HHsearch alignment for GI: 254780724 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.

Probab=97.34  E-value=0.0012  Score=44.12  Aligned_cols=39  Identities=36%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CCCEEEECCCCCCHHHHHHH-HHHHCCC-CCCEE--EEECCHH
Q ss_conf             88489981888888899999-9830387-67679--9964213
Q gi|254780724|r  250 RCNVLISGGTGSGKTTLLNC-LTRYIDK-DERIV--TCEDTAE  288 (483)
Q Consensus       250 ~~nilVsG~TGSGKTT~L~a-l~~~i~~-~~riv--tIED~~E  288 (483)
T Consensus        24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~   66 (501)
T PRK09302         24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPE   66 (501)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             9779998389999999999999999885599789998579999