HHsearch alignment for GI: 254780724 and conserved domain: PRK12377

Probab=95.68  E-value=0.03  Score=34.33  Aligned_cols=93  Identities=15%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             98986225884899818888888999999830-38767679996421312567875677874166665300018999987
Q gi|254780724|r  242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKN  320 (483)
Q Consensus       242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~  320 (483)
T Consensus        93 ~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sV-lF~t~~dLv~~L~--------~a~~~g~---~~~k~l~~  160 (248)
T PRK12377         93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLH--------ESYDNGQ---SGEKFLQE  160 (248)
T ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EEEEHHHHHHHHH--------HHHHCCC---CHHHHHHH
T ss_conf             9998731886089989999878899999999999879969-9988999999999--------9998485---09999999


Q ss_pred             HHHCCCCEEEECCCC---CH--HHHHHHHHHHC
Q ss_conf             520599889965758---79--99999999873
Q gi|254780724|r  321 CLRMRPERIILGEVR---GP--EVLDLLQAMNT  348 (483)
Q Consensus       321 aLR~~PD~IiVGEiR---g~--Ea~~~l~A~~T  348 (483)
T Consensus       161 l~--~~dLLIIDElG~~~~s~~~~~llfqlI~~  191 (248)
T PRK12377        161 LC--KVDLLVLDEIGIQRETKNEQVVLNQIIDR  191 (248)
T ss_pred             HH--CCCEEEEHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             73--38989860005788986799999999999