HHsearch alignment for GI: 254780724 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=100.00 E-value=0 Score=572.96 Aligned_cols=292 Identities=26% Similarity=0.416 Sum_probs=268.6
Q ss_pred HCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 56563358858833217998569918998278389717620798999999999999809812433877879823762034
Q gi|254780724|r 122 LGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVN 201 (483)
Q Consensus 122 ~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~ 201 (483)
T Consensus 9 ~~L~PL~~~L~Dp~VtEI~IN~p~~V~ve~~g~~~~~~~~l-~~~~~~~ia~~~a~~~~~~i~~~~Pil~a~LpdG~Rv~ 87 (343)
T PRK13851 9 FLLKPVLEWLDDPRTEEVAINRPGEAFVRQAGVFTKFPLPL-SYDDLEDIAILAGALRKQDVGPRNPLCATELPGGERLQ 87 (343)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEEECCCC-CHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 74343699864999779998689979999699379937877-99999999999988626875767864788869997899
Q ss_pred EECCCCCCCCC-EEEEEECCCCCCCHHHHHHCC-------------------------CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 53155357881-688840576546678886506-------------------------9988999998986225884899
Q gi|254780724|r 202 VIIPPLALDGP-TLTIRKFKKDKLTLDHLVSFG-------------------------AVTAEGARLLQIIGRIRCNVLI 255 (483)
Q Consensus 202 ~~~~p~s~~G~-~i~IRk~~~~~~~l~~l~~~g-------------------------~~~~~~~~~l~~~v~~~~nilV 255 (483)
T Consensus 88 ~v~pP~~~~g~~sitIRkps~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~fL~~aV~~r~NIlI 167 (343)
T PRK13851 88 ICLPPTVPSGTVSLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQQDEAILRHYDNGDLEAFLHACVVGRLTMLL 167 (343)
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 98088446897069996664555657775420121111100001234432567877502437799999999976988999
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 81888888899999983038767679996421312567875677874166665300018999987520599889965758
Q gi|254780724|r 256 SGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 256 sG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
T Consensus 168 sGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~l~~~~-~~~g~~~vt~~~Ll~~aLRmrPDRIivGEvR 246 (343)
T PRK13851 168 CGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSK-NGAGLGAVTAEHLLQASLRMRPDRILLGEMR 246 (343)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 888986199999999962896552799611500258999968999658-9888583979999999860799828998526
Q ss_pred CHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEE
Q ss_conf 79999999998739701020004788888999999755304--6799989999999742358899987699987899999
Q gi|254780724|r 336 GPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMG--GFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNIC 413 (483)
Q Consensus 336 g~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~--~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~ 413 (483)
T Consensus 247 G~EA~d~L~A~nTGH~GsitTiHAnSa~~a~~RL~~l~~~s~~g~~l~~~~i~~~i~~~IDvVV~~~r~~~-~R~v~EI~ 325 (343)
T PRK13851 247 DDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSPQGASLEDRTLIDMLATAIDVIIPFRAYGD-VYEVGEIW 325 (343)
T ss_pred CHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC-CEEEEEEE
T ss_conf 69999999998469998303356799999999999998735247999999999999985999999997189-25999999
Q ss_pred EEE
Q ss_conf 998
Q gi|254780724|r 414 EIV 416 (483)
Q Consensus 414 Ev~ 416 (483)
T Consensus 326 ~~~ 328 (343)
T PRK13851 326 LAA 328 (343)
T ss_pred ECC
T ss_conf 677