HHsearch alignment for GI: 254780724 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=97.15 E-value=0.00043 Score=47.18 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHH-C--CCCCCEEEE-ECCHHHCCCCCCEEEEEEECCCCCC---CCCCHHHHHHHH
Q ss_conf 25884899818888888999999830-3--876767999-6421312567875677874166665---300018999987
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRY-I--DKDERIVTC-EDTAELQLQQPHVVRLETRPPNIEG---EGEITMRDLVKN 320 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~-i--~~~~rivtI-ED~~El~l~~~~~v~~~~~~~~~e~---~~~~t~~~ll~~ 320 (483)
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~vv~~~~el~~ai~- 277 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI--GAVEQLKTYADIMGVPLEVVYSPKELAEAIE- 277 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHHHHCCCEEEECCHHHHHHHHH-
T ss_conf 4685799989988758879999999997532576068997144115--2899999999986995599639999999999-
Q ss_pred HHHCCCCEEEECCC-C---CHHH----HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHH
Q ss_conf 52059988996575-8---7999----9999998739701020004788888999999
Q gi|254780724|r 321 CLRMRPERIILGEV-R---GPEV----LDLLQAMNTGHDGSMGTIHANNARESFGRME 370 (483)
Q Consensus 321 aLR~~PD~IiVGEi-R---g~Ea----~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~ 370 (483)
T Consensus 278 ~l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~--~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 278 ALRDC-DVILVDTAGRSQYDKEKIEELKELIDVSHSIE--VYLVLSATTKYEDLKEII 332 (407)
T ss_pred HHHCC-CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE--EEEEEECCCCHHHHHHHH
T ss_conf 85318-88999689988337899999999970356621--799984576468899999