HHsearch alignment for GI: 254780724 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=96.97 E-value=0.034 Score=33.94 Aligned_cols=162 Identities=18% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHHHC-
Q ss_conf 7654667888650699889999989862258-----848998188888889999998303-876767999--6421312-
Q gi|254780724|r 220 KKDKLTLDHLVSFGAVTAEGARLLQIIGRIR-----CNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAELQ- 290 (483)
Q Consensus 220 ~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~-----~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~El~- 290 (483)
T Consensus 12 l~~~~tfdnFi~-g-~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~~ 89 (234)
T PRK05642 12 LRDDATFANYYP-G-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGP 89 (234)
T ss_pred CCCCCCHHCCCC-C-CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 999777303571-8-75999999999876067877883899889999889999999999980799679978999875449
Q ss_pred -----CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-H---HHHHHCCCCEEEHHHCC
Q ss_conf -----5678756778741666653--00018999987520599889965758799999-9---99987397010200047
Q gi|254780724|r 291 -----LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVLD-L---LQAMNTGHDGSMGTIHA 359 (483)
Q Consensus 291 -----l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~---l~A~~TGH~G~ltTlHa 359 (483)
T Consensus 90 ~~~~~l~~~d~l~IDD-i~~i~g~~~~e~~lF~l~-N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~--~~~~~i~~ 165 (234)
T PRK05642 90 ELLDNLEQYELVCIDD-LDVIAGKADWEEALFHLF-NRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTL--ALVFQMRG 165 (234)
T ss_pred HHHHHHHHCCEEEEEC-HHHHCCCHHHHHHHHHHH-HHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHC--CCEEEECC
T ss_conf 9986242279898936-455468859999999999-9999839959995787955523001679999957--81275148
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8888899999975530467999899999
Q gi|254780724|r 360 NNARESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 360 ~s~~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
T Consensus 166 l~d~~~~~iL~~~a~~rgi~l~~~v~~y 193 (234)
T PRK05642 166 LSDEDKLRALQLRASRRGLHLTDEVGHF 193 (234)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9989999999999775468999899999