HHsearch alignment for GI: 254780724 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.45 E-value=0.0049 Score=39.82 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHH-HHHCCCC-CEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEE--ECCHHHC-----
Q ss_conf 654667888650699889999989-8622588-4899818888888999999830387-6767999--6421312-----
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQ-IIGRIRC-NVLISGGTGSGKTTLLNCLTRYIDK-DERIVTC--EDTAELQ----- 290 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~-~~v~~~~-nilVsG~TGSGKTT~L~al~~~i~~-~~rivtI--ED~~El~----- 290 (483)
T Consensus 9 ~~~~tfdnFi~~-~-N~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~l~ 86 (226)
T TIGR03420 9 PDDPTFDNFYAG-G-NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLE 86 (226)
T ss_pred CCCCCHHCCCCC-C-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 998763123658-6-79999999987646688869998999998899999999998626995799529998775399997
Q ss_pred -CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-----HHHHHHHCCCCEEEHHHCCCCH
Q ss_conf -5678756778741666653--0001899998752059988996575879999-----9999987397010200047888
Q gi|254780724|r 291 -LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVL-----DLLQAMNTGHDGSMGTIHANNA 362 (483)
Q Consensus 291 -l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-----~~l~A~~TGH~G~ltTlHa~s~ 362 (483)
T Consensus 87 ~l~~~d~l~iD-Di~~i~~~~~~e~~lF~l~N~-~~~~~~~ilits~~~p~~l~~~l~dL~SRl~~~---~~~~I~~pdd 161 (226)
T TIGR03420 87 GLEQADLVCLD-DVEAIAGQPEWQEALFHLYNR-VREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG---LVFQLPPLSD 161 (226)
T ss_pred HCCCCCEEEEE-CHHHHCCCHHHHHHHHHHHHH-HHHHCCEEEEECCCCHHHCCCCHHHHHHHHHCC---CEEECCCCCH
T ss_conf 27448999996-633343783789999999999-986528289867888232032017799999688---5685279999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8899999975530467999899999
Q gi|254780724|r 363 RESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 363 ~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
T Consensus 162 ~~~~~iL~k~~~~r~i~i~~~vi~y 186 (226)
T TIGR03420 162 EEKIAALQSRAARRGLQLPDEVADY 186 (226)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999999998599889999999