HHsearch alignment for GI: 254780724 and conserved domain: KOG0054

>KOG0054 consensus.
Probab=96.92  E-value=0.0039  Score=40.55  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=93.0

Q ss_pred             HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCC---CCHHHHHHH
Q ss_conf             89862258848998188888889999998303876767999642131256787567787416666530---001899998
Q gi|254780724|r  243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEG---EITMRDLVK  319 (483)
Q Consensus       243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~---~~t~~~ll~  319 (483)
T Consensus       540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~-Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~  618 (1381)
T KOG0054         540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVP-QQPWIQNGTVRENILFGSPYDEERYDKVIK  618 (1381)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEC-CCCHHHCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf             1589628988999899988889999999658755675599847489866-655641785667500687035999999999


Q ss_pred             HH-H----H--CCCCEEEECC----CCCH-HHH-HHHHHHHCCCCE-----EEHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             75-2----0--5998899657----5879-999-999998739701-----02000478888899999975530467999
Q gi|254780724|r  320 NC-L----R--MRPERIILGE----VRGP-EVL-DLLQAMNTGHDG-----SMGTIHANNARESFGRMEAMIAMGGFTLP  381 (483)
Q Consensus       320 ~a-L----R--~~PD~IiVGE----iRg~-Ea~-~~l~A~~TGH~G-----~ltTlHa~s~~~ai~RL~~m~~~~~~~~~  381 (483)
T Consensus       619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~-KT~I  697 (1381)
T KOG0054         619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRG-KTVI  697 (1381)
T ss_pred             HCCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf             706776797468987535778862776769999999999865799898879632240776699999999876459-8899


Q ss_pred             HHHHHHHHHHHCCEEEEEE
Q ss_conf             8999999974235889998
Q gi|254780724|r  382 SQMVREIITSSLDVIVQTQ  400 (483)
Q Consensus       382 ~~~~~~~ia~avd~iV~~~  400 (483)
T Consensus       698 LVTHql~~L~~ad~Iivl~  716 (1381)
T KOG0054         698 LVTHQLQFLPHADQIIVLK  716 (1381)
T ss_pred             EEECCHHHHHHCCEEEEEC
T ss_conf             9847166452288999952