HHsearch alignment for GI: 254780724 and conserved domain: KOG0057
>KOG0057 consensus.
Probab=96.63 E-value=0.0035 Score=40.84 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=61.8
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCHHHC----------CCCCCEEEEEEECCCCC-CCCCCH
Q ss_conf 62258848998188888889999998303876767999-6421312----------56787567787416666-530001
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTAELQ----------LQQPHVVRLETRPPNIE-GEGEIT 313 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~El~----------l~~~~~v~~~~~~~~~e-~~~~~t 313 (483)
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas 453 (591)
T KOG0057 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSAS 453 (591)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 86489789897899987889999999974468859998733765075776522167677664300659988632898768
Q ss_pred HHHHHHHHHHCCCCEE----------EECC----CCCHHH--HHHHHHHHCCCC
Q ss_conf 8999987520599889----------9657----587999--999999873970
Q gi|254780724|r 314 MRDLVKNCLRMRPERI----------ILGE----VRGPEV--LDLLQAMNTGHD 351 (483)
Q Consensus 314 ~~~ll~~aLR~~PD~I----------iVGE----iRg~Ea--~~~l~A~~TGH~ 351 (483)
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 899999999728378887366630326753444256406789999999845898