HHsearch alignment for GI: 254780724 and conserved domain: TIGR00618

>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=97.14  E-value=0.00031  Score=48.21  Aligned_cols=28  Identities=36%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             5884899818888888999999830387
Q gi|254780724|r  249 IRCNVLISGGTGSGKTTLLNCLTRYIDK  276 (483)
Q Consensus       249 ~~~nilVsG~TGSGKTT~L~al~~~i~~  276 (483)
T Consensus        29 sl~~f~i~G~tGAGKtsLldAI~yALYG   56 (1063)
T TIGR00618        29 SLKLFVICGKTGAGKTSLLDAITYALYG   56 (1063)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             2573677788998354599999998728