HHsearch alignment for GI: 254780724 and conserved domain: PHA00520

Probab=95.54  E-value=0.033  Score=34.07  Aligned_cols=108  Identities=22%  Similarity=0.281  Sum_probs=58.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             58848998188888889999998303876767999--6421312567875677874166665300018999987520599
Q gi|254780724|r  249 IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP  326 (483)
Q Consensus       249 ~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P  326 (483)
T Consensus       112 ~SG~~vv~G~t~sGKT~~lna~~~~~~~k~~~v~IRwGEp~e~yde~e~~~~---------~s-dL~~~l~v~l~a~~~~  181 (326)
T PHA00520        112 ASGMVIVTGGTGSGKTPLLNALGEPLGGKDKDVTVRWGEPLEGYDEAERPLY---------GS-DLNVFLAVILRAMLQH  181 (326)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC---------CC-CHHHHHHHHHHHHHCC
T ss_conf             0424999647888867556654210258998748983685433462013321---------04-4999999999986457


Q ss_pred             CEEEECCCCCHHHHHHHH-HHHCCCCEEEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             889965758799999999-9873970102000478888899999975530
Q gi|254780724|r  327 ERIILGEVRGPEVLDLLQ-AMNTGHDGSMGTIHANNARESFGRMEAMIAM  375 (483)
Q Consensus       327 D~IiVGEiRg~Ea~~~l~-A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~  375 (483)
T Consensus       182 ~vvvvDSlR~v~----~~l~Gnat~-GGIS----r~~y~~LTdl~n~aas  222 (326)
T PHA00520        182 RVVVVDSLRNVI----FALGGNATS-GGIS----RGAYDLLTDIGNMAAS  222 (326)
T ss_pred             CEEEEECHHHHH----HHCCCCCCC-CCHH----HHHHHHHHHHHHHHHH
T ss_conf             179952146666----441378787-7446----8899999888888876