HHsearch alignment for GI: 254780724 and conserved domain: KOG0054

Probab=96.80  E-value=0.002  Score=42.58  Aligned_cols=122  Identities=18%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC--CHHHCCCCCCEEEEEEECCCCCCCCCCHHHHH
Q ss_conf             9998986225884899818888888999999830387676799964--21312567875677874166665300018999
Q gi|254780724|r  240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED--TAELQLQQPHVVRLETRPPNIEGEGEITMRDL  317 (483)
Q Consensus       240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED--~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~l  317 (483)
T Consensus      1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d---LR--srlsII-PQdPv----L 1225 (1381)
T KOG0054        1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD---LR--SRLSII-PQDPV----L 1225 (1381)
T ss_pred             HCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH---HH--HCCEEE-CCCCC----E
T ss_conf             13845997499768886898998899999999614765875998686525176889---97--447166-88985----5


Q ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             987520599889965758799999999987397010200047888889999997553046799989
Q gi|254780724|r  318 VKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQ  383 (483)
Q Consensus       318 l~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~  383 (483)
T Consensus      1226 FsGTvR~NLDP--f~e~sD~~IW~ALe~~~Lk~--~v~----~~p~----~Ld~~v~EgG~NfSvG 1279 (1381)
T KOG0054        1226 FSGTVRFNLDP--FDEYSDDEIWEALERCQLKD--VVS----SLPG----GLDSEVSEGGENFSVG 1279 (1381)
T ss_pred             ECCCCCCCCCC--CCCCCHHHHHHHHHHHCHHH--HHH----CCCC----CCCCEECCCCCCCCHH
T ss_conf             36756256697--54369899999999818199--986----1876----7885616798348777