HHsearch alignment for GI: 254780724 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=97.27 E-value=0.005 Score=39.76 Aligned_cols=152 Identities=19% Similarity=0.312 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHHH--------CCCCCCEEEEEEECCCC
Q ss_conf 89999989862258848998188888889999998303876767999--642131--------25678756778741666
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAEL--------QLQQPHVVRLETRPPNI 306 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~El--------~l~~~~~v~~~~~~~~~ 306 (483)
T Consensus 77 ~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~~vLYvSGEES~~Qik~RA~RLg~~~~~l-~l------- 148 (454)
T PRK11823 77 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGGKVLYVSGEESLQQIKLRAERLGLPSDNL-YL------- 148 (454)
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCC-EE-------
T ss_conf 5665221587206648995079988899999999999855995799815015789999999758888873-78-------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 65300018999987520599889965758799999999987397010200047888889999997553046799989999
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~ 386 (483)
T Consensus 149 --~~et~l~~Il~~i~~~~P~~lIIDSIQT-----~~~~~~~s~pGsvsQV-----re~a~~L~~~AK~~~--i~----- 209 (454)
T PRK11823 149 --LAETNLEDILATIEEEKPDLVVIDSIQT-----MYSPELESAPGSVSQV-----RECAAELTRLAKQSG--IA----- 209 (454)
T ss_pred --EECCCHHHHHHHHHHHCCCEEEEECHHE-----EEECCCCCCCCCHHHH-----HHHHHHHHHHHHHCC--CC-----
T ss_conf --8536899999999860998899943111-----5415667789978999-----999999999997449--82-----
Q ss_pred HHHHHHCCEEEEEEECCC--CCEEEEEEEEEE-EEECC
Q ss_conf 999742358899987699--987899999998-41498
Q gi|254780724|r 387 EIITSSLDVIVQTQRLRD--GSRRITNICEIV-GMEGN 421 (483)
Q Consensus 387 ~~ia~avd~iV~~~r~~d--G~Rrv~~I~Ev~-g~e~~ 421 (483)
T Consensus 210 ------~~lVGHVTKdG~iAGPkvLEHmVDtVl~fEGd 241 (454)
T PRK11823 210 ------VFLVGHVTKEGAIAGPRVLEHMVDTVLYFEGD 241 (454)
T ss_pred ------EEEEEEECCCCCCCCCHHHHHHHCEEEEECCC
T ss_conf ------89999772677646614522201046875157