HHsearch alignment for GI: 254780724 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=97.02  E-value=0.024  Score=35.04  Aligned_cols=166  Identities=19%  Similarity=0.277  Sum_probs=82.1

Q ss_pred             EEECCCCCCCHHHHHHCCCCCHHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHHHC
Q ss_conf             84057654667888650699889999989862--258848998188888889999998303-876767999--6421312
Q gi|254780724|r  216 IRKFKKDKLTLDHLVSFGAVTAEGARLLQIIG--RIRCNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAELQ  290 (483)
Q Consensus       216 IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v--~~~~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~El~  290 (483)
T Consensus        11 L~~~l~~~~tfdnFi~g-~-n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~~   88 (235)
T PRK08084         11 LPLYLPDDETFASFYPG-D-NDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWFV   88 (235)
T ss_pred             CCCCCCCCCCHHCCCCC-C-CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
T ss_conf             58999997663023448-8-699999999998578987699989999888999999999997079857998779866517


Q ss_pred             ------CCCCCEEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHH----HHHHHCCCCEEEHHHC
Q ss_conf             ------56787567787416666530--00189999875205998899657587999999----9998739701020004
Q gi|254780724|r  291 ------LQQPHVVRLETRPPNIEGEG--EITMRDLVKNCLRMRPERIILGEVRGPEVLDL----LQAMNTGHDGSMGTIH  358 (483)
Q Consensus       291 ------l~~~~~v~~~~~~~~~e~~~--~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~----l~A~~TGH~G~ltTlH  358 (483)
T Consensus        89 ~~~l~~l~~~dll~iDD-i~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~--g~~~~i~  165 (235)
T PRK08084         89 PEVLEGMEQLSLVCIDN-IECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDW--GQIYKLQ  165 (235)
T ss_pred             HHHHHHHHHCCEEEEEC-HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHC--CCEEEEC
T ss_conf             99998764189899827-45546997899999999999998489669996798824302312889999956--9727855


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             7888889999997553046799989999
Q gi|254780724|r  359 ANNARESFGRMEAMIAMGGFTLPSQMVR  386 (483)
Q Consensus       359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~  386 (483)
T Consensus       166 ~~dde~~~~iL~~~a~~rgl~l~~~V~~  193 (235)
T PRK08084        166 PLSDEEKLQALQLRARLRGFELPEDVGR  193 (235)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             9998999999999999739999989999