HHsearch alignment for GI: 254780724 and conserved domain: TIGR02204
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.21 E-value=0.013 Score=36.79 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCEEEEECCCCEEEEE--CCEEE----ECCCCCCCHHHHHHHHHHH----------HHHHCCCCCCCCCEEEEEECCCCE
Q ss_conf 2179985699189982--78389----7176207989999999999----------998098124338778798237620
Q gi|254780724|r 136 IADIMVNGSNKVFIEV--NGKTV----ETGINFRDNEQLLSVCQRI----------VNQVGRRVDESSPICDARLLDGSR 199 (483)
Q Consensus 136 VsdI~ing~~~I~ve~--~G~~~----~~~~~f~~~~~l~~~i~rl----------a~~~g~~i~~~~P~~d~~lpdg~R 199 (483)
T Consensus 256 iv~vLW~Ga~DV~aG~mSaG~Lg~Fv~YA~~vAgs~g~LSEVwGElQrAaGAaERl~ELL~~~~dI~aP~~P~~lP~p~~ 335 (576)
T TIGR02204 256 IVGVLWVGAHDVLAGKMSAGELGQFVLYAVMVAGSIGALSEVWGELQRAAGAAERLIELLQAKPDIKAPAQPKTLPVPVR 335 (576)
T ss_pred HHHHHHHCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999834131224777845489999999999988989999999999853168999998535777788698887898864
Q ss_pred EEEECCCCCCCCCEEEEEEC-CCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 34531553578816888405-76546678886506998899999898622588489981888888899999983038767
Q gi|254780724|r 200 VNVIIPPLALDGPTLTIRKF-KKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE 278 (483)
Q Consensus 200 i~~~~~p~s~~G~~i~IRk~-~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ 278 (483)
T Consensus 336 Gei~F~-------~V~F~YP~RPd~~aL~~--------------~~L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~~ 394 (576)
T TIGR02204 336 GEIEFE-------QVNFAYPARPDQPALDG--------------LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred EEEEEC-------CCCCCCCCCCCCHHHCC--------------CCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 027761-------22325879888042325--------------772562776588766887627999999986048887
Q ss_pred CEEEE-------ECCHHHC
Q ss_conf 67999-------6421312
Q gi|254780724|r 279 RIVTC-------EDTAELQ 290 (483)
Q Consensus 279 rivtI-------ED~~El~ 290 (483)
T Consensus 395 G~ilLDGvd~r~~dP~~lR 413 (576)
T TIGR02204 395 GRILLDGVDIRDLDPADLR 413 (576)
T ss_pred CEEEECCCCHHHCCCHHHH
T ss_conf 6577466414016808788