HHsearch alignment for GI: 254780724 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

Probab=97.63  E-value=0.00011  Score=51.33  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=66.3

Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE-E-CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             2258848998188888889999998303876767999642131256787567787-4-1666653000189999875205
Q gi|254780724|r  247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET-R-PPNIEGEGEITMRDLVKNCLRM  324 (483)
Q Consensus       247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~-~-~~~~e~~~~~t~~~ll~~aLR~  324 (483)
T Consensus       593 ~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs--vsrLiGaPPGYV----Gy~eGG~LTe~Vrr  666 (852)
T TIGR03345       593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT--VSRLKGSPPGYV----GYGEGGVLTEAVRR  666 (852)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHH--HHHHCCCCCCCC----CCCCCCHHHHHHHH
T ss_conf             998568998789987789999999999719861147842243210436--878638999766----74877721098880


Q ss_pred             CC-CEEEECCCC--CHHHHH-HHHHHHCCC
Q ss_conf             99-889965758--799999-999987397
Q gi|254780724|r  325 RP-ERIILGEVR--GPEVLD-LLQAMNTGH  350 (483)
Q Consensus       325 ~P-D~IiVGEiR--g~Ea~~-~l~A~~TGH  350 (483)
T Consensus       667 ~PysVvLfDEIEKAHpdV~nilLQvlD~G~  696 (852)
T TIGR03345       667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGV  696 (852)
T ss_pred             CCCEEEEECHHHHCCHHHHHHHHHHHCCCE
T ss_conf             998688861130028899999998724677