HHsearch alignment for GI: 254780724 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=96.99 E-value=0.00058 Score=46.29 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=40.1
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHCCC--CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 53578816888405765466788865069--9889999989862258848998188888889999998303
Q gi|254780724|r 206 PLALDGPTLTIRKFKKDKLTLDHLVSFGA--VTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 206 p~s~~G~~i~IRk~~~~~~~l~~l~~~g~--~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i 274 (483)
T Consensus 107 e~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nve-lehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~L 176 (452)
T TIGR00382 107 EQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVE-LEHLEEVELSKSNILLIGPTGSGKTLLAQTLARIL 176 (452)
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 01052543241124666532430455588400023-54444433300662454688852689999999873