HHsearch alignment for GI: 254780724 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=100.00 E-value=0 Score=530.01 Aligned_cols=291 Identities=37% Similarity=0.575 Sum_probs=264.2
Q ss_pred CCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-C--CCEEEE
Q ss_conf 3358858833217998569918998278389717620798999999999999809812433877879823-7--620345
Q gi|254780724|r 126 PLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLL-D--GSRVNV 202 (483)
Q Consensus 126 pL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lp-d--g~Ri~~ 202 (483)
T Consensus 13 ~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPldflGsRFeG 92 (315)
T TIGR02782 13 EIAAALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLDFLGSRFEG 92 (315)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCHHHCCCCC
T ss_conf 99997379883899866987010500679730016611789999999999876446043578626610751112011004
Q ss_pred ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCC
Q ss_conf 315535788168884057654667888650699889999989862258848998188888889999998303----8767
Q gi|254780724|r 203 IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI----DKDE 278 (483)
Q Consensus 203 ~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i----~~~~ 278 (483)
T Consensus 93 l~PPVV-~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P~d 171 (315)
T TIGR02782 93 LLPPVV-EAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLAEIAKLNDPDD 171 (315)
T ss_pred CCCCCC-CCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 687755-6551011102241047077764044557899999999971298899814588579999999998852169996
Q ss_pred CEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHC
Q ss_conf 67999642131256787567787416666530001899998752059988996575879999999998739701020004
Q gi|254780724|r 279 RIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIH 358 (483)
Q Consensus 279 rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlH 358 (483)
T Consensus 172 R~vIiEDT~ElQC~A~N~V~lrT~d-----~~Gi~M~~LLk~TLRlRPDRI~VGEVRg~eAL~LLKAWNTGHPGGi~TiH 246 (315)
T TIGR02782 172 RVVIIEDTAELQCAAENLVALRTSD-----DVGISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIH 246 (315)
T ss_pred EEEEEECCHHHHHCCCCEEEEECCC-----CCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 1899854713201378706874489-----86614788888750058873356301438999998640589953020331
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECC--CCCEEEEEEEEEEEEEC--CEEE
Q ss_conf 788888999999755304679998999999974235889998769--99878999999984149--8899
Q gi|254780724|r 359 ANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLR--DGSRRITNICEIVGMEG--NVII 424 (483)
Q Consensus 359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~--dG~Rrv~~I~Ev~g~e~--~~~~ 424 (483)
T Consensus 247 An~a~~aL~RLeQLi~E~s~~~--kP~~~lI~eavd~v~~I~rdPn~~~GRrv~ei~~V~g~~~atG~Y~ 314 (315)
T TIGR02782 247 ANNAKAALRRLEQLIAEVSVSP--KPMQELIAEAVDLVVFIERDPNTGEGRRVQEIIKVKGFDDATGRYI 314 (315)
T ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 4886689999999998535899--7205778754102665313787986651212120137764654447