HHsearch alignment for GI: 254780724 and conserved domain: TIGR02782

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=100.00  E-value=0  Score=530.01  Aligned_cols=291  Identities=37%  Similarity=0.575  Sum_probs=264.2

Q ss_pred             CCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-C--CCEEEE
Q ss_conf             3358858833217998569918998278389717620798999999999999809812433877879823-7--620345
Q gi|254780724|r  126 PLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLL-D--GSRVNV  202 (483)
Q Consensus       126 pL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lp-d--g~Ri~~  202 (483)
T Consensus        13 ~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPldflGsRFeG   92 (315)
T TIGR02782        13 EIAAALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLDFLGSRFEG   92 (315)
T ss_pred             HHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCHHHCCCCC
T ss_conf             99997379883899866987010500679730016611789999999999876446043578626610751112011004


Q ss_pred             ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCC
Q ss_conf             315535788168884057654667888650699889999989862258848998188888889999998303----8767
Q gi|254780724|r  203 IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI----DKDE  278 (483)
Q Consensus       203 ~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i----~~~~  278 (483)
T Consensus        93 l~PPVV-~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P~d  171 (315)
T TIGR02782        93 LLPPVV-EAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLAEIAKLNDPDD  171 (315)
T ss_pred             CCCCCC-CCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             687755-6551011102241047077764044557899999999971298899814588579999999998852169996


Q ss_pred             CEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHC
Q ss_conf             67999642131256787567787416666530001899998752059988996575879999999998739701020004
Q gi|254780724|r  279 RIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIH  358 (483)
Q Consensus       279 rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlH  358 (483)
T Consensus       172 R~vIiEDT~ElQC~A~N~V~lrT~d-----~~Gi~M~~LLk~TLRlRPDRI~VGEVRg~eAL~LLKAWNTGHPGGi~TiH  246 (315)
T TIGR02782       172 RVVIIEDTAELQCAAENLVALRTSD-----DVGISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIH  246 (315)
T ss_pred             EEEEEECCHHHHHCCCCEEEEECCC-----CCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             1899854713201378706874489-----86614788888750058873356301438999998640589953020331


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECC--CCCEEEEEEEEEEEEEC--CEEE
Q ss_conf             788888999999755304679998999999974235889998769--99878999999984149--8899
Q gi|254780724|r  359 ANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLR--DGSRRITNICEIVGMEG--NVII  424 (483)
Q Consensus       359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~--dG~Rrv~~I~Ev~g~e~--~~~~  424 (483)
T Consensus       247 An~a~~aL~RLeQLi~E~s~~~--kP~~~lI~eavd~v~~I~rdPn~~~GRrv~ei~~V~g~~~atG~Y~  314 (315)
T TIGR02782       247 ANNAKAALRRLEQLIAEVSVSP--KPMQELIAEAVDLVVFIERDPNTGEGRRVQEIIKVKGFDDATGRYI  314 (315)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             4886689999999998535899--7205778754102665313787986651212120137764654447