HHsearch alignment for GI: 254780724 and conserved domain: COG2805
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=4.3e-37 Score=277.77 Aligned_cols=253 Identities=25% Similarity=0.368 Sum_probs=201.9
Q ss_pred CCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE--ECCCCEEEEECCCCCCC
Q ss_conf 8332179985699189982783897176207989999999999998098124338778798--23762034531553578
Q gi|254780724|r 133 RDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDAR--LLDGSRVNVIIPPLALD 210 (483)
Q Consensus 133 D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~--lpdg~Ri~~~~~p~s~~ 210 (483)
T Consensus 14 ~~~aSDiHL~~G~pp~~Ri~G~l~~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~-qr~ 92 (353)
T COG2805 14 KNGASDLHLSAGLPPRIRIDGELRPINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPGVARFRVNAFK-QRG 92 (353)
T ss_pred HCCCCCHHHCCCCCCEEEECCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEECCCCCEEEEEHHH-HCC
T ss_conf 5698701112699935975680655689989989999999998597889999871251478862775168864555-468
Q ss_pred CCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEECCHH
Q ss_conf 8168884057654667888650699889999989862258848998188888889999998303876--76799964213
Q gi|254780724|r 211 GPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCEDTAE 288 (483)
Q Consensus 211 G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIED~~E 288 (483)
T Consensus 93 ~~a~vlR~Ip~~i~~~e~L---gl-P~i---~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE 165 (353)
T COG2805 93 GYALVLRLIPSKIPTLEEL---GL-PPI---VRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIE 165 (353)
T ss_pred CCEEEEECCCCCCCCHHHC---CC-CHH---HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 8379976167668998781---99-779---9999828796699867999967879999999984147751687237468
Q ss_pred HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHH
Q ss_conf 1256787567787416666530001899998752059988996575879999-999998739701020004788888999
Q gi|254780724|r 289 LQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFG 367 (483)
Q Consensus 289 l~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~ 367 (483)
T Consensus 166 ~vh~skksl--I-~QREv-G~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHL-V~~TLHT~sA~~ti~ 240 (353)
T COG2805 166 YVHESKKSL--I-NQREV-GRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHL-VFGTLHTNSAAKTID 240 (353)
T ss_pred HHHCCHHHH--H-HHHHH-CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHH
T ss_conf 650432766--6-68774-542788999999986029997998213469999999989860887-777402363777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 99975530467999899999997423588999876
Q gi|254780724|r 368 RMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 368 RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
T Consensus 241 RiidvFp~~----ek~~vR~~La~sL~aVisQ~L~ 271 (353)
T COG2805 241 RIIDVFPAE----EKDQVRSQLAESLRAVISQRLL 271 (353)
T ss_pred HHHHHCCHH----HHHHHHHHHHHHHHHHHHHHCE
T ss_conf 988738863----4679999999999999763310