HHsearch alignment for GI: 254780724 and conserved domain: COG4962
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=675.57 Aligned_cols=345 Identities=59% Similarity=0.923 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCC
Q ss_conf 99999999999999741877896789999999999885656335885883321799856991899827838971762079
Q gi|254780724|r 85 SARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRD 164 (483)
Q Consensus 85 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~ 164 (483)
T Consensus 8 ~~k~~~~~~v~~~~~~~~~~~~~~e~~~l~~~i~~~~~g~G~Le~ll~dd~i~dImVn~~~~v~v~~~~~~~~t~irf~d 87 (355)
T COG4962 8 RGKRSLKDEVREYVRENNIAISEAELDSLARDIQDELTGYGPLEPLLADDDIEDIMVNGPGRVFVERKGGLEPTDIRFLD 87 (355)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 54255677889998741422225789999999998750623200344089741688627873899932745457862489
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999998098124338778798237620345315535788168884057654667888650699889999989
Q gi|254780724|r 165 NEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQ 244 (483)
Q Consensus 165 ~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~ 244 (483)
T Consensus 88 ~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~~pPva~dGp~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~ 167 (355)
T COG4962 88 EAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNANSPPVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLR 167 (355)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 89999999999998588104689636526798866775248632578750441256552559999873895889999999
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 86225884899818888888999999830387676799964213125678756778741666653000189999875205
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
T Consensus 168 ~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRm 247 (355)
T COG4962 168 RAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRM 247 (355)
T ss_pred HHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHC
T ss_conf 99862015999678788799999999715797650899812366446998557886348877776558899999987532
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 99889965758799999999987397010200047888889999997553046799989999999742358899987699
Q gi|254780724|r 325 RPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRD 404 (483)
Q Consensus 325 ~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~d 404 (483)
T Consensus 248 RPDRIiVGEVRG~Ea~dLL~AmnTGHdG~~~TlHans~~ea~~rle~l~~~~~----~~~~~~~i~~aidiiv~~~r~~~ 323 (355)
T COG4962 248 RPDRIIVGEVRGVEALDLLQAMNTGHDGGMGTLHANSPREALTRLEQLIAEGG----VQTIRRQIASAVDVIVQIARLGD 323 (355)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHC----CCCHHHHHHCCCEEEEEECCCCC
T ss_conf 86536888860705999998752688985021206987888898999986502----22417776312339987245666
Q ss_pred CCEEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 987899999998414988998678987540
Q gi|254780724|r 405 GSRRITNICEIVGMEGNVIITQDLLKYEVM 434 (483)
Q Consensus 405 G~Rrv~~I~Ev~g~e~~~~~~~~if~~~~~ 434 (483)
T Consensus 324 g-rri~~i~~v~g~~~~~~~~~~~~~~~~~ 352 (355)
T COG4962 324 G-RRITEIAEVTGMEGGVYVTQDIFEFDPG 352 (355)
T ss_pred C-CCCEEEEEEEEEECCEEEEEEEEEECCC
T ss_conf 6-5330034686442437997157540467