HHsearch alignment for GI: 254780724 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=96.55 E-value=0.0053 Score=39.60 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=55.5
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98986225884899818888888999999830387676799964213125678756778741666653000189999875
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
T Consensus 158 f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~--fi~v~-~s~l~sk---~----------vGesek~vr~lF~~A 221 (390)
T PRK03992 158 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVV-GSELVQK---F----------IGEGARLVRELFELA 221 (390)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEE-HHHHHHC---C----------CCHHHHHHHHHHHHH
T ss_conf 997699999727868989997899999999874888--79966-7997524---5----------417999999999999
Q ss_pred HHCCCCEEEECCCC
Q ss_conf 20599889965758
Q gi|254780724|r 322 LRMRPERIILGEVR 335 (483)
Q Consensus 322 LR~~PD~IiVGEiR 335 (483)
T Consensus 222 r~~aP~IiFiDEiD 235 (390)
T PRK03992 222 REKAPSIIFIDEID 235 (390)
T ss_pred HHHCCCEEEHHHHH
T ss_conf 97099089714325