HHsearch alignment for GI: 254780724 and conserved domain: PRK03992

>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=96.55  E-value=0.0053  Score=39.60  Aligned_cols=78  Identities=23%  Similarity=0.317  Sum_probs=55.5

Q ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             98986225884899818888888999999830387676799964213125678756778741666653000189999875
Q gi|254780724|r  242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC  321 (483)
Q Consensus       242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a  321 (483)
T Consensus       158 f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~--fi~v~-~s~l~sk---~----------vGesek~vr~lF~~A  221 (390)
T PRK03992        158 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVV-GSELVQK---F----------IGEGARLVRELFELA  221 (390)
T ss_pred             HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEE-HHHHHHC---C----------CCHHHHHHHHHHHHH
T ss_conf             997699999727868989997899999999874888--79966-7997524---5----------417999999999999


Q ss_pred             HHCCCCEEEECCCC
Q ss_conf             20599889965758
Q gi|254780724|r  322 LRMRPERIILGEVR  335 (483)
Q Consensus       322 LR~~PD~IiVGEiR  335 (483)
T Consensus       222 r~~aP~IiFiDEiD  235 (390)
T PRK03992        222 REKAPSIIFIDEID  235 (390)
T ss_pred             HHHCCCEEEHHHHH
T ss_conf             97099089714325