HHsearch alignment for GI: 254780724 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=96.95 E-value=0.001 Score=44.53 Aligned_cols=95 Identities=24% Similarity=0.394 Sum_probs=61.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE-E-CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 258848998188888889999998303876767999642131256787567787-4-16666530001899998752059
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET-R-PPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~-~-~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
T Consensus 486 rPigsFlf~GPTGVGKTElak~LA~~L--~~~lir~-DMSEy~e~h--svsrLiGaPPGYV----Gy~eGG~Lte~Vr~~ 556 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRF-DMSEYMERH--TVSRLIGAPPGYV----GFDQGGLLTDAVIKH 556 (758)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH--HHHHHCC-CHHHHCCHH--HHHHHCCCCCCCC----CCCCCCCCCHHHHHC
T ss_conf 970589997899877799999999998--6677214-266531201--4777448998666----767777012878739
Q ss_pred CC-EEEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf 98-89965758--7999999-999873970
Q gi|254780724|r 326 PE-RIILGEVR--GPEVLDL-LQAMNTGHD 351 (483)
Q Consensus 326 PD-~IiVGEiR--g~Ea~~~-l~A~~TGH~ 351 (483)
T Consensus 557 PysVvL~DEIEKAhpdV~nilLQvlD~G~L 586 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTL 586 (758)
T ss_pred CCEEEEEHHHHHHCHHHHHHHHHHCCCCCC
T ss_conf 877997336756398999988732377830