HHsearch alignment for GI: 254780724 and conserved domain: COG5008
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.96 E-value=1.5e-27 Score=211.01 Aligned_cols=234 Identities=26% Similarity=0.362 Sum_probs=175.0
Q ss_pred CHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCE-EEEEECCCC--EEEE
Q ss_conf 358858833217998569918998278389717620798999999999999809-812433877-879823762--0345
Q gi|254780724|r 127 LQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG-RRVDESSPI-CDARLLDGS--RVNV 202 (483)
Q Consensus 127 L~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g-~~i~~~~P~-~d~~lpdg~--Ri~~ 202 (483)
T Consensus 10 lL~~m~~~~aSDlfIt~g~Ppsmkv~g~~tpi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnA 89 (375)
T COG5008 10 LLDLMVEQKASDLFITAGFPPSMKVDGKLTPITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNA 89 (375)
T ss_pred HHHHHHHCCCCCEEEECCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEH
T ss_conf 99999856777458974899636655724115788887899999999986499999987526522799748886077406
Q ss_pred ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCE
Q ss_conf 315535788168884057654667888650699889999989862258848998188888889999998303876--767
Q gi|254780724|r 203 IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERI 280 (483)
Q Consensus 203 ~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~ri 280 (483)
T Consensus 90 f~---qr~~~g~VlRrI~~~IPt~eeL~L----Pe---vlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 90 FY---QRGLAGLVLRRIETKIPTFEELKL----PE---VLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred HH---HCCCCEEEEEEECCCCCCHHHCCC----CH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCE
T ss_conf 66---477740156440115884776198----48---899752043745999877888840168998601346887735
Q ss_pred EEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHCCCCEEEHHHCC
Q ss_conf 9996421312567875677874166665300018999987520599889965758799999-999987397010200047
Q gi|254780724|r 281 VTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLD-LLQAMNTGHDGSMGTIHA 359 (483)
Q Consensus 281 vtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~l~A~~TGH~G~ltTlHa 359 (483)
T Consensus 160 iTIEDPIEfih~h~~CIvTQRE---v-GvDTesw~~AlkNtlRQaPDvI~IGEvRsretMeyAi~fAeTGHL-cmaTLHA 234 (375)
T COG5008 160 ITIEDPIEFIHKHKRCIVTQRE---V-GVDTESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHL-CMATLHA 234 (375)
T ss_pred EEECCHHHHHHCCCCEEEEEEE---E-CCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 8823819987415641587334---1-446188999999877518986999730437679999988732865-8998505
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8888899999975530
Q gi|254780724|r 360 NNARESFGRMEAMIAM 375 (483)
Q Consensus 360 ~s~~~ai~RL~~m~~~ 375 (483)
T Consensus 235 N~anQaleRIinffP~ 250 (375)
T COG5008 235 NNANQALERIINFFPE 250 (375)
T ss_pred CCCHHHHHHHHHHCCH
T ss_conf 7715789999863968