HHsearch alignment for GI: 254780724 and conserved domain: COG2804
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=2.8e-45 Score=335.03 Aligned_cols=263 Identities=26% Similarity=0.373 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCC---EEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 896789999999999885656335885883321799856991---89982783897176207989999999999998098
Q gi|254780724|r 105 MSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNK---VFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGR 181 (483)
Q Consensus 105 ~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~---I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~ 181 (483)
T Consensus 119 ~d~apvv~l~n~il~~A~~~~----------ASDIHiep~~~~~~IrfRidGvL~~~~~~--~~~~~~~lvsriK~ma~L 186 (500)
T COG2804 119 ADDAPVVKLINKILSEALREG----------ASDIHIEPRENRYRIRFRIDGVLREVLEP--PKELAAALVSRLKVMAGL 186 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHCC----------CCCEEEEECCCEEEEEEEECCEEEEHHCC--CHHHHHHHHHHHHHHHCC
T ss_conf 544559999999999999749----------98167872257079999879996001115--888999999999988437
Q ss_pred CCCCCCCEEEEEEC---CCC--EEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 12433877879823---762--0345315535788168884057654667888650699889999989862258848998
Q gi|254780724|r 182 RVDESSPICDARLL---DGS--RVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLIS 256 (483)
Q Consensus 182 ~i~~~~P~~d~~lp---dg~--Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVs 256 (483)
T Consensus 187 DIaErR~PQdGr~~~~~~~~~vd~RvStlP-~~~GEkvVlRil~~~~~-~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvT 264 (500)
T COG2804 187 DIAERRLPQDGRIRLKLNGRKVDFRVSTLP-TFYGEKVVLRILDKDQV-ILDLEKLGMSPFQLARLLRLLNRPQGLILVT 264 (500)
T ss_pred CHHHCCCCCCCEEEEEECCEEEEEEEECCC-CCCCCEEEEEEECCCCC-CCCHHHHCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 525201787762899808835889995578-87785789998333124-6888783899889999999972897089996
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 18888888999999830387-67679996421312567875677874166665300018999987520599889965758
Q gi|254780724|r 257 GGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 257 G~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
T Consensus 265 GPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~q-------VN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 265 GPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQ-------VNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEE-------CCCCCCCCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8999988999999999862788508984078045159851563-------140359978999999866599859983557
Q ss_pred CHHHHH-HHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 799999-9999873970102000478888899999975530467999899999997423588999
Q gi|254780724|r 336 GPEVLD-LLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQT 399 (483)
Q Consensus 336 g~Ea~~-~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~ 399 (483)
T Consensus 338 D~ETAeiavqAalTGHL-VlSTlHtnda~~ai~RL~~mG------v~~~----~l~s~l~gViaQ 391 (500)
T COG2804 338 DLETAEIAVQAALTGHL-VLSTLHTNDAPGAITRLLEMG------VEPY----LLASSLLGVIAQ 391 (500)
T ss_pred CHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHCC------CCHH----HHHHHHHHHHHH
T ss_conf 78899999999842886-766102176588999999849------9889----999999999998