HHsearch alignment for GI: 254780724 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.29 E-value=0.054 Score=32.55 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=48.4
Q ss_pred HHHHCCCCCHHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCC
Q ss_conf 886506998899999898622--588489981888888899999983038767679996421312567875677874166
Q gi|254780724|r 228 HLVSFGAVTAEGARLLQIIGR--IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPN 305 (483)
Q Consensus 228 ~l~~~g~~~~~~~~~l~~~v~--~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~ 305 (483)
T Consensus 169 ~lld~gF~-~~i~~i~~~~p~~~~r~~~lf-SATl~~~v~~la~--~~l~~p~~-i~v~~--~~~~-~~~i~~~~~~~~~ 240 (423)
T PRK04837 169 RMFDLGFI-KDIRWLFRRMPPANQRLNMLF-SATLSYRVRELAF--EHMNNPEY-VEVEP--EQKT-GHRIKEELFYPSN 240 (423)
T ss_pred HHHHCCCH-HHHHHHHHHCCCCHHEEEEEE-ECCCCHHHHHHHH--HHCCCCEE-EEECC--CCCC-CCCEEEEEEEECH
T ss_conf 54302639-999999996896221089997-0368889999999--97789879-99657--7656-6542699999172
Q ss_pred CCCCCCCHHHHHHHHHHH-CCCCEEEE-CCC-CCHHH-HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHH
Q ss_conf 665300018999987520-59988996-575-87999-99999987397010200047888889999997
Q gi|254780724|r 306 IEGEGEITMRDLVKNCLR-MRPERIIL-GEV-RGPEV-LDLLQAMNTGHDGSMGTIHANNARESFGRMEA 371 (483)
Q Consensus 306 ~e~~~~~t~~~ll~~aLR-~~PD~IiV-GEi-Rg~Ea-~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~ 371 (483)
T Consensus 241 -~~K-~----~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~--~~g~~--~~~lhg~~~q~~R~~~l~ 300 (423)
T PRK04837 241 -EEK-M----RLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA--ADGHR--VGLLTGDVPQKKRLRILE 300 (423)
T ss_pred -HHH-H----HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH--HCCCC--EEEECCCCCHHHHHHHHH
T ss_conf -779-9----999999984088746886162888999999997--65981--787225457999999999