HHsearch alignment for GI: 254780724 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=96.97  E-value=0.034  Score=33.94  Aligned_cols=162  Identities=18%  Similarity=0.229  Sum_probs=86.0

Q ss_pred             CCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHHHC-
Q ss_conf             7654667888650699889999989862258-----848998188888889999998303-876767999--6421312-
Q gi|254780724|r  220 KKDKLTLDHLVSFGAVTAEGARLLQIIGRIR-----CNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAELQ-  290 (483)
Q Consensus       220 ~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~-----~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~El~-  290 (483)
T Consensus        12 l~~~~tfdnFi~-g-~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~~   89 (234)
T PRK05642         12 LRDDATFANYYP-G-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGP   89 (234)
T ss_pred             CCCCCCHHCCCC-C-CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf             999777303571-8-75999999999876067877883899889999889999999999980799679978999875449


Q ss_pred             -----CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-H---HHHHHCCCCEEEHHHCC
Q ss_conf             -----5678756778741666653--00018999987520599889965758799999-9---99987397010200047
Q gi|254780724|r  291 -----LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVLD-L---LQAMNTGHDGSMGTIHA  359 (483)
Q Consensus       291 -----l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~---l~A~~TGH~G~ltTlHa  359 (483)
T Consensus        90 ~~~~~l~~~d~l~IDD-i~~i~g~~~~e~~lF~l~-N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~--~~~~~i~~  165 (234)
T PRK05642         90 ELLDNLEQYELVCIDD-LDVIAGKADWEEALFHLF-NRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTL--ALVFQMRG  165 (234)
T ss_pred             HHHHHHHHCCEEEEEC-HHHHCCCHHHHHHHHHHH-HHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHC--CCEEEECC
T ss_conf             9986242279898936-455468859999999999-9999839959995787955523001679999957--81275148


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             8888899999975530467999899999
Q gi|254780724|r  360 NNARESFGRMEAMIAMGGFTLPSQMVRE  387 (483)
Q Consensus       360 ~s~~~ai~RL~~m~~~~~~~~~~~~~~~  387 (483)
T Consensus       166 l~d~~~~~iL~~~a~~rgi~l~~~v~~y  193 (234)
T PRK05642        166 LSDEDKLRALQLRASRRGLHLTDEVGHF  193 (234)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             9989999999999775468999899999