HHsearch alignment for GI: 254780724 and conserved domain: COG4962

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=100.00  E-value=0  Score=675.57  Aligned_cols=345  Identities=59%  Similarity=0.923  Sum_probs=334.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCC
Q ss_conf             99999999999999741877896789999999999885656335885883321799856991899827838971762079
Q gi|254780724|r   85 SARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRD  164 (483)
Q Consensus        85 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~  164 (483)
T Consensus         8 ~~k~~~~~~v~~~~~~~~~~~~~~e~~~l~~~i~~~~~g~G~Le~ll~dd~i~dImVn~~~~v~v~~~~~~~~t~irf~d   87 (355)
T COG4962           8 RGKRSLKDEVREYVRENNIAISEAELDSLARDIQDELTGYGPLEPLLADDDIEDIMVNGPGRVFVERKGGLEPTDIRFLD   87 (355)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf             54255677889998741422225789999999998750623200344089741688627873899932745457862489


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf             89999999999998098124338778798237620345315535788168884057654667888650699889999989
Q gi|254780724|r  165 NEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQ  244 (483)
Q Consensus       165 ~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~  244 (483)
T Consensus        88 ~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~~pPva~dGp~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~  167 (355)
T COG4962          88 EAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNANSPPVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLR  167 (355)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf             89999999999998588104689636526798866775248632578750441256552559999873895889999999


Q ss_pred             HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             86225884899818888888999999830387676799964213125678756778741666653000189999875205
Q gi|254780724|r  245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM  324 (483)
Q Consensus       245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~  324 (483)
T Consensus       168 ~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRm  247 (355)
T COG4962         168 RAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRM  247 (355)
T ss_pred             HHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHC
T ss_conf             99862015999678788799999999715797650899812366446998557886348877776558899999987532


Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf             99889965758799999999987397010200047888889999997553046799989999999742358899987699
Q gi|254780724|r  325 RPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRD  404 (483)
Q Consensus       325 ~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~d  404 (483)
T Consensus       248 RPDRIiVGEVRG~Ea~dLL~AmnTGHdG~~~TlHans~~ea~~rle~l~~~~~----~~~~~~~i~~aidiiv~~~r~~~  323 (355)
T COG4962         248 RPDRIIVGEVRGVEALDLLQAMNTGHDGGMGTLHANSPREALTRLEQLIAEGG----VQTIRRQIASAVDVIVQIARLGD  323 (355)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHC----CCCHHHHHHCCCEEEEEECCCCC
T ss_conf             86536888860705999998752688985021206987888898999986502----22417776312339987245666


Q ss_pred             CCEEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf             987899999998414988998678987540
Q gi|254780724|r  405 GSRRITNICEIVGMEGNVIITQDLLKYEVM  434 (483)
Q Consensus       405 G~Rrv~~I~Ev~g~e~~~~~~~~if~~~~~  434 (483)
T Consensus       324 g-rri~~i~~v~g~~~~~~~~~~~~~~~~~  352 (355)
T COG4962         324 G-RRITEIAEVTGMEGGVYVTQDIFEFDPG  352 (355)
T ss_pred             C-CCCEEEEEEEEEECCEEEEEEEEEECCC
T ss_conf             6-5330034686442437997157540467