HHsearch alignment for GI: 254780724 and conserved domain: PRK11034

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=96.95  E-value=0.001  Score=44.53  Aligned_cols=95  Identities=24%  Similarity=0.394  Sum_probs=61.4

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE-E-CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             258848998188888889999998303876767999642131256787567787-4-16666530001899998752059
Q gi|254780724|r  248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET-R-PPNIEGEGEITMRDLVKNCLRMR  325 (483)
Q Consensus       248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~-~-~~~~e~~~~~t~~~ll~~aLR~~  325 (483)
T Consensus       486 rPigsFlf~GPTGVGKTElak~LA~~L--~~~lir~-DMSEy~e~h--svsrLiGaPPGYV----Gy~eGG~Lte~Vr~~  556 (758)
T PRK11034        486 KPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRF-DMSEYMERH--TVSRLIGAPPGYV----GFDQGGLLTDAVIKH  556 (758)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH--HHHHHCC-CHHHHCCHH--HHHHHCCCCCCCC----CCCCCCCCCHHHHHC
T ss_conf             970589997899877799999999998--6677214-266531201--4777448998666----767777012878739


Q ss_pred             CC-EEEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf             98-89965758--7999999-999873970
Q gi|254780724|r  326 PE-RIILGEVR--GPEVLDL-LQAMNTGHD  351 (483)
Q Consensus       326 PD-~IiVGEiR--g~Ea~~~-l~A~~TGH~  351 (483)
T Consensus       557 PysVvL~DEIEKAhpdV~nilLQvlD~G~L  586 (758)
T PRK11034        557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTL  586 (758)
T ss_pred             CCEEEEEHHHHHHCHHHHHHHHHHCCCCCC
T ss_conf             877997336756398999988732377830