HHsearch alignment for GI: 254780724 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=95.77 E-value=0.015 Score=36.54 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=65.3
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 22588489981888888899999983-03876767999642131256787567787416666530001899998752059
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
T Consensus 95 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~-------L--~~----a~~~g~~~~~~~~l~--~ 159 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-------L--AA----AHHAGRLQDELVKLG--R 159 (254)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-------H--HH----HHHCCCHHHHHHHHH--C
T ss_conf 7658878998999986899999999999986996799877999999-------9--99----885580999999851--3
Q ss_pred CCEEEECCCC----CH-HHHHHHHHHHCCCCEEEHH-HCCCCHHHHHHHHH
Q ss_conf 9889965758----79-9999999987397010200-04788888999999
Q gi|254780724|r 326 PERIILGEVR----GP-EVLDLLQAMNTGHDGSMGT-IHANNARESFGRME 370 (483)
Q Consensus 326 PD~IiVGEiR----g~-Ea~~~l~A~~TGH~G~ltT-lHa~s~~~ai~RL~ 370 (483)
T Consensus 160 ~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye-~~S~IiTSn~~~~~W~~~f 209 (254)
T PRK06526 160 IPLLIVDEVGYIPFEAEAANLFFQLVSSRYE-RASLIVTSNKPFGRWGEVF 209 (254)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHC
T ss_conf 6877650213644788999999999999974-5886766589866888864