HHsearch alignment for GI: 254780724 and conserved domain: COG4178
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].
Probab=97.19 E-value=0.00069 Score=45.77 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=74.6
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-CCHHHCCCCCCEEEEEE-----ECCCCCC--------
Q ss_conf 898622588489981888888899999983038767679996-42131256787567787-----4166665--------
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE-DTAELQLQQPHVVRLET-----RPPNIEG-------- 308 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE-D~~El~l~~~~~v~~~~-----~~~~~e~-------- 308 (483)
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~ 491 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELV 491 (604)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHH
T ss_conf 52654799879987899987889999996458567874416898755771488777876589998089997779959999
Q ss_pred -----------------------------CCCCHHHHHHHHHHHCCCCEEEECCCCC---HHHH-HHHHHHHC---CCCE
Q ss_conf -----------------------------3000189999875205998899657587---9999-99999873---9701
Q gi|254780724|r 309 -----------------------------EGEITMRDLVKNCLRMRPERIILGEVRG---PEVL-DLLQAMNT---GHDG 352 (483)
Q Consensus 309 -----------------------------~~~~t~~~ll~~aLR~~PD~IiVGEiRg---~Ea~-~~l~A~~T---GH~G 352 (483)
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA----RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~-t 566 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA----RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-T 566 (604)
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHCCHHHHHHHHHH----HHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCC-E
T ss_conf 999981919899987332757664585278999999----99970999899806011259578999999998548997-8
Q ss_pred EEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 02000478888899999975530
Q gi|254780724|r 353 SMGTIHANNARESFGRMEAMIAM 375 (483)
Q Consensus 353 ~ltTlHa~s~~~ai~RL~~m~~~ 375 (483)
T Consensus 567 vISV~Hr~tl~~~h~~~l~l~~~ 589 (604)
T COG4178 567 VISVGHRPTLWNFHSRQLELLDD 589 (604)
T ss_pred EEEECCCHHHHHHHHHHEEECCC
T ss_conf 99955600057887543231146