HHsearch alignment for GI: 254780724 and conserved domain: KOG0054
>KOG0054 consensus.
Probab=96.92 E-value=0.0039 Score=40.55 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=93.0
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCC---CCHHHHHHH
Q ss_conf 89862258848998188888889999998303876767999642131256787567787416666530---001899998
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEG---EITMRDLVK 319 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~---~~t~~~ll~ 319 (483)
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~-Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~ 618 (1381)
T KOG0054 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVP-QQPWIQNGTVRENILFGSPYDEERYDKVIK 618 (1381)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEC-CCCHHHCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf 1589628988999899988889999999658755675599847489866-655641785667500687035999999999
Q ss_pred HH-H----H--CCCCEEEECC----CCCH-HHH-HHHHHHHCCCCE-----EEHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 75-2----0--5998899657----5879-999-999998739701-----02000478888899999975530467999
Q gi|254780724|r 320 NC-L----R--MRPERIILGE----VRGP-EVL-DLLQAMNTGHDG-----SMGTIHANNARESFGRMEAMIAMGGFTLP 381 (483)
Q Consensus 320 ~a-L----R--~~PD~IiVGE----iRg~-Ea~-~~l~A~~TGH~G-----~ltTlHa~s~~~ai~RL~~m~~~~~~~~~ 381 (483)
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~-KT~I 697 (1381)
T KOG0054 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRG-KTVI 697 (1381)
T ss_pred HCCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 706776797468987535778862776769999999999865799898879632240776699999999876459-8899
Q ss_pred HHHHHHHHHHHCCEEEEEE
Q ss_conf 8999999974235889998
Q gi|254780724|r 382 SQMVREIITSSLDVIVQTQ 400 (483)
Q Consensus 382 ~~~~~~~ia~avd~iV~~~ 400 (483)
T Consensus 698 LVTHql~~L~~ad~Iivl~ 716 (1381)
T KOG0054 698 LVTHQLQFLPHADQIIVLK 716 (1381)
T ss_pred EEECCHHHHHHCCEEEEEC
T ss_conf 9847166452288999952