA16]
Length = 303
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD--NAKVVRADRVIPTANTKRRK 58
M D++S ++GLI V ++ + + V K + K + ++ I ++ + +
Sbjct: 1 MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSL 84
+ R +K + + S
Sbjct: 61 KERIQNKKTITKQQEDYNHMVSTKDR 86
>gi|15924779|ref|NP_372313.1| hypothetical protein SAV1789 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927363|ref|NP_374896.1| hypothetical protein SA1607 [Staphylococcus aureus subsp. aureus
N315]
gi|156980105|ref|YP_001442364.1| hypothetical protein SAHV_1774 [Staphylococcus aureus subsp.
aureus Mu3]
gi|257794167|ref|ZP_05643146.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258415871|ref|ZP_05682142.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258420700|ref|ZP_05683639.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|258438352|ref|ZP_05689636.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|258443810|ref|ZP_05692149.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258446019|ref|ZP_05694195.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448253|ref|ZP_05696380.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|258454219|ref|ZP_05702190.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|282893278|ref|ZP_06301512.1| hypothetical protein SGAG_00632 [Staphylococcus aureus A8117]
gi|282928518|ref|ZP_06336117.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|13701582|dbj|BAB42875.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
gi|14247561|dbj|BAB57951.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|156722240|dbj|BAF78657.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|257788139|gb|EEV26479.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257839464|gb|EEV63937.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257843304|gb|EEV67714.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|257848396|gb|EEV72387.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|257851216|gb|EEV75159.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257855261|gb|EEV78200.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858492|gb|EEV81368.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|257863671|gb|EEV86428.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|282589727|gb|EFB94812.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282764596|gb|EFC04722.1| hypothetical protein SGAG_00632 [Staphylococcus aureus A8117]
gi|285817468|gb|ADC37955.1| Hypothetical protein SA2981_1744 [Staphylococcus aureus 04-02981]
Length = 303
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD--NAKVVRADRVIPTANTKRRK 58
M D++S ++GLI V ++ + + V K + K + ++ I ++ + +
Sbjct: 1 MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSL 84
+ R +K + + S
Sbjct: 61 KERIQNKKTITKQQEDYNHMVSTKDR 86
>gi|160935091|ref|ZP_02082477.1| hypothetical protein CLOLEP_03967 [Clostridium leptum DSM 753]
gi|156866544|gb|EDO59916.1| hypothetical protein CLOLEP_03967 [Clostridium leptum DSM 753]
Length = 521
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ + V R +R I ++ + L + ++ +E +A TK ID ++
Sbjct: 77 QRLEAEREIADRRKDVQRQERRI----QQKEETLDKKLEHLEAKEEAINAKTKKIDERLA 132
Query: 87 CSGLPISKQHYYIGSCVIGF 106
+ + K + + + GF
Sbjct: 133 EAE-TVKKSQFEMLERISGF 151
>gi|207110311|ref|ZP_03244473.1| hypothetical protein HpylH_14565 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 103
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 7 WFLVGLITVSVF-CFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKE------ 59
F+VG ++V L A F + K ++ KR K
Sbjct: 3 PFIVGGAILAVGFGVLAAFFDAETEKEKERQNTLKKDIKDYTRKAQQAKKRHKHQQTLKI 62
Query: 60 -------LREAIQKIELNHKAKIGNTKSIDSLISC 87
++ +Q+IE + K + +++
Sbjct: 63 ADHCLNIIQRYLQEIERLQQEKKETPTQLKAVLEQ 97
>gi|268533860|ref|XP_002632059.1| C. briggsae CBR-MNAT-1 protein [Caenorhabditis briggsae]
gi|187023405|emb|CAP37460.1| CBR-MNAT-1 protein [Caenorhabditis briggsae AF16]
Length = 343
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 32 GDSKSQDNAKVVRADRVIPTA------------NTKRRKELREAIQKIELNHKAKIGNTK 79
D++ ++N V R I + +R+K++ + +++ + K K N +
Sbjct: 198 TDAREKENTTAVTDTRAIMDELRDSNVAAEVILDRERKKQIEKELEEKDEQEKRKRRNKE 257
Query: 80 SIDSLISCS 88
+ + +
Sbjct: 258 MLQTRKRAA 266
>gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 325
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQ------DNAKVVRADRVIPTANTKR---R 57
L + ++VF Y I + GD + + ++ +R + + R
Sbjct: 13 MILAVFVAIAVFATFYTIAVPFLERGDLNKRMKAVSTEREQIRARERARLNTDGSKASLR 72
Query: 58 KELREAIQKIELNHKAKIG-NTKSIDSLISCSGL--PISKQHYYIGSCVIGFICGVLS-- 112
+ + +++I + + + + +GL + + + ++ F+ ++
Sbjct: 73 SQNNKNVRQIVERFNLRNALVDTNTVNRLRAAGLRSENALNMFLVARFLLPFLFLAVAVF 132
Query: 113 LTLSSSFFTFLCVSV 127
L +F +
Sbjct: 133 LVFGLGYFAAKPFAF 147
>gi|293359913|ref|XP_234156.5| PREDICTED: bromodomain adjacent to zinc finger domain, 1A [Rattus
norvegicus]
Length = 1502
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ K + + + R+ E +++ E K K K + S + L
Sbjct: 592 QAKQEFRELKAEQHRKEREATAARIRRRKEEKLKEQEQKMKEKQEKLKEDEQRTSAADLG 651
>gi|281604112|ref|NP_001164039.1| bromodomain adjacent to zinc finger domain, 1A [Rattus norvegicus]
Length = 1553
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ K + + + R+ E +++ E K K K + S + L
Sbjct: 643 QAKQEFRELKAEQHRKEREATAARIRRRKEEKLKEQEQKMKEKQEKLKEDEQRTSAADLG 702
>gi|109479393|ref|XP_001079067.1| PREDICTED: bromodomain adjacent to zinc finger domain, 1A [Rattus
norvegicus]
Length = 1536
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ K + + + R+ E +++ E K K K + S + L
Sbjct: 626 QAKQEFRELKAEQHRKEREATAARIRRRKEEKLKEQEQKMKEKQEKLKEDEQRTSAADLG 685
>gi|149051245|gb|EDM03418.1| bromodomain adjacent to zinc finger domain, 1A (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 1041
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ K + + + R+ E +++ E K K K + S + L
Sbjct: 221 QAKQEFRELKAEQHRKEREATAARIRRRKEEKLKEQEQKMKEKQEKLKEDEQRTSAADLG 280
>gi|257431198|ref|ZP_05607575.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 68-397]
gi|257278146|gb|EEV08794.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 68-397]
Length = 303
Score = 36.5 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M D++S ++GLI V ++ + + V K + + + +K
Sbjct: 1 MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKR-----QTEEKYEQQEQNIKKSH 55
Query: 61 REAIQKIELNHKAKIGNTK 79
EA++K E K +
Sbjct: 56 EEALEK-ERIQNKKTITKQ 73
>gi|255530118|ref|YP_003090490.1| ATPase [Pedobacter heparinus DSM 2366]
gi|255343102|gb|ACU02428.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
2366]
Length = 614
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFY------------------NVINPGDSKSQDNAKV 42
M + W + GL+TV++ Y +N +K Q
Sbjct: 1 MKKRSLWLITGLMTVALLGVFVMQLYYIRQAYNLNSQLFEQDVNQALNAVVTKVQKRNAA 60
Query: 43 VRADRVIPTANTKRRKELREAIQKI--------ELNHKAKIGNTKSIDSLISCSGLPISK 94
+ R +R+ E+++ +++ E K + + I + ++ + L I K
Sbjct: 61 LHISRKDRQMELERKAEVQDQAKQLVEYKDRFKEEAQKRVLERQRLIVADLNQTDLEIRK 120
Query: 95 Q 95
Sbjct: 121 S 121
>gi|149638622|ref|XP_001514169.1| PREDICTED: similar to desmoplakin [Ornithorhynchus anatinus]
Length = 2826
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 22/53 (41%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
Q + + + + + RRK+L E ++ + + K + ++ + +
Sbjct: 1531 KQKVEEELNRLKKTASDESSRRKKLEEELEGMRRSLKEQAIKITNLTQQLEQA 1583
>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
Length = 322
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 8/108 (7%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIE--LNHKAKIGNTKS 80
A+ Q ++ + + I + + +++ + + +
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLR--ENSLKNLSPLERWLVRFSLFDN 79
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ +G+ + + + + G G+ ++ V+V+
Sbjct: 80 FKKKLELAGIHMGFSRFIFLTFLGGVAVGLFLFLFGQVWYLCAGVAVA 127
>gi|268325260|emb|CBH38848.1| hypothetical membrane protein [uncultured archaeon]
Length = 442
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 4/125 (3%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
W ++ + ++S+ + A Y D + A +++ A + E I
Sbjct: 177 WRIIVIYSLSLIILIAAAVYYSTRAADYTLLSRIQKEAASQILDIAIADDKDISSENITN 236
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+ + I N KS+ +S + S V G I ++ L S+ +
Sbjct: 237 LSKSLNTTIKNVKSMMYKLS----NMLSAKELAVSGVFGAIALFVAFILGSAILMATGIP 292
Query: 127 VSSAL 131
S L
Sbjct: 293 ASGGL 297
>gi|149177992|ref|ZP_01856589.1| hypothetical protein PM8797T_32275 [Planctomyces maris DSM 8797]
gi|148843185|gb|EDL57551.1| hypothetical protein PM8797T_32275 [Planctomyces maris DSM 8797]
Length = 1249
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 6/58 (10%), Positives = 19/58 (32%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
K + AD+ + R+E+ ++++ + + + + S
Sbjct: 701 AQRQKDLNEQLKALADKQRFAKTDQEREEIERQLKRLRERQRELLRKADEVAQRMDQS 758
>gi|225677950|gb|EEH16234.1| transmembrane and coiled-coil domains 4 [Paracoccidioides
brasiliensis Pb03]
Length = 983
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
+V C L+ + + +V + V + + K + +A++ E K
Sbjct: 328 TVLCDLFLVLIADSTYDARSRRLLERVGESLGVTWSQICRFEKRVVDALEMQEEKGKETW 387
Query: 76 GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT-FLCVSVSSAL 131
+ ++ + K+ Y I + + G L + LS+ + +++
Sbjct: 388 DEAEHMEMRRKQA----LKKRYMIM--GLATVGGGLVIGLSAGLLAPVIGAGLAAGF 438
>gi|312371680|gb|EFR19804.1| hypothetical protein AND_21783 [Anopheles darlingi]
Length = 557
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ + ++ T + + L ++KIE K + T+ + LIS +
Sbjct: 211 DAEHERRRKEQLKKLFDRTTKQVEEEQMLLNELKKIEARKKERERKTQDLQKLISQA 267
>gi|298709434|emb|CBJ31340.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 521
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 25 FYNVINPGDSKSQDNAKVVR----ADRVIPTANTKRRKELREAIQ--KIELNHKAKIGNT 78
+ N + Q R +R A K + + E I+ K+E K +
Sbjct: 7 LDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIEEQIRARKLEQRRKEEEARK 66
Query: 79 KSIDSLISCSGLP 91
+ I +G+
Sbjct: 67 QEEADQIRTAGIS 79
>gi|167624185|ref|YP_001674479.1| hydrogenase (NiFe) small subunit HydA [Shewanella halifaxensis
HAW-EB4]
gi|167354207|gb|ABZ76820.1| hydrogenase (NiFe) small subunit HydA [Shewanella halifaxensis
HAW-EB4]
Length = 378
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
++ + +IE K K +++++ + +G I+++ + S + +L+L L S
Sbjct: 9 QQGLARIEQLRKQKPRHSETLQQKLEQNG--ITRRDFMKWSA---SVTAMLALPLPFSTL 63
Query: 121 TFLCVSVS 128
++
Sbjct: 64 VAEAAELA 71
>gi|317010758|gb|ADU84505.1| hypothetical protein HPSA_02470 [Helicobacter pylori
SouthAfrica7]
Length = 194
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 7 WFLVGLITVSVF-CFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKE------ 59
F+VG ++V L A F + K ++ KR K
Sbjct: 3 PFIVGGAILAVGFGVLAAFFDVETKKEKERQNTLKKDIKNYTHKVQQAKKRHKHEQTLKI 62
Query: 60 -------LREAIQKIELNHKAKIGNTKSIDSLISC 87
++ +++IE + K + +++
Sbjct: 63 ADHCLNIIQRYLEEIERLQQEKKDIPTQLKTVLEQ 97
>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 326
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 3/135 (2%)
Query: 3 DVNSWFLVGLITVSVFCF---LYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKE 59
D L V++ LY + + P + + + A + K+
Sbjct: 2 DTTLLAFAVLGFVAIVLLIEGLYVFWNSRHGPVVKRMDARIRAMSAGGHVSGEQMSILKQ 61
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++ +D + SGLP S + S F + +
Sbjct: 62 RLLSESPTFTRVLMRVPRVHLLDLYLQQSGLPWSVGRFVGYSAASAFGGLLFGMGGMRLP 121
Query: 120 FTFLCVSVSSALVFP 134
A + P
Sbjct: 122 VVLALPVAGGAALLP 136
>gi|328712488|ref|XP_001950480.2| PREDICTED: regulator of chromosome condensation-like [Acyrthosiphon
pisum]
Length = 543
Score = 36.1 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 35 KSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISK 94
+ ++ +RK L E +++ KI + ++D+ I SG+ + K
Sbjct: 115 ARTKRKQESENQPEPTSSKRSKRKSLEEQAIEVKRKKTEKISDKIAVDNRIETSGIMMIK 174
Query: 95 QHYYIGSCVIGF 106
+ + + G
Sbjct: 175 GRDIVIAGLFGL 186
>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
sediminis HAW-EB3]
Length = 325
Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 3/127 (2%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA- 63
N +GLI ++V A+F V +P + + K ++ + LR++
Sbjct: 4 NEIIFLGLIFLAVILLSQALFLPVYSPQRANTALVRKRLKQLSKNSDDSEFETSLLRKSK 63
Query: 64 IQKIEL--NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
+QK+ KI +++ + + + H+++ + V I G+L+ +
Sbjct: 64 LQKLNRFGRALEKIEFIENLSYRLELADYKMMGHHFFLLALVTSIITGLLTWQFTREPII 123
Query: 122 FLCVSVS 128
+ V
Sbjct: 124 TVFVMAV 130
>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 325
Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 6/136 (4%)
Query: 4 VNSWFLVGLITV-SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+N+ + L++V Y + S++ ++ +A+ + + +
Sbjct: 1 MNTLMIGFLLSVFVAIALGVLGAYQWWSTHRSQTARRLSHRLETALLNSASHNKEASILK 60
Query: 63 AI---QKIELNHKAKIGNTKSIDSL-ISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
E + + + SGL S S I G L L
Sbjct: 61 QRVLSDSPEFARLLQRLPRIDMVDRFLLQSGLDWSVGRLLGLSLASAAIVGGLVWLL-HP 119
Query: 119 FFTFLCVSVSSALVFP 134
+ P
Sbjct: 120 LWVAQLSITLMGASLP 135
>gi|312384056|gb|EFR28876.1| hypothetical protein AND_02640 [Anopheles darlingi]
Length = 329
Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF----- 120
+ E K K ++S+++L+ +G P+ + + S + + +
Sbjct: 75 EQEQREKEKKRQSESMNNLL--TGEPVQPEQTELFSFSLAVSIVCIWVLTGHWLLMDAMG 132
Query: 121 TFLCVSVSSALVFP 134
LCV+ + + P
Sbjct: 133 MGLCVAFIAFVRLP 146
>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 321
Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVR----ADRVIPTANTKRRKELREAIQKIELNHKAKIGN 77
YA + SQ + A R P R + + + N
Sbjct: 18 YAGLSVYLQRRREVSQRIQQYAGYQPAAVRKTPFWEILRNRFHE--LFAERNRRPGRPWN 75
Query: 78 TKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV 132
K +D ++ +GLP+ + Y + + + +++ S T L + +
Sbjct: 76 RKKLDLMMIQAGLPLLGKEYVAIAGGLAVLVFLVTAVAGRSLVTGLLGGILTLFG 130
>gi|251788327|ref|YP_003003048.1| hypothetical protein Dd1591_0688 [Dickeya zeae Ech1591]
gi|247536948|gb|ACT05569.1| hypothetical protein Dd1591_0688 [Dickeya zeae Ech1591]
Length = 229
Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPIS 93
K D A+ I + EAI++ K I I
Sbjct: 119 RKEIDRKSKAIAESDIIKNQAIEHAK-EEAIKEFFRAASRKEKQKVPIALRI-------- 169
Query: 94 KQHYYIGSCVIGFICGVLSLTL 115
++I S G I VL
Sbjct: 170 --LFWIWSGFSGIIASVLLFIF 189
>gi|6048269|emb|CAB58126.1| c-ski protein [Oreochromis aureus]
Length = 714
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 595 EFLRVAKKEKLREATEAKRNLRKEIERLRAESEKKMKEANESRIRLKRELEQA 647
>gi|224130856|ref|XP_002328393.1| predicted protein [Populus trichocarpa]
gi|222838108|gb|EEE76473.1| predicted protein [Populus trichocarpa]
Length = 1033
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 23/59 (38%)
Query: 33 DSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ K + ++ + RV +RRK + +++E K + + + GL
Sbjct: 325 EEKERRVRELFKEVRVKDDEFRERRKGVELKGREVEERIKEIGFKDRKVGERLKEVGLK 383
>gi|156406783|ref|XP_001641224.1| predicted protein [Nematostella vectensis]
gi|156228362|gb|EDO49161.1| predicted protein [Nematostella vectensis]
Length = 956
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 22/56 (39%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
+ K Q+ + + + + +R++ + I++ E K + + ++
Sbjct: 432 LVEARRKEQEEKRKLEEQKRKEEEDRRRKEAEEKRIKEEEARLKEERRSKDEEENR 487
>gi|255549916|ref|XP_002516009.1| Myosin-2 heavy chain, non muscle, putative [Ricinus communis]
gi|223544914|gb|EEF46429.1| Myosin-2 heavy chain, non muscle, putative [Ricinus communis]
Length = 691
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 23/59 (38%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
+ ++ +N + A + R +L E I+++ HK ++ + L+
Sbjct: 430 LEKERQRAAENRQEYLAAKEEAETQKGRANQLEEEIKELRQRHKQELQDALMHRELLQQ 488
>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 316
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 13/132 (9%)
Query: 6 SWFLVGLITV-SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI 64
+ F+VGLI V + L+ + + + + + + N
Sbjct: 8 ALFIVGLILVYASVALLFVFVWKGRSGVPMSRRRPDSIQHSSGLTRLTNQTV-------- 59
Query: 65 QKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS---SFFT 121
+ K + + +GL Y + + I + V + +
Sbjct: 60 -GVLNRGLKKRPTSIFSRERLEQAGLNKEPGDYLLMAGAITLVSTVTAFFVGGIGIGILA 118
Query: 122 FLCVSVSSALVF 133
+ V L
Sbjct: 119 LILTPVLLYLGL 130
>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
Length = 325
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI 64
N +GLI ++V A+F V +P + + K ++ + L ++
Sbjct: 4 NEVIFLGLIFLAVILLSQALFLPVYSPQRANTALIRKRLKKLSANAGDTSIEVSLLHKS- 62
Query: 65 QKIEL-----NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
K+E +I +++ + + + H+ I + I +++ S
Sbjct: 63 -KLEKLSNFGRKLERIEFIENLSYRLELADYKMMGHHFLILGVLTSIITAMITWFYISDP 121
Query: 120 FTFLCVSVSSAL 131
F + V V +A
Sbjct: 122 FMTIIVFVITAF 133
>gi|156742166|ref|YP_001432295.1| hypothetical protein Rcas_2194 [Roseiflexus castenholzii DSM 13941]
gi|156233494|gb|ABU58277.1| protein of unknown function DUF820 [Roseiflexus castenholzii DSM
13941]
Length = 258
Score = 35.7 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 7/74 (9%), Positives = 27/74 (36%)
Query: 20 FLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTK 79
+ ++ +++ + A+R A +R + R+ + + +A+ +
Sbjct: 182 LSFVEVQEQLDRERQRAEAEQQRAEAERQRAEAEQQRAEAERQRAEAEQQRAEAERQRAE 241
Query: 80 SIDSLISCSGLPIS 93
+ + + G+
Sbjct: 242 RLAARLRALGIDPD 255
>gi|156376395|ref|XP_001630346.1| predicted protein [Nematostella vectensis]
gi|156217365|gb|EDO38283.1| predicted protein [Nematostella vectensis]
Length = 183
Score = 35.7 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+K + AK+ A + + ++ ++++ +Q++E+ + I+ I
Sbjct: 14 FREERAKQAEQAKIRAAMKQRESKRLRQAQQIQRELQELEVKQAEVEKDGVVIEKAIRSG 73
Query: 89 GLPISKQH 96
L S++
Sbjct: 74 ELSKSEEQ 81
>gi|126325600|ref|XP_001368098.1| PREDICTED: similar to FLJ14503 protein [Monodelphis domestica]
Length = 687
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 5/64 (7%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 27 NVINPGDSKSQDNAKVVRADR---VIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDS 83
+ + ++ + R + A + +++ E +K+E + + +++
Sbjct: 11 QRLAKERRQERERSLAAREQQILEKEKRAKLQYERQIEERWKKLEEQKQREDQKRAAVEE 70
Query: 84 LISC 87
Sbjct: 71 KRKQ 74
>gi|224054372|ref|XP_002298227.1| predicted protein [Populus trichocarpa]
gi|222845485|gb|EEE83032.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
+ ++ +N + A + R +L I+++ +K ++ + + L+
Sbjct: 151 LEKERQRAAENRQEYLAAKEEADTQEGRASQLEAQIKELRQENKEELQDALTHRELLQQ 209
>gi|194016091|ref|ZP_03054706.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Bacillus pumilus ATCC 7061]
gi|194012446|gb|EDW22013.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Bacillus pumilus ATCC 7061]
Length = 627
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRK-ELREAIQ--KIELNHKAKIGNTKSIDSLISCS 88
K + A++ + A KR+K ++ ++ IE +A + +++ I+ +
Sbjct: 528 EQEKEAKRTETKPAEKQVEAAPKKRKKLSYKDQLEWDGIEDRIQALEEKHQQLEASIAEA 587
Query: 89 GLPISKQH 96
G K
Sbjct: 588 GSDFGKIQ 595
>gi|166368673|ref|YP_001660946.1| hypothetical protein MAE_59320 [Microcystis aeruginosa NIES-843]
gi|166091046|dbj|BAG05754.1| hypothetical protein MAE_59320 [Microcystis aeruginosa NIES-843]
Length = 243
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 4/54 (7%), Positives = 22/54 (40%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
Y+ ++ ++++ + +R +R +++ + + ++E +
Sbjct: 182 YSEINQLLEQEKQRAENERQRAENERQRAENERQRAEQVNQQLVEMEAKLQKYR 235
>gi|48734798|gb|AAH72137.1| C-ski-A protein [Xenopus laevis]
Length = 715
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 579 EFLRVAKKEKLREATEAKRNLRKEIERLRAEHEKKMKEANESRLRLKRELEQA 631
>gi|148231133|ref|NP_001080930.1| ski oncogene [Xenopus laevis]
gi|548927|sp|Q02225|SKI_XENLA RecName: Full=Ski oncogene; AltName: Full=Proto-oncogene c-Ski
gi|65101|emb|CAA48642.1| c-ski [Xenopus laevis]
Length = 717
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 581 EFLRVAKKEKLREATEAKRNLRKEIERLRAEHEKKMKEANESRLRLKRELEQA 633
>gi|293347847|ref|XP_001077382.2| PREDICTED: v-ski sarcoma viral oncogene homolog, partial [Rattus
norvegicus]
Length = 714
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 578 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 630
>gi|301614251|ref|XP_002936602.1| PREDICTED: ski oncogene-like isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 715
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 579 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 631
>gi|301614249|ref|XP_002936601.1| PREDICTED: ski oncogene-like isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 717
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 581 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 633
>gi|260827853|ref|XP_002608878.1| hypothetical protein BRAFLDRAFT_129938 [Branchiostoma floridae]
gi|229294232|gb|EEN64888.1| hypothetical protein BRAFLDRAFT_129938 [Branchiostoma floridae]
Length = 612
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 24/59 (40%)
Query: 28 VINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ + + A+ + +RRKEL ++ ++ K K + ++ +I+
Sbjct: 213 RVEVEERMRVELARKLEEKDDQLRELNQRRKELELMLKDLDHREKEKDKRYQELEEMIA 271
>gi|126343291|ref|XP_001379719.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 706
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 560 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 612
>gi|108995797|ref|XP_001086434.1| PREDICTED: ski oncogene [Macaca mulatta]
Length = 970
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 582 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 634
>gi|126352568|ref|NP_001075287.1| ski oncogene [Equus caballus]
gi|68052987|sp|Q9TUG2|SKI_HORSE RecName: Full=Ski oncogene; AltName: Full=Proto-oncogene c-Ski
gi|6277386|dbj|BAA86292.1| SKI [Equus caballus]
Length = 730
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 594 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 646
>gi|149024792|gb|EDL81289.1| similar to Ski protein (predicted) [Rattus norvegicus]
Length = 699
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 563 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 615
>gi|325191235|emb|CCA26022.1| premRNAprocessing protein putative [Albugo laibachii Nc14]
Length = 597
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 42 VVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGS 101
R R ++ RK++ A+++ E K ++ + + +G+ + + + + S
Sbjct: 309 AERKAREEVNMRSQVRKKV--ALKQKEQKEKELRE--LALKARMERAGIRENSRRHSVSS 364
Query: 102 CV 103
Sbjct: 365 IG 366
>gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 321
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 18/148 (12%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKV--VRADRVIPTANTKR-- 56
+ + + G+ +S FC + + + S+ A R+ A +
Sbjct: 5 LTSHSDLLVAGIAAISAFCACMVVSWPYLVRDPLASRLRQVADETEAIRIRERAKLQAGH 64
Query: 57 ----RKELREAIQKIELNHK-AKIGNTKSIDSLISCSGL--PISKQHYYIGSCVIGFICG 109
R E ++ + I A+ ++ + +G + ++ F+
Sbjct: 65 GPSLRTEPKKLFKDIFDRLNLARQAEDGAVVQRLRMAGYRGQGPVVTFLAVRLIMPFVMF 124
Query: 110 VLSLT-------LSSSFFTFLCVSVSSA 130
+++ L F L ++++ A
Sbjct: 125 AVAMFYVFVVLRLDGPFVLKLGIALAVA 152
>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 322
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIE--LNHKAKIGNTKS 80
A+ Q ++ + + I + + +++ + + +S
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLR--ENSLKNLSPLERWLVRFSLFES 79
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ +G+ + + + G G+L ++ V+V+
Sbjct: 80 FKKKLELAGISMGFSRVIFFTFLSGVAVGLLLYLWGQVWYLCAGVAVA 127
>gi|119025740|ref|YP_909585.1| hypothetical protein BAD_0722 [Bifidobacterium adolescentis ATCC
15703]
gi|154487438|ref|ZP_02028845.1| hypothetical protein BIFADO_01290 [Bifidobacterium adolescentis
L2-32]
gi|118765324|dbj|BAF39503.1| probable conserved integral membrane protein with CBS domain
[Bifidobacterium adolescentis ATCC 15703]
gi|154083956|gb|EDN83001.1| hypothetical protein BIFADO_01290 [Bifidobacterium adolescentis
L2-32]
Length = 472
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 9/129 (6%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA 63
+ + + + + V L + + + + ++ +
Sbjct: 1 METTTITMIAILVVIALLLVWLSLSMAATEGAVGRVTRASLNNLILEIQTDTEASQFIR- 59
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVI-GFICGVLSLTLSSSFFTF 122
+ K + I + +G S + I V+ G + ++ + +
Sbjct: 60 ----DKKIKRIHKVQRLIADRYATAG---SCAFFRITCNVLDGVLVAAIASLCDAPLWAG 112
Query: 123 LCVSVSSAL 131
L V AL
Sbjct: 113 LLVGFVFAL 121
>gi|311259696|ref|XP_003128216.1| PREDICTED: LOW QUALITY PROTEIN: desmoplakin-like [Sus scrofa]
Length = 2882
Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSID 82
A F + + + Q + + + + ++ +RK+L E ++ + + K + S+
Sbjct: 1565 ARFQSSLKELQVQKQKAEEELARLKRAASEDSSKRKKLEEELEAMRRSLKEQAVKVTSLT 1624
Query: 83 SLISCSGLPISKQH 96
+ + ISK+
Sbjct: 1625 QQLEQA--SISKKR 1636
>gi|17227420|ref|NP_478471.1| hypothetical protein all8046 [Nostoc sp. PCC 7120]
gi|17134819|dbj|BAB77376.1| all8046 [Nostoc sp. PCC 7120]
Length = 1018
Score = 35.3 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 91 PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSAL 131
P + + + I + + + G+L L + F L + S+
Sbjct: 20 PFTGRQFVIFAGIFCIVFGLLCLIIGLDIFWGLGFAFWSSF 60
>gi|39971663|ref|XP_367222.1| hypothetical protein MGG_07147 [Magnaporthe oryzae 70-15]
gi|145019622|gb|EDK03850.1| hypothetical protein MGG_07147 [Magnaporthe oryzae 70-15]
Length = 766
Score = 35.3 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
+++ A+ + I ++R+EL Q +E K K + + ++ G
Sbjct: 451 AEEFARRQEEAQKIFEEKKRKREELDRQRQDLEQRQKELHEERKKLRAKLAARG 504
>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 335
Score = 35.3 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---------RVIPTANTKRRKELRE 62
L+ ++ F + AI+ V + A R + + RR + +
Sbjct: 22 LVAIAAFAVMLAIYAAVTVRDPMAKRVKALNERREQLKSGIVTANARKRTSIVRRNQTTD 81
Query: 63 AIQK-IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL-TLSSSFF 120
I+ +E + I ++ +G+ ++ + + ++G + G ++L ++ F
Sbjct: 82 QIRGFLESLKVLQDSQLAVIQQKLAQAGI---RKKEWAVAVILGRLVGPIALGLFGAAVF 138
>gi|68067481|sp|Q60698|SKI_MOUSE RecName: Full=Ski oncogene; AltName: Full=Proto-oncogene c-Ski
gi|16904236|gb|AAL30825.1| Ski proto-oncogene [Mus musculus]
Length = 725
Score = 35.3 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 589 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRVRLKRELEQA 641
>gi|113205055|ref|NP_035515.2| ski oncogene [Mus musculus]
gi|123298533|emb|CAM20049.1| Sloan-Kettering viral oncogene homolog [Mus musculus]
gi|148683050|gb|EDL14997.1| Sloan-Kettering viral oncogene homolog [Mus musculus]
Length = 727
Score = 35.3 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 591 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 643
>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 322
Score = 35.3 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIE--LNHKAKIGNTKS 80
A+ Q ++ + + I + + +++ + + +S
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLR--ENSLKNLSPLERWLVRFSLFES 79
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ +G+ + + + G G+L ++ V+V+
Sbjct: 80 FKKKLELAGISMGFSRVIFFTFLSGVAVGLLLYLWGQVWYLCAGVAVA 127
>gi|46329445|gb|AAH68305.1| Ski protein [Mus musculus]
Length = 675
Score = 35.3 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 539 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 591
>gi|123298534|emb|CAM20050.1| Sloan-Kettering viral oncogene homolog [Mus musculus]
Length = 675
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 539 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 591
>gi|301618279|ref|XP_002938549.1| PREDICTED: alpha-2-macroglobulin-like [Xenopus (Silurana)
tropicalis]
Length = 1727
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 29 INPGDSKSQDNAKVVRADRVIPT-----ANTKRRKELRE------AIQKIELNHKAKIGN 77
+ ++ + R K++ L E +++E K K
Sbjct: 61 LQKVRKAEEERLRQEAKGREKERILQEHEQIKKKTNLEELDPDFIMAKQVEQLEKEKKEL 120
Query: 78 TKSID--SLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
+ + + CSG +S Q + GS G + L S T + + V L P+
Sbjct: 121 QERLKNQEKVRCSGGSVSPQEVHNGSPGYGAPTEL--YILESMLATTVILCVVQGLGLPK 178
>gi|326932307|ref|XP_003212261.1| PREDICTED: ski oncogene-like [Meleagris gallopavo]
Length = 750
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 614 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRIRLKRELEQA 666
>gi|224079800|ref|XP_002197076.1| PREDICTED: v-ski sarcoma viral oncogene homolog [Taeniopygia
guttata]
Length = 752
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 616 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRIRLKRELEQA 668
>gi|86129540|ref|NP_001034407.1| ski oncogene [Gallus gallus]
gi|1351069|sp|P49140|SKI_CHICK RecName: Full=Ski oncogene; AltName: Full=Proto-oncogene c-Ski
gi|211681|gb|AAA48730.1| c-ski protein [Gallus gallus]
Length = 750
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 614 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRIRLKRELEQA 666
>gi|167522313|ref|XP_001745494.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775843|gb|EDQ89465.1| predicted protein [Monosiga brevicollis MX1]
Length = 1103
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELR-EAIQKIELNHKAKIGNTKSIDSLISCSGL 90
+K + AK + + E E ++K E K T + + + L
Sbjct: 373 QRAKQEREAKKAEEKAQREAERARLKAEREAERLKKQEEKRKELEQKTAERNEKLRQAEL 432
Query: 91 PISKQH 96
K+
Sbjct: 433 EKVKRK 438
>gi|149628452|ref|XP_001521682.1| PREDICTED: similar to cathepsin L [Ornithorhynchus anatinus]
Length = 270
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 9/95 (9%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
+ S + +++ V + ++ + + K + RR +
Sbjct: 34 SMTSLLRLVTLSLVVAAAPTVLGLPRLDSALDRHWERWKAWHRRDYRENEDGWRRAVWEK 93
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHY 97
++ IE++++ +S ++ G ++ + +
Sbjct: 94 NLKMIEMHNREYSVGKRSFKMEMNHFG-DMTNEEF 127
>gi|87240431|gb|ABD32289.1| tRNA-binding arm; t-snare [Medicago truncatula]
Length = 992
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/59 (13%), Positives = 21/59 (35%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
+ ++ ++ + A + R ++ E I+ I HK ++ L+
Sbjct: 731 LEKERQRAAESRQEYLAAKEEADTQEGRARQFEEEIRDIRQKHKQELQEALIHRELLQQ 789
>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 324
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 6/54 (11%), Positives = 18/54 (33%)
Query: 81 IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
++ + +GLP+ + + + + L+ F + + P
Sbjct: 81 LEHRLMQAGLPLRGSEFLVICTGSALVGMLTLFILARGRPIFAVIGAIIGYLVP 134
>gi|300797856|ref|NP_001179297.1| desmoplakin [Bos taurus]
gi|297489535|ref|XP_002697644.1| PREDICTED: desmoplakin [Bos taurus]
gi|296473943|gb|DAA16058.1| desmoplakin [Bos taurus]
Length = 2889
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 26/66 (39%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSID 82
A F + + Q + + + + ++ +RK+L E ++ + K + S+
Sbjct: 1567 ARFQTSLKELQLQKQKAEEELARLKRAASEDSSKRKKLEEELEGMRRTLKEQAIKVTSLT 1626
Query: 83 SLISCS 88
+ +
Sbjct: 1627 QQLEQA 1632
>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 327
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 43/133 (32%), Gaps = 8/133 (6%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
+ D I +++ +A + S + + +R +
Sbjct: 4 VADPTQLIAPVGIFLAILAV-FAFLASRSASNPSYEERLTQFAG----RRADQQQRTAK- 57
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
E +++I+ +++ + ++ + L ++ +Y+ + + V+ + + +
Sbjct: 58 -EQLREIDKVVARGKRGSETARN-LARADLKLTVTEFYMIKLLAAGVGAVVGAFIGRASW 115
Query: 121 TFLCVSVSSALVF 133
+S
Sbjct: 116 EAQLLSGIVGFAL 128
>gi|257877019|ref|ZP_05656672.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257811185|gb|EEV40005.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 896
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 52 ANTKRRKELREAIQKIELNHKAKIGNTKSID---SLISCS-----GLPISKQHYYIGSCV 103
T R + R ++++E + + + + + G + + V
Sbjct: 370 EQTTRLLQERVQLEELEKRMRHLEEKAQPLQDTAARLEQQHPQLIGRKPVSRPLWPLGIV 429
Query: 104 IGFICGVLSLTLSSSFFTFLCVSVSSALV--FP 134
G + + S + L +++ + P
Sbjct: 430 GGLVAVIGIFLPSPWRWLALGAGIAAIIGSILP 462
>gi|194674123|ref|XP_582529.4| PREDICTED: v-ski sarcoma viral oncogene homolog (avian) [Bos
taurus]
Length = 749
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + +
Sbjct: 613 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANEARLRLKRELEQA 665
>gi|156082581|ref|XP_001608775.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia bovis
T2Bo]
gi|154796024|gb|EDO05207.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia bovis]
Length = 1102
Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 13 ITVSVFCFLYAIFYNVINPG-----DSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
VS L ++ + + G + Q + K + T +R E E++Q +
Sbjct: 947 SIVSCTGVLPVLYRHGFSYGNPFNLEGYHQKDGKTDGQYDIEDTKKARRCHEFLESLQDV 1006
Query: 68 ELNHKAKIGNTKSIDSLISCSG-LPISKQHYYIGSCVIGFICGVLSLTLSS 117
+ + +L+S G L + +I + ++ VL L +
Sbjct: 1007 INQKEEATSQDHPLTNLLSQVGKLQYDIRLPWIFVLTLAWLVAVLYLAFGA 1057
>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 323
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
L V + Y ++ P + Q+ + V A +++ L +
Sbjct: 9 LIFCFLAVVLLLEGGYLAWHAHRGPEAKRIQERLQAVSAGWGDAETGLMKQRLLSNS--P 66
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+I S+D L+ SG+ + H+ + + + L F L
Sbjct: 67 ALERFLLQIPRIHSLDRLLQQSGMSLMVTHFLGYTAMTALGGMACAALLGLPFAVTLLCG 126
Query: 127 VSSALVFPRFF 137
++ V P FF
Sbjct: 127 -ATGSVLPLFF 136
>gi|225455135|ref|XP_002267350.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 978
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 25/59 (42%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
+ ++ +N + A + + R +L E I+++ HK ++ + + L+
Sbjct: 714 LEKERQRAAENRQEYLAAKEEADTHEGRANQLEEEIRELRKKHKQELQDALAHRELLQQ 772
>gi|168004061|ref|XP_001754730.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693834|gb|EDQ80184.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 806
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 33 DSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPI 92
+ + K R +N R KEL I+++E ++ + G+ +
Sbjct: 618 RKERDEARKEARKQNDRAESNESRIKELESRIKELEEELDEANSRVSDLEEQLRKVGVTV 677
Query: 93 SKQH 96
+
Sbjct: 678 EQHK 681
>gi|6678185|ref|NP_033324.1| surfeit locus protein 6 [Mus musculus]
gi|6094376|sp|P70279|SURF6_MOUSE RecName: Full=Surfeit locus protein 6
gi|1514614|emb|CAA63428.1| nuclear protein [Mus musculus]
gi|22902273|gb|AAH37634.1| Surfeit gene 6 [Mus musculus]
gi|74205419|dbj|BAE21025.1| unnamed protein product [Mus musculus]
gi|123210954|emb|CAM23698.1| surfeit gene 6 [Mus musculus]
gi|148676386|gb|EDL08333.1| surfeit gene 6, isoform CRA_a [Mus musculus]
Length = 355
Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK-----IELNHKAKIGNTKSIDSLI 85
++Q K + + +R+ + R+ ++K E + + + +
Sbjct: 290 KEKRRAQRQRKWEKRSEHVVEKMQQRQDKRRQNLRKKKAARAERRLQKAHKKGRVLPQDL 349
Query: 86 SCSGLP 91
+GL
Sbjct: 350 ERAGLS 355
>gi|302144021|emb|CBI23126.3| unnamed protein product [Vitis vinifera]
Length = 931
Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 25/59 (42%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
+ ++ +N + A + + R +L E I+++ HK ++ + + L+
Sbjct: 667 LEKERQRAAENRQEYLAAKEEADTHEGRANQLEEEIRELRKKHKQELQDALAHRELLQQ 725
>gi|194222994|ref|XP_001916548.1| PREDICTED: desmoplakin [Equus caballus]
Length = 2810
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 8/64 (12%), Positives = 27/64 (42%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
F + + + Q + + + + ++ +RK+L E ++ + + K + S+
Sbjct: 1573 FQSSLKELQLQKQKADEELNRLKKTASEDSSKRKKLEEELEGLRRSLKEQAIKITSLTQQ 1632
Query: 85 ISCS 88
+ +
Sbjct: 1633 LEQA 1636
>gi|104547|pir||C32575 C-ski protein FB27 - chicken
Length = 649
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 41 KVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+V + +++ KR RKE+ + E K + + + +
Sbjct: 516 RVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRIRLKRELEQA 565
>gi|313230318|emb|CBY08022.1| unnamed protein product [Oikopleura dioica]
Length = 1039
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+I ++Q + ++ ++ K RK+ + + KA+ ++ +
Sbjct: 286 ELIESRQKEAQQRREEIQREK-----TEKVRKQTEKVEKAQRNQKKAQQRAKNILEEKLK 340
Query: 87 CS 88
+
Sbjct: 341 QA 342
>gi|119576522|gb|EAW56118.1| v-ski sarcoma viral oncogene homolog (avian), isoform CRA_b [Homo
sapiens]
Length = 730
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 594 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 646
>gi|154318930|ref|XP_001558783.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|150857984|gb|EDN33176.1| predicted protein [Botryotinia fuckeliana B05.10]
Length = 1278
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 7/60 (11%), Positives = 24/60 (40%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ + + +Q ++ + I A K ++ A+++ E + K ++ ++
Sbjct: 638 PIDSGEEEITQKRIRIAKRRLKIAAARRKMPEDELRALEEKEAKQRKIAEAKKDLEERVA 697
>gi|45433533|ref|NP_956114.2| eukaryotic translation initiation factor 3 subunit A [Danio rerio]
gi|44890368|gb|AAH66670.1| Eukaryotic translation initiation factor 3, subunit 10 (theta)
[Danio rerio]
Length = 1267
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 5/56 (8%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
++ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNARKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|82237696|sp|Q6PCR7|EIF3A_DANRE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
Short=eIF3a; AltName: Full=Eukaryotic translation
initiation factor 3 subunit 10; AltName:
Full=eIF-3-theta
gi|37589184|gb|AAH59196.1| Eukaryotic translation initiation factor 3, subunit 10 (theta)
[Danio rerio]
Length = 1267
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 5/56 (8%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
++ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNARKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|194207285|ref|XP_001490944.2| PREDICTED: similar to bromodomain adjacent to zinc finger domain,
1A [Equus caballus]
Length = 1601
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ K + + A + RK E +++ E K K K + S + +
Sbjct: 687 QAKQEFRELKAEQHRKEREEAAARIRKRKEEKLKEQEQKMKEKQEKLKEDEQRNSAADMS 746
Query: 92 I 92
+
Sbjct: 747 V 747
>gi|4506967|ref|NP_003027.1| ski oncogene [Homo sapiens]
gi|134517|sp|P12755|SKI_HUMAN RecName: Full=Ski oncogene; AltName: Full=Proto-oncogene c-Ski
gi|36484|emb|CAA33288.1| unnamed protein product [Homo sapiens]
gi|119576521|gb|EAW56117.1| v-ski sarcoma viral oncogene homolog (avian), isoform CRA_a [Homo
sapiens]
gi|162317948|gb|AAI56045.1| V-ski sarcoma viral oncogene homolog (avian) [synthetic construct]
gi|162318762|gb|AAI57083.1| V-ski sarcoma viral oncogene homolog (avian) [synthetic construct]
Length = 728
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 592 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 644
>gi|327283929|ref|XP_003226692.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like [Anolis carolinensis]
Length = 1414
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSKKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 322
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 37/116 (31%), Gaps = 2/116 (1%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNV-INPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
++ F L+ +V A+ + K ++ A + ++ +
Sbjct: 3 QDATFFFILLFFAVVFISQALILPAAGSKAKHKELSERLKESQSKLDEEALSLLQEHYLK 62
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++ + S+ +I SG S + ++ + L +S
Sbjct: 63 SLTPLD-RKLVRFEVFSSLKKMIELSGYDWSLTQTLTVTSILSVCGFFIVLLISQP 117
>gi|332212109|ref|XP_003255164.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
[Nomascus leucogenys]
Length = 1364
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|301759199|ref|XP_002915445.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like [Ailuropoda melanoleuca]
Length = 1352
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|297687479|ref|XP_002821240.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like isoform 4 [Pongo abelii]
Length = 1348
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 525 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 580
>gi|297687477|ref|XP_002821239.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like isoform 3 [Pongo abelii]
Length = 1352
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|297687475|ref|XP_002821238.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like isoform 2 [Pongo abelii]
Length = 1382
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|297687473|ref|XP_002821237.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like isoform 1 [Pongo abelii]
Length = 1392
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|297301944|ref|XP_001102472.2| PREDICTED: eukaryotic translation initiation factor 3 subunit
A-like [Macaca mulatta]
Length = 1231
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 481 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 536
>gi|296221332|ref|XP_002756681.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
isoform 2 [Callithrix jacchus]
Length = 1354
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|296221330|ref|XP_002756680.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
isoform 1 [Callithrix jacchus]
Length = 1364
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|291404897|ref|XP_002718731.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Oryctolagus cuniculus]
Length = 1362
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|281338077|gb|EFB13661.1| hypothetical protein PANDA_003432 [Ailuropoda melanoleuca]
Length = 1337
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 544 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 599
>gi|226699027|sp|P23116|EIF3A_MOUSE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
Short=eIF3a; AltName: Full=Centrosomin; AltName:
Full=Eukaryotic translation initiation factor 3 subunit
10; AltName: Full=eIF-3-theta; AltName: Full=eIF3 p167;
AltName: Full=eIF3 p180; AltName: Full=eIF3 p185;
AltName: Full=p162
Length = 1344
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|194380132|dbj|BAG63833.1| unnamed protein product [Homo sapiens]
Length = 1348
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 525 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 580
>gi|194205615|ref|XP_001496512.2| PREDICTED: similar to LOC506564 protein [Equus caballus]
Length = 1418
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 628 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 683
>gi|194042126|ref|XP_001928377.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
[Sus scrofa]
Length = 1376
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|261337190|ref|NP_001040552.2| eukaryotic translation initiation factor 3 subunit A [Rattus
norvegicus]
gi|229488252|sp|Q1JU68|EIF3A_RAT RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
Short=eIF3a; AltName: Full=Eukaryotic translation
initiation factor 3 subunit 10; AltName:
Full=eIF-3-theta
Length = 1354
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|149634646|ref|XP_001514639.1| PREDICTED: similar to p167 [Ornithorhynchus anatinus]
Length = 1362
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 581 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 636
>gi|149040541|gb|EDL94579.1| eukaryotic translation initiation factor 3, subunit 10 (theta)
[Rattus norvegicus]
Length = 1354
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|146219837|ref|NP_034253.3| eukaryotic translation initiation factor 3 subunit A [Mus musculus]
Length = 1344
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|116283747|gb|AAH33769.1| EIF3A protein [Homo sapiens]
Length = 634
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|114633007|ref|XP_001153575.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
isoform 1 [Pan troglodytes]
Length = 1382
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|114633009|ref|XP_521618.2| PREDICTED: eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa isoform 2 [Pan troglodytes]
Length = 1352
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|95102034|dbj|BAE94261.1| ZH12 [Rattus norvegicus]
Length = 1244
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 449 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 504
>gi|89365957|gb|AAI14430.1| Eukaryotic translation initiation factor 3, subunit A [Homo
sapiens]
Length = 1382
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|40675359|gb|AAH64926.1| EIF3A protein [Homo sapiens]
Length = 636
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|78070727|gb|AAI07777.1| EIF3A protein [Homo sapiens]
Length = 640
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|329663173|ref|NP_001193243.1| eukaryotic translation initiation factor 3 subunit A [Bos taurus]
gi|297491022|ref|XP_002698584.1| PREDICTED: eukaryotic translation initiation factor 3, subunit A
[Bos taurus]
gi|296472593|gb|DAA14708.1| eukaryotic translation initiation factor 3, subunit A [Bos taurus]
Length = 1376
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|73998665|ref|XP_852131.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 10 (theta) isoform 2 [Canis familiaris]
Length = 1350
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|73998667|ref|XP_544044.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 10 (theta) isoform 1 [Canis familiaris]
Length = 1291
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|74203133|dbj|BAE26252.1| unnamed protein product [Mus musculus]
Length = 737
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|74188812|dbj|BAE39186.1| unnamed protein product [Mus musculus]
Length = 727
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|40788877|dbj|BAA09488.2| KIAA0139 [Homo sapiens]
Length = 1388
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 565 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 620
>gi|1205976|gb|AAA90910.1| p162 protein [Mus musculus]
Length = 1344
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|4503509|ref|NP_003741.1| eukaryotic translation initiation factor 3 subunit A [Homo sapiens]
gi|6685537|sp|Q14152|EIF3A_HUMAN RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
Short=eIF3a; AltName: Full=Eukaryotic translation
initiation factor 3 subunit 10; AltName:
Full=eIF-3-theta; AltName: Full=eIF3 p167; AltName:
Full=eIF3 p180; AltName: Full=eIF3 p185
gi|1808985|gb|AAB41584.1| p167 [Homo sapiens]
gi|2501783|gb|AAB80695.1| translation initiation factor 3 large subunit [Homo sapiens]
gi|55958708|emb|CAI14127.1| eukaryotic translation initiation factor 3, subunit 10 theta,
150/170kDa [Homo sapiens]
gi|119569793|gb|EAW49408.1| eukaryotic translation initiation factor 3, subunit 10 theta,
150/170kDa [Homo sapiens]
gi|168274396|dbj|BAG09618.1| eukaryotic translation initiation factor 3 subunit 10 [synthetic
construct]
Length = 1382
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|326924051|ref|XP_003208246.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation
factor 3 subunit A-like [Meleagris gallopavo]
Length = 1359
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 551 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 606
>gi|229094912|ref|ZP_04225916.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock3-29]
gi|229100997|ref|ZP_04231793.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock3-28]
gi|229113866|ref|ZP_04243300.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock1-3]
gi|228669600|gb|EEL25008.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock1-3]
gi|228682424|gb|EEL36505.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock3-28]
gi|228688518|gb|EEL42392.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock3-29]
Length = 268
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
S+ + + + + + + K V +R L++A+++IE +K K
Sbjct: 8 SIGALILSFL-LIFSAACTSVEKKEKSVAKERKTVELTISAAASLQDALKEIEKQYKEKK 66
Query: 76 GN 77
N
Sbjct: 67 PN 68
>gi|74146265|dbj|BAE28908.1| unnamed protein product [Mus musculus]
Length = 677
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|297484184|ref|XP_002694226.1| PREDICTED: v-ski sarcoma viral oncogene homolog (avian) [Bos
taurus]
gi|296479130|gb|DAA21245.1| v-ski sarcoma viral oncogene homolog [Bos taurus]
Length = 801
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + +
Sbjct: 665 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANEARLRLKRELEQA 717
>gi|293359710|ref|XP_233731.5| PREDICTED: hypothetical protein LOC313757 [Rattus norvegicus]
Length = 454
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 318 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 370
>gi|32449796|gb|AAH54342.1| EIF3A protein [Homo sapiens]
Length = 812
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|62543515|ref|NP_001015014.1| surfeit locus protein 6 [Rattus norvegicus]
gi|60688214|gb|AAH91270.1| Surfeit 6 [Rattus norvegicus]
Length = 354
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK-----IELNHKAKIGNTKSIDSLI 85
++Q K + + +R+ + R+ ++K E + + + +
Sbjct: 289 KEKRRAQRQRKWEKRSEHVVEKMQQRQDKRRQNLRKKKAARAERRLQKARKKGRVLPQDL 348
Query: 86 SCSGLP 91
+GL
Sbjct: 349 ERAGLS 354
>gi|37520861|ref|NP_924238.1| hypothetical protein glr1292 [Gloeobacter violaceus PCC 7421]
gi|35211856|dbj|BAC89233.1| glr1292 [Gloeobacter violaceus PCC 7421]
Length = 266
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 21/54 (38%)
Query: 40 AKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPIS 93
A+ +R +R ++ R+ ++ E + T+++ + G+
Sbjct: 211 AERAEQERQRAEQERQRAEQERQRAERAEQEVAQERRRTEALAERLRQLGIDPD 264
>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 325
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
F + + + A +Y P +R R R ++ E +++
Sbjct: 6 FFLIVGVLFSMALYAAGYYVWSVPEQEAEDRLNSRLRELRAHTRT---RSEKAPELLRRT 62
Query: 68 ELNHKAKIGNTKS-------IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
A +G+ + + LI + L + S ++ ++ + FF
Sbjct: 63 HRGSFAFLGDLVTWVGVLRRLQDLIEQANLKYRAADVFGVSVMLAVGTLLVLTLFGAMFF 122
Query: 121 TFLCVSVSSAL 131
+ ++
Sbjct: 123 LRILFAILVGF 133
>gi|224052940|ref|XP_002187874.1| PREDICTED: similar to EIF6 protein [Taeniopygia guttata]
Length = 1480
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 665 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 720
>gi|154757413|gb|AAI51766.1| EIF6 protein [Bos taurus]
Length = 828
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|322495060|emb|CBZ30363.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 2269
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 2/60 (3%), Positives = 20/60 (33%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
++ ++ + + D R + + ++ + + ++ + + + +
Sbjct: 425 LDKSAAELKRQVAEAQKDHDTLNTEVARLRSIVSKLKDLAEKQEKELESNRVQKQRVEQA 484
>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
Length = 325
Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
L+ + V F +Y + P + + + + A + KE +
Sbjct: 9 IVLLFVAVVLAFEGVYQWWNARHGPAARRIEGRIRAMSAGGQVQKERLSILKERMLNDAR 68
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
++ + +D LI SGL S S F + +T V+
Sbjct: 69 PFDRLLMRVPRMRMLDLLIQQSGLTWSVAKLACISLATPFAAFIALSFAPLPLWTSAAVA 128
Query: 127 VSSA 130
V++A
Sbjct: 129 VTTA 132
>gi|327282342|ref|XP_003225902.1| PREDICTED: coiled-coil domain-containing protein 114-like [Anolis
carolinensis]
Length = 567
Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE----AIQKIELNHKAKIGNTKSI 81
+N +N +++ + + ++ R KR +E +++IE + +
Sbjct: 434 FNYVNEQNNQKELLQEQIKQLRHKIEEVKKREQEKEAERCLQLKQIEARQEKAAKKANYL 493
Query: 82 DSLISCSGLPIS 93
+S + +
Sbjct: 494 ESKLKSASKIWE 505
>gi|74216853|dbj|BAE26550.1| unnamed protein product [Mus musculus]
Length = 807
Score = 35.0 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 559 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 614
>gi|126333921|ref|XP_001367224.1| PREDICTED: similar to porcine cathepsin L [Monodelphis domestica]
Length = 460
Score = 34.6 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Query: 15 VSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAK 74
++ C A + K ++ RR + ++ IE +++
Sbjct: 132 LASLCLGLAAAIPPFDRALDSQWHQWKAQHGKSYAANEDSWRRATWEKNLKMIERHNQEY 191
Query: 75 IGNTKSIDSLISCSGLPISKQHY 97
S ++ G +S + +
Sbjct: 192 SAGKHSFQLRMNKFG-DMSTEEF 213
>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 316
Score = 34.6 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 27/87 (31%)
Query: 42 VVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGS 101
+ R A + ++ A + + + +GL I++ + +
Sbjct: 36 ALSRRRPFGGAERSPLTKFTDSTVGAVERVLAGGNKSPGERATLDQAGLKIARTDFIVLV 95
Query: 102 CVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ G + L L F L ++
Sbjct: 96 GATAVVAGFVGLILQGPVFAVLFAGLT 122
>gi|126333932|ref|XP_001367502.1| PREDICTED: similar to cathepsin L [Monodelphis domestica]
Length = 414
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Query: 15 VSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAK 74
++ C A + K ++ RR + ++ IE +++
Sbjct: 88 LASLCLGLAAAIPPFDRALDSQWHQWKAQHGKSYEANEDSLRRATWEKNLKMIERHNQEY 147
Query: 75 IGNTKSIDSLISCSGLPISKQHY 97
S ++ G +S + +
Sbjct: 148 SAGKHSFQLRMNKFG-DMSTEEF 169
>gi|50510383|dbj|BAD32177.1| mKIAA0139 protein [Mus musculus]
Length = 857
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 565 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 620
>gi|326665466|ref|XP_001345953.3| PREDICTED: GTPase IMAP family member 8-like [Danio rerio]
Length = 627
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAI----QKIELNHKAKIGNTKSIDSLISC 87
K++ A+ ++A+R+ +R K+ +E I + E + +I K + I
Sbjct: 503 ERIKAEMEAENLKAERLSEEEQRRREKQRQEEIERVKKNTEERVRKEIKAKKETEERIRA 562
>gi|20071503|gb|AAH26514.1| Surf6 protein [Mus musculus]
Length = 180
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK-----IELNHKAKIGNTKSIDSLI 85
++Q K + + +R+ + R+ ++K E + + + +
Sbjct: 115 KEKRRAQRQRKWEKRSEHVVEKMQQRQDKRRQNLRKKKAARAERRLQKAHKKGRVLPQDL 174
Query: 86 SCSGLP 91
+GL
Sbjct: 175 ERAGLS 180
>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 329
Score = 34.6 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 30 NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
+P + + + + A ++ + + ++ + +D I SG
Sbjct: 37 SPEAKRLERRLRALSAADDNSNPTKLVKERVLSDMPRM-QRVLQTMPRAHQLDRFIVQSG 95
Query: 90 LPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
L + +GS ++ + + ++ L + S+
Sbjct: 96 LDWTVSGLLLGSAILFALGMLTTMMLRQPMELGVLSSLVLG 136
>gi|118093099|ref|XP_421787.2| PREDICTED: similar to p167 [Gallus gallus]
Length = 1505
Score = 34.6 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 690 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 745
>gi|332807464|ref|XP_003307825.1| PREDICTED: ski oncogene-like [Pan troglodytes]
Length = 475
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 339 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 391
>gi|218675656|gb|AAI69257.2| eukaryotic translation initiation factor 3, subunit 10 (theta)
[synthetic construct]
Length = 483
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKE--LREAIQKIELNHKAKIGNTKSIDSLISC 87
S+ + + A R +R + ++ +++E K+ + +
Sbjct: 70 KNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQ 125
>gi|172036710|ref|YP_001803211.1| hypothetical protein cce_1795 [Cyanothece sp. ATCC 51142]
gi|171698164|gb|ACB51145.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
Length = 1043
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 77 NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
N I+S + + L S ++ S + G + L ++ L +S +
Sbjct: 29 NEPPIES-LEDAALVFSGPQFFT-SLIAGVVLAFAFQLLLTNLGVALGISFAGG 80
>gi|213159266|ref|YP_002321248.1| gp55 [Caviid herpesvirus 2]
gi|6136253|sp|Q69024|GB_GPCMV RecName: Full=Envelope glycoprotein B; Short=gB; Flags: Precursor
gi|212989352|gb|AAA43832.2| GP55 [Caviid herpesvirus 2]
gi|324039501|dbj|BAJ78523.1| GP55 [Caviid herpesvirus 2]
gi|1581047|prf||2116347A glycoprotein B
Length = 901
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 30 NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
+ G + VR R I + K+R+E+ ++ + N ++ I + G
Sbjct: 829 SAGAGADFNEEDAVRMLRAIKRLDDKKRQEIEKSSKDSASNKNSETRRRPGIMDRLRRRG 888
>gi|302504589|ref|XP_003014253.1| hypothetical protein ARB_07558 [Arthroderma benhamiae CBS 112371]
gi|291177821|gb|EFE33613.1| hypothetical protein ARB_07558 [Arthroderma benhamiae CBS 112371]
Length = 622
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 13 ITVSVFCFLYAIFY-NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
V V C + + + + S ++ +R P +R+K ++ + E
Sbjct: 25 AVVEVSCLAFFLRWRSRTVEDKETSSRVDSDLKQERQRPQTARQRKKRIKTRTGETEKKR 84
Query: 72 K 72
K
Sbjct: 85 K 85
>gi|326426627|gb|EGD72197.1| hypothetical protein PTSG_00219 [Salpingoeca sp. ATCC 50818]
Length = 2117
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
+ + + + + A+ P +RRK RE ++ + + K +SI + I+ +
Sbjct: 516 AEREHKAEKQRLLAEGQNPEEVFRRRKLERERAKQQQRAQREKEKQEQSIAARIAQE-MS 574
Query: 92 ISKQ 95
+
Sbjct: 575 WKRS 578
>gi|226229284|ref|YP_002763390.1| putative chaperone ClpB [Gemmatimonas aurantiaca T-27]
gi|226092475|dbj|BAH40920.1| putative chaperone ClpB [Gemmatimonas aurantiaca T-27]
Length = 887
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELN-HKAKIGNTKSIDSL 84
+ D R +RR ++ + ++E K K +K ++
Sbjct: 453 LALQDRVLNREQTAGADHRERLAGIAERRTQVEAQLAELEGRWLKEKDTVSKILEVR 509
>gi|171692283|ref|XP_001911066.1| hypothetical protein [Podospora anserina S mat+]
gi|170946090|emb|CAP72891.1| unnamed protein product [Podospora anserina S mat+]
Length = 1236
Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 14 TVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
+V + A + D + + + A++ N +R + + +++ E N
Sbjct: 324 ATTVALAMEAGLVEIAKKLDDRVSKMTQQLDAEKKRKGKNRERLAVIEKNLKEAEENQ 381
>gi|21410839|gb|AAH30841.1| Ski protein [Mus musculus]
Length = 324
Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 188 EFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEANESRVRLKRELEQA 240
>gi|71657425|ref|XP_817228.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882406|gb|EAN95377.1| hypothetical protein Tc00.1047053510759.50 [Trypanosoma cruzi]
Length = 354
Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 5/53 (9%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
Q + + A + R L+ +++++ K + ++ + +
Sbjct: 108 RQRRSSLANAANEK---RERERAGLQARLRQLQELQDEKRKKNEELELRLRRA 157
>gi|297666674|ref|XP_002811641.1| PREDICTED: LOW QUALITY PROTEIN: ski oncogene-like [Pongo abelii]
Length = 483
Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 38 DNAKVVRADRVIPTANTKR--RKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ +V + +++ KR RKE+ + E K + + + +
Sbjct: 347 EFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKRELEQA 399
>gi|115738584|ref|XP_001188871.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 165
Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 14 TVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKA 73
++S + A+ I+ +++ K+ D V + +RRK++ E ++I+ +
Sbjct: 71 SISASGKVRAVNEKTISLHGRTTRELRKITHIDNVAAAESEERRKQIEERNKEIKERQRQ 130
>gi|218781460|ref|YP_002432778.1| RNA binding metal dependent phosphohydrolase [Desulfatibacillum
alkenivorans AK-01]
gi|218762844|gb|ACL05310.1| RNA binding metal dependent phosphohydrolase [Desulfatibacillum
alkenivorans AK-01]
Length = 524
Score = 34.2 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQD-------NAKVVRADRVIPTANTKRRKEL 60
LV L V+V +YA+ + A+ + A + + +
Sbjct: 10 LLVALGGVAVGIIVYALIRKKAAADKLGRAKAKSEQILEEARIAAENTLKAAQVEAKDVI 69
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISC 87
+A E K K +++ +
Sbjct: 70 LQAKADFEAEAKEARKEIKQLEARLVQ 96
>gi|307110529|gb|EFN58765.1| hypothetical protein CHLNCDRAFT_29762 [Chlorella variabilis]
Length = 475
Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGL 90
++ + V+ ++ R + L E QK E + K N S + +
Sbjct: 371 GEITRVVREPRDVQKEKQAAAQEANRAR-LEEQRQKNEEKKRMKGKNKPSRRQRKKQANI 429
>gi|294632707|ref|ZP_06711266.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14]
gi|292830488|gb|EFF88838.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14]
Length = 306
Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 5/53 (9%), Positives = 17/53 (32%)
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ + +A + I L + ++I S + + ++
Sbjct: 133 ELRIRSQAAEEVKPPKEVRIRRVWLRWAIVLFFIASSAVAAVFLLIPSERGKP 185
>gi|315081212|gb|EFT53188.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
Length = 184
Score = 34.2 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 15 VSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAK 74
+ + D K+ K +R R A RRK+ + + K +
Sbjct: 103 IDALKLAVEVAVARAEKADRKAHKAEKALRKLR-RAGAGKSRRKKAKATLNKRRAKAEKA 161
Query: 75 IGNTKSIDSLISCSGLPISKQHY 97
+ + + I + +
Sbjct: 162 DRKVRKARRRLDKAEHSIDNRQF 184
>gi|116203803|ref|XP_001227712.1| hypothetical protein CHGG_09785 [Chaetomium globosum CBS 148.51]
gi|88175913|gb|EAQ83381.1| hypothetical protein CHGG_09785 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 34.2 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
PG +K+ + A++ +RRK LR AI+K + + + +
Sbjct: 552 PGLAKAGQESCPRSAEQAEEARQAERRKRLRLAIEKGRERQRQRDKEKPPQKAR-RQA 608
>gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1]
gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1]
Length = 895
Score = 34.2 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 23/71 (32%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIG 76
+ ++ + A R +R +++ E +Q + N A
Sbjct: 17 AMALGWLAPAPLLVGQTPTETKIRLMADALRARDAGELERARKIAEELQVLLPNDPAARR 76
Query: 77 NTKSIDSLISC 87
+ ID+ I+
Sbjct: 77 LLEEIDARIAA 87
>gi|221485496|gb|EEE23777.1| hypothetical protein TGGT1_027630 [Toxoplasma gondii GT1]
Length = 347
Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 35 KSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS------ 88
++ A R P +RR E+ ++ E + + + L + +
Sbjct: 275 RTGKGQTAPGAQRKSPAKENRRRTLGEESFREREKEMQKARDHQHRLRLLTAEAKTLRPW 334
Query: 89 --GLPISKQH 96
G+ SK
Sbjct: 335 KEGITWSKTQ 344
>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 327
Score = 34.2 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 24/147 (16%)
Query: 12 LITVSVFCFLYAIF---YNVINPGD--SKSQDNAKVVRADRVIPTAN---TKRRKELREA 63
LI V V + + P D K Q + DR R ++L +
Sbjct: 21 LIVVGVLGMFMILVTIPILLNQPEDPLKKLQRANSSQKRDRKNKKEQLRQASRNEQLEKF 80
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGL--PISKQHYYIGSCVIGFICGVLSLTL------ 115
+E + + ++ + +G + + ++ +G I V+ + L
Sbjct: 81 ASFLEPKDEQEYS---AMQLKLRQAGYVSKDAVRFFHFAQFSLGIIGIVIGVLLVTVFSN 137
Query: 116 -----SSSFFTFLCVSVSSALVFPRFF 137
+ V + P+++
Sbjct: 138 GQEFSGQQVLIRVLVPGAIGYYLPKYW 164
>gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1]
gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1]
Length = 894
Score = 34.2 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL--NHKAKIGNTKSIDSLIS 86
+ ++ K R K+R+++ I+++E KI S I
Sbjct: 586 ATKREKEELLKRAGEIRDRVAPELKKREQVEARIRELEKSARELEKIKGALSEKERIR 643
>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 325
Score = 34.2 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 2/129 (1%)
Query: 1 MFDVNSWFLVGLITVSVFCF--LYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRK 58
M ++ F + L V C +Y + N P + + + A I T K
Sbjct: 1 MNEIFYAFAILLFAAVVLCIEGVYQWWNNYHGPEAKRVDARIRALSAGGHIGTEQLSILK 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
+ + + +ID + SG S + + G + L
Sbjct: 61 KRLLSESPQFQRWLMSLPRVSTIDRWLEQSGSAWSVAQLLGYTILTGAGVLAVGALLPVP 120
Query: 119 FFTFLCVSV 127
F ++
Sbjct: 121 FGIVTACAL 129
>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 321
Score = 34.2 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 15 VSVFCFLYAIFYNVINPGDSKS---QDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
++VFC +A++ V S + + + D+ R E+ I ++
Sbjct: 11 LAVFCLCFAVYLGVSTVKSSPKYELKRRLQRLARDKSAQGMPEDLRSEIIREIPPLD-RI 69
Query: 72 KAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICG 109
AK+ T+ +D + SGL I+ + I + +
Sbjct: 70 LAKLPLTRDLDKKLDYSGLKITASRFLIIAASATVVAF 107
>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 325
Score = 34.2 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 5/130 (3%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL--REAIQK 66
++ + Y N + + K R + + +
Sbjct: 7 AFVILLFVAVVLTFEGLYQWWNARHGVAAKRIEARIRAMSAGGQVQKERLSILKERMLNE 66
Query: 67 IE--LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLC 124
+ + S+D L+ SG+ S S + + V + F +
Sbjct: 67 AKPFDRLLMAMPRVHSLDLLLQQSGMSWSVAKLVGMSLALPPLALVALTFTTLPFPVAVL 126
Query: 125 VSVSSALVFP 134
+++ + + P
Sbjct: 127 IALPTGV-LP 135
>gi|121701667|ref|XP_001269098.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
gi|119397241|gb|EAW07672.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
Length = 407
Score = 34.2 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAI---QKIELNHKAKIGNTKSIDSLISCS 88
+ Q K + + A +RRK L + + + E AK +
Sbjct: 212 TKKQRQQRQKNEARKQQVQEAEAERRKLLEKQLHMARDAERREAAKSKPAAPQTNAWQTK 271
Query: 89 GLPISK 94
G+ +
Sbjct: 272 GVSPTT 277
>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 325
Score = 34.2 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREA 63
+ + ++ + LY + + P + +V+ A + KE +
Sbjct: 8 FATLIFIAVVLLVEG--LYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLS 65
Query: 64 IQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
+ + ++D L+ SGL S + + I ++
Sbjct: 66 ETPVMQRILLGVPRVGTLDRLLQQSGLSWSVGEF----LGMALIAFLVVFFAG 114
>gi|229074252|ref|ZP_04207297.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock4-18]
gi|228708885|gb|EEL61013.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus Rock4-18]
Length = 268
Score = 33.8 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 16 SVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKI 75
S+ + + S + V + + + + L++A+++IE +K K
Sbjct: 8 SIGALILSFLLIFSAACTSGEKKEKSVAKEGKTVELTISA-AASLQDALKEIEKQYKEKK 66
Query: 76 GN 77
N
Sbjct: 67 PN 68
>gi|123469906|ref|XP_001318162.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
gi|121900914|gb|EAY05939.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
Length = 5296
Score = 33.8 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 6/51 (11%), Positives = 21/51 (41%)
Query: 37 QDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
++ + ++ +A +++ E++ + +IE K + I +
Sbjct: 3451 EEIKQKLQQTEQEKSALEQQKNEIQNKLNEIEQQMKDSEKEKEDIKQKLQQ 3501
>gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR]
gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR]
Length = 290
Score = 33.8 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+G I+ + + I VL+L + V + PRF
Sbjct: 51 AGWNITTKEFLAIVLFAIGIGLVLALIFKNPLIIVAGV--VAGYYLPRF 97
>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 285
Score = 33.8 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 52 ANTKRRKELREAIQKIEL-NHKAKIGNTKSIDSL----ISCSGLPISKQHYYIGSCVIGF 106
N R + ++ E G+ + ++ + SGL IS + + G
Sbjct: 7 TNADRPVDFSSILKPREEFAQPQASGSGERLNRWFDQLMLQSGLGISPGIVLMLCLLGGI 66
Query: 107 ICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
G L +F T +V + P FF
Sbjct: 67 TVGGFIFVLQENFLTTALAAVV-GFLLPVFF 96
>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 286
Score = 33.8 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 68 ELNHKAKIGNTKSIDSLISCSGL-PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
E K L++ +G+ ++ + + GF+ VL +S++ +
Sbjct: 25 EEKAKTDGRLVARSRDLLARAGVEGVTPGAFIGACLITGFVAFVLMFLVSAALPVGVVFG 84
Query: 127 VSSALVFP 134
+ + P
Sbjct: 85 LMAG-GVP 91
>gi|126322397|ref|XP_001377978.1| PREDICTED: similar to desmoplakin [Monodelphis domestica]
Length = 2883
Score = 33.8 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQ 95
Q + + + +RK+L + ++ + + K + ++ + + I+K+
Sbjct: 1587 KQKVEDELNRLKKTASDECSKRKKLEDELESMRRSLKEQAIKITNLTQQLEQA--SITKK 1644
Query: 96 H 96
Sbjct: 1645 R 1645
>gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
16294]
gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
16294]
Length = 311
Score = 33.8 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 1 MFDVNS-WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKE 59
M + L+ +IT S Y ++ K + + + + ++
Sbjct: 1 MTALQIDILLIFIITFSATALGYIVYVEY---------QRTKHINYIKHVISLVDADEED 51
Query: 60 LREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ +Q + K + N I +L+ +GL S YI + + C ++ +
Sbjct: 52 I---LQDKHMQSKNTLKNQ--IQALMIQAGLRFSP---YIFALIFLAFCFLIGSLFTLFL 103
Query: 120 FTFLCVSVSSALV 132
+ +
Sbjct: 104 LHWSGYFIGIPFG 116
>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 327
Score = 33.8 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 11/131 (8%), Positives = 42/131 (32%), Gaps = 8/131 (6%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
D+ + I V + +A+ S + + T +R ++
Sbjct: 6 DLTRFIAPAAIFVVILAV-FALLARRSAGNASYEERLTQFAG----RRTDQLQR--SAKD 58
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTF 122
+++I+ +++ + ++ + L ++ +Y + + + + + +
Sbjct: 59 QLREIDKVVARGKRGSETQRN-LARADLKLTVTEFYAIKLLAAAVGAAVGAFIGRASWEA 117
Query: 123 LCVSVSSALVF 133
+S
Sbjct: 118 QLLSGIVGFAL 128
>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 325
Score = 33.8 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 32/105 (30%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
L + V Y + + + + + A + K+ K
Sbjct: 10 ILTFVAVVLAIEGAYQWWSARHGTAARRIESRIRAMSAGGQVQQERLSILKQRMLDESKP 69
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLS 112
++ KSID L+ SGL S S ++ + ++
Sbjct: 70 FDRLLLRMPRVKSIDLLLQQSGLDWSVAKLIALSVMLPPLAWLVL 114
>gi|314919339|gb|EFS83170.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
gi|314920752|gb|EFS84583.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
gi|327454924|gb|EGF01579.1| hypothetical protein HMPREF9581_01112 [Propionibacterium acnes
HL087PA3]
gi|328755242|gb|EGF68858.1| hypothetical protein HMPREF9579_01269 [Propionibacterium acnes
HL087PA1]
Length = 184
Score = 33.8 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGL 90
D K+ K +R R RRK+ + + K + + + +
Sbjct: 119 KADRKAHKAEKALRKLRHAGAG-KSRRKKAKATLNKRRAKAEKADRKVRKARRRLDKAEH 177
Query: 91 PISKQHY 97
I + +
Sbjct: 178 SIDNRQF 184
>gi|271965109|ref|YP_003339305.1| hypothetical protein Sros_3631 [Streptosporangium roseum DSM 43021]
gi|270508284|gb|ACZ86562.1| hypothetical protein Sros_3631 [Streptosporangium roseum DSM 43021]
Length = 336
Score = 33.8 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSID 82
A+ +++ D+K Q AKV + R T +R LR +++K++ K I
Sbjct: 131 ALTQQIVSEQDAKLQGFAKVRDSHRGAQTMAEQRAAALRASLKKLDGQKKRAERLIGQIK 190
Query: 83 SLISC 87
I
Sbjct: 191 DRIDQ 195
>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 284
Score = 33.8 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 74 KIGNTKSIDSLISCSGL-PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV 132
K I + +G+ I+ + S + G + GVL L+ ++F + S +
Sbjct: 29 KTEREPKIAVTLRKAGMHTITPSAFTGVSILSGVLAGVLLFALT-GLWSFAFLGTGSGFI 87
Query: 133 FPR 135
PR
Sbjct: 88 MPR 90
>gi|149278155|ref|ZP_01884293.1| penicillin-binding protein [Pedobacter sp. BAL39]
gi|149230921|gb|EDM36302.1| penicillin-binding protein [Pedobacter sp. BAL39]
Length = 723
Score = 33.8 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 5/66 (7%), Positives = 18/66 (27%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
I D ++ + + + ++ ++I K + + + +
Sbjct: 658 PAIETQDQSKSLFDRLFGTKKDTVSRQPAMADTVEKSRKEIRQERKEQRQKERDLKKQLE 717
Query: 87 CSGLPI 92
G
Sbjct: 718 EQGKKP 723
>gi|320592739|gb|EFX05160.1| bzip transcription factor [Grosmannia clavigera kw1407]
Length = 561
Score = 33.8 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRK----ELREAIQKIELNHKAKIGNTKSIDSLISC 87
D K Q + V +R ++ +R++ L E +++E + ++
Sbjct: 107 EDEKEQRRVERVLRNRRAAQSSRERKRLEVEALEERNKELEALLLNAQKENLMLYQRLTQ 166
Query: 88 S 88
+
Sbjct: 167 A 167
>gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 319
Score = 33.8 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQ-----------DNAKVVRADRVI 49
MFD + +V ++SVF +YA+ + + + + ++ R +
Sbjct: 1 MFDSVTIAVVVATSISVFSLIYAVIIPSLGSDELEKRIKSVSIEREELRKQQLARLGKPS 60
Query: 50 PTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGL--PISKQHYYIGSCVIGFI 107
T LR + +E + I K + + +G + I V+ I
Sbjct: 61 SGLRTHDNMSLR---KFVEKFNLKAILVDKPMVDKLRAAGFRSEYALNILLIIRLVLPII 117
Query: 108 CGVLSLT 114
V+ +
Sbjct: 118 TLVIGII 124
>gi|23009311|ref|ZP_00050407.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 195
Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 11/140 (7%), Positives = 39/140 (27%), Gaps = 16/140 (11%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQ------DNAKVVRADRVIPTANTKRRKELR 61
L ++ ++ + +I + + ++ + +R R E +
Sbjct: 15 MAAVLTGIAAAATVFTLIQPLIETDQLGKRMKLVSDEREQIRQRERERLNNRVTLRTEPK 74
Query: 62 EAIQKIELNHKAKI-GNTKSIDSLISCSGL----PISKQHYY-----IGSCVIGFICGVL 111
++++ T + ++ +G + ++ I V +
Sbjct: 75 AYMKRVVERFNLSRWLGTDTAKIKLTMAGYRGAGAETAFLFFRLVVPIVLTVGALFYLFV 134
Query: 112 SLTLSSSFFTFLCVSVSSAL 131
L +S+ +
Sbjct: 135 LEVLDQPPLIRFGLSLFAGF 154
>gi|301770687|ref|XP_002920762.1| PREDICTED: surfeit locus protein 6-like [Ailuropoda melanoleuca]
Length = 354
Score = 33.8 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK-----IELNHKAKIGNTKSIDSLI 85
++Q + + + +R+ + R+ ++K E + + +
Sbjct: 289 KEKRRAQRQRRWEKRTAHVVEKMQQRQDKRRQNLRKKKAARAERRLDKARKKGRILPQDL 348
Query: 86 SCSGL 90
+GL
Sbjct: 349 ERAGL 353
>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 322
Score = 33.8 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQ 65
+ + GLI V+V + I+ V S + + R+ +RR+++ E ++
Sbjct: 6 TPIIYGLIFVAVLLIVEGIYLLVFGKSISLNNRVNR-----RLEMLDKGQRREQVLEQLR 60
Query: 66 KIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFL 123
K H G + S + + S IG V+ L LTL + T +
Sbjct: 61 KEATQHSKAQGIPFYSLLASKAQKANIAFSPMA-LIGVMVLVSFIAFLGLTLGTQASTPV 119
Query: 124 CVSVSSALVF 133
++ +
Sbjct: 120 RAVLAVGMGV 129
>gi|281349327|gb|EFB24911.1| hypothetical protein PANDA_009535 [Ailuropoda melanoleuca]
Length = 226
Score = 33.8 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK-----IELNHKAKIGNTKSIDSLI 85
++Q + + + +R+ + R+ ++K E + + +
Sbjct: 162 KEKRRAQRQRRWEKRTAHVVEKMQQRQDKRRQNLRKKKAARAERRLDKARKKGRILPQDL 221
Query: 86 SCSGL 90
+GL
Sbjct: 222 ERAGL 226
>gi|322693138|gb|EFY85010.1| transcriptional regulator Cwf13/SkiP [Metarhizium acridum CQMa 102]
Length = 498
Score = 33.8 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
I+ D +Q V A+R ++R +++ + + E K + + + +
Sbjct: 191 ISINDKHAQFAEAVKMAERHA-REEVQQRALMQQRLAEKEKAQKDENLRALAQKAREERA 249
Query: 89 G 89
G
Sbjct: 250 G 250
>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 321
Score = 33.8 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 45 ADRVIPTANTKRRKELREAIQKIEL------NHKAKIGNTK-----SIDSLISCSGLPIS 93
A R RR +L+E E + T +L + SG+ +
Sbjct: 31 AGRSDKRTAINRRMKLQENKISQEQVLVQLRKERGLDAGTPLFSADRFRALRTQSGMIMP 90
Query: 94 KQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
+ + +C + ++++ + V + P
Sbjct: 91 LSKFLMITCGVAMAMALVAIWYGLPPLMGFVLFVVLMPLLP 131
>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 336
Score = 33.4 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 13 ITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL--REAIQKIELN 70
+TV++ FL + + + +++ +++ E+ ++A+ +
Sbjct: 17 VTVALGIFLIFLGLTLYIKHRRWQERLHQLIGRHLEATSSSQDTSPEILPQKALLSWRIR 76
Query: 71 HKAKI-GNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL--SSSFF---TFLC 124
K K T + +GL I+ + + +C L + L +
Sbjct: 77 EKLKDLIITPKFRRELLTAGLGIAADKFILVRLAGALLCSFLVMLLIPGNYPLFRTIAAI 136
Query: 125 VSVSSALVFPRFF 137
+ + PR +
Sbjct: 137 FGLIAGYQLPRAY 149
>gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A]
gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 383
Score = 33.4 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 4/59 (6%), Positives = 16/59 (27%)
Query: 75 IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVF 133
+ + + + I+ + + + V +S+ F + +
Sbjct: 116 RKPNTDLAKSLYQADIEITPGMFISLAIITSLFVAVFMFVISTVLFYGMPNAFVYVFSL 174
>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 315
Score = 33.4 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 44/132 (33%), Gaps = 10/132 (7%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
W +G+ + + ++ A++ + T +RR Q
Sbjct: 8 WLTIGVALLCCV-LGIVGIQLYASGARRHAELVARLDESGAPEGTGRRRRR------FQG 60
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF--TFLC 124
++ + + + ++ I+ +GL + + + + V+ S FF
Sbjct: 61 VDRRVR-RTALGRKLELRIAATGLDTTPGEFTVALAATVAVLWVVGQAALSPFFGPICGL 119
Query: 125 VSVSSALVFPRF 136
+ + A+ + +
Sbjct: 120 LGIWVAMGYLGW 131
>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 298
Score = 33.4 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+E+ + + K + ++ S Y S ++G +S + S++ L
Sbjct: 36 VEVLQQDRKTIWKKFEERLAKSRSGWGVNQYVTLSFLLGIASFGVSSQILQSWWMALPAL 95
Query: 127 VSSAL 131
++ L
Sbjct: 96 LAGIL 100
>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 325
Score = 33.4 bits (75), Expect = 9.5, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 1/125 (0%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
L+ + V +Y + N P + + + + A + K+ A
Sbjct: 10 ILLFVAVVLCVEGIYLWWNNAHGPAAKRIEARLRALSAGGHVGAEQLSILKKRLLADSPR 69
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF-FTFLCVS 126
++ ++D + SG S + ++ L L L
Sbjct: 70 LQQWLMRVPRIGALDRWLEQSGSTWSVAQLFGYCALVVLCTVALIPLLPLPASLVMLGAV 129
Query: 127 VSSAL 131
+++ L
Sbjct: 130 LAAML 134
>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 284
Score = 33.4 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 74 KIGNTKSIDSLISCSGL-PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV 132
+ I + +G+ ++ + S + G + GVL L+ ++F + +
Sbjct: 29 RTRREPKIVVTLRKAGMHTVTPSAFTGVSILSGVLAGVLLFALT-GLWSFAFLGTGGGFI 87
Query: 133 FPR 135
PR
Sbjct: 88 MPR 90
>gi|326797660|ref|YP_004315479.1| ATPase P [Sphingobacterium sp. 21]
gi|326548424|gb|ADZ76809.1| heavy metal translocating P-type ATPase [Sphingobacterium sp. 21]
Length = 828
Score = 33.4 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIE 68
+ G TVSV + + K + + ++I + + + I K
Sbjct: 107 IKGFTTVSVSGTGVMYIEFDHHKINQKEVERSITAMGIKIISNEQAQFIGQKSDGIDKHL 166
Query: 69 LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ + + G + I S ++ I LS + + LC
Sbjct: 167 DKKNEESKSKEHDHVHGGIFGKNAEL-VFSIISGILLGIGFGLSFLEGLAPWVSLCFLFG 225
Query: 129 SAL 131
+
Sbjct: 226 AYF 228
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.142 0.357
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 874,253,791
Number of Sequences: 14124377
Number of extensions: 25280395
Number of successful extensions: 614332
Number of sequences better than 10.0: 1346
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 675
Number of HSP's that attempted gapping in prelim test: 608800
Number of HSP's gapped (non-prelim): 5584
length of query: 137
length of database: 4,842,793,630
effective HSP length: 102
effective length of query: 35
effective length of database: 3,402,107,176
effective search space: 119073751160
effective search space used: 119073751160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 76 (33.8 bits)