HHsearch alignment for GI: 254780724 and conserved domain: COG3854
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=99.30 E-value=3.7e-10 Score=89.61 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=137.6
Q ss_pred CCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCE
Q ss_conf 33217998569918998278389717620798999999999999809812433877879823762034531553578816
Q gi|254780724|r 134 DDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPT 213 (483)
Q Consensus 134 ~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~ 213 (483)
T Consensus 25 ~~l~Evri~v~Rp~e~~~~~~~vyl~~~~vT~ed~~~~~~rls~ysiys~e~elr~Gyit~~ggHRVg~~g~~~~E~~~v 104 (308)
T COG3854 25 NNLEEVRIRVNRPLEAIFPGQPVYLSYIGVTKEDLQKTLNRLSGYSIYSVEEELRAGYITIRGGHRVGLAGNVTLEEGKV 104 (308)
T ss_pred CCCEEEEEECCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCEEEECCCCCCCCCCC
T ss_conf 04023676459984476189740105565418899999997356400031645416505762362565213300234652
Q ss_pred EEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHCCC------CCCEEEEECC
Q ss_conf 8884057654667888650699889999989862-25884899818888888999999830387------6767999642
Q gi|254780724|r 214 LTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIG-RIRCNVLISGGTGSGKTTLLNCLTRYIDK------DERIVTCEDT 286 (483)
Q Consensus 214 i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v-~~~~nilVsG~TGSGKTT~L~al~~~i~~------~~rivtIED~ 286 (483)
T Consensus 105 kt~rdI~slniRv~r-~v~Gt~~~-l---i~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 105 KTIRDISSLNIRVAR-QVFGTANP-L---IKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred CCEEEECEEEEEEHH-HHHCCCHH-H---HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 321000204554114-56556218-8---999984372246996599887077999999986315112677328997150
Q ss_pred HHHCC--CCCCEEEEEEEC--CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-HHHHHHHHHHCCCCEEEHHHCCCC
Q ss_conf 13125--678756778741--6666530001899998752059988996575879-999999998739701020004788
Q gi|254780724|r 287 AELQL--QQPHVVRLETRP--PNIEGEGEITMRDLVKNCLRMRPERIILGEVRGP-EVLDLLQAMNTGHDGSMGTIHANN 361 (483)
Q Consensus 287 ~El~l--~~~~~v~~~~~~--~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~-Ea~~~l~A~~TGH~G~ltTlHa~s 361 (483)
T Consensus 180 sEIag~~~gvpq~~~g~R~dVld~cpk~-~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~~~GVk-li~TaHG~~ 254 (308)
T COG3854 180 SEIAGCLNGVPQHGRGRRMDVLDPCPKA-EGMMMAIR---SMSPEVIIVDEIGTEEDALAILTALHAGVK-LITTAHGNG 254 (308)
T ss_pred CHHHCCCCCCCHHHHHHHHHHCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCC
T ss_conf 0430343588603232210104656178-88999999---549957998343647779999999854858-999504411
Q ss_pred HHHHHHH
Q ss_conf 8889999
Q gi|254780724|r 362 ARESFGR 368 (483)
Q Consensus 362 ~~~ai~R 368 (483)
T Consensus 255 iedl~kr 261 (308)
T COG3854 255 IEDLIKR 261 (308)
T ss_pred HHHHHCC
T ss_conf 7776508