HHsearch alignment for GI: 254780724 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=97.02 E-value=0.024 Score=35.04 Aligned_cols=166 Identities=19% Similarity=0.277 Sum_probs=82.1
Q ss_pred EEECCCCCCCHHHHHHCCCCCHHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHHHC
Q ss_conf 84057654667888650699889999989862--258848998188888889999998303-876767999--6421312
Q gi|254780724|r 216 IRKFKKDKLTLDHLVSFGAVTAEGARLLQIIG--RIRCNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAELQ 290 (483)
Q Consensus 216 IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v--~~~~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~El~ 290 (483)
T Consensus 11 L~~~l~~~~tfdnFi~g-~-n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~~ 88 (235)
T PRK08084 11 LPLYLPDDETFASFYPG-D-NDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWFV 88 (235)
T ss_pred CCCCCCCCCCHHCCCCC-C-CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
T ss_conf 58999997663023448-8-699999999998578987699989999888999999999997079857998779866517
Q ss_pred ------CCCCCEEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHH----HHHHHCCCCEEEHHHC
Q ss_conf ------56787567787416666530--00189999875205998899657587999999----9998739701020004
Q gi|254780724|r 291 ------LQQPHVVRLETRPPNIEGEG--EITMRDLVKNCLRMRPERIILGEVRGPEVLDL----LQAMNTGHDGSMGTIH 358 (483)
Q Consensus 291 ------l~~~~~v~~~~~~~~~e~~~--~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~----l~A~~TGH~G~ltTlH 358 (483)
T Consensus 89 ~~~l~~l~~~dll~iDD-i~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~--g~~~~i~ 165 (235)
T PRK08084 89 PEVLEGMEQLSLVCIDN-IECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDW--GQIYKLQ 165 (235)
T ss_pred HHHHHHHHHCCEEEEEC-HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHC--CCEEEEC
T ss_conf 99998764189899827-45546997899999999999998489669996798824302312889999956--9727855
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 7888889999997553046799989999
Q gi|254780724|r 359 ANNARESFGRMEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~ 386 (483)
T Consensus 166 ~~dde~~~~iL~~~a~~rgl~l~~~V~~ 193 (235)
T PRK08084 166 PLSDEEKLQALQLRARLRGFELPEDVGR 193 (235)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9998999999999999739999989999