RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780723|ref|YP_003065136.1| hypothetical protein
CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 148

 Score = 26.1 bits (57), Expect = 1.3
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 49  IPTANTKRRKELREAIQKIELNHKAKIGNTK---SIDSLISCSGLPIS--KQHYYIGSCV 103
               + +  K  ++++ K++    A     +    I   IS SG+ I   K         
Sbjct: 27  DDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIIDEKTGVIEHEHP 86

Query: 104 IGFIC 108
           +  I 
Sbjct: 87  VNKIS 91


>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 94

 Score = 23.6 bits (51), Expect = 6.1
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 10/54 (18%)

Query: 58  KELREAIQKIELNHKAK----------IGNTKSIDSLISCSGLPISKQHYYIGS 101
           K+L+E ++K+ +   AK          I + +  +SL +  GL + K+   +  
Sbjct: 11  KKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELAD 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,709
Number of extensions: 19989
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)