HHsearch alignment for GI: 254780724 and conserved domain: COG3596

Probab=96.89  E-value=0.0025  Score=41.87  Aligned_cols=109  Identities=27%  Similarity=0.402  Sum_probs=58.3

Q ss_pred             HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCE-EEEECCHHHCCC-CCCEEEEEEECCCCCCCC-CCHHHH
Q ss_conf             998986225884899818888888999999830-3876767-999642131256-787567787416666530-001899
Q gi|254780724|r  241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERI-VTCEDTAELQLQ-QPHVVRLETRPPNIEGEG-EITMRD  316 (483)
Q Consensus       241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~ri-vtIED~~El~l~-~~~~v~~~~~~~~~e~~~-~~t~~~  316 (483)
T Consensus        30 ~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~  109 (296)
T COG3596          30 RMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ  109 (296)
T ss_pred             HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             12112036861589743777768899999970267342104668870156774126652488437885532022189999


Q ss_pred             HHHHHHHCCCC---EEEECCCCCHHH-HHHH-HHHHCCC
Q ss_conf             99875205998---899657587999-9999-9987397
Q gi|254780724|r  317 LVKNCLRMRPE---RIILGEVRGPEV-LDLL-QAMNTGH  350 (483)
Q Consensus       317 ll~~aLR~~PD---~IiVGEiRg~Ea-~~~l-~A~~TGH  350 (483)
T Consensus       110 ~~~d~l-~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~  147 (296)
T COG3596         110 LYRDYL-PKLDLVLWLIKADDRALGTDEDFLRDVIILGL  147 (296)
T ss_pred             HHHHHH-HHCCEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             999886-32247999614777001477999999998605