HHsearch alignment for GI: 254780724 and conserved domain: TIGR03522
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.37 E-value=0.0054 Score=39.56 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=66.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC------CHHHC-----CCCCCEEE-EEEECCCC-----
Q ss_conf 986225884899818888888999999830387676799964------21312-----56787567-78741666-----
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED------TAELQ-----LQQPHVVR-LETRPPNI----- 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED------~~El~-----l~~~~~v~-~~~~~~~~----- 306 (483)
T Consensus 22 sf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~ 101 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG 101 (301)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 67885981999999999819999999967956897779992751344879998537674555656788899999999999
Q ss_pred -C------------------------------CCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHH----HHHHHHHHHC
Q ss_conf -6------------------------------530001899998752059988996575-8--799----9999999873
Q gi|254780724|r 307 -E------------------------------GEGEITMRDLVKNCLRMRPERIILGEV-R--GPE----VLDLLQAMNT 348 (483)
Q Consensus 307 -e------------------------------~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~E----a~~~l~A~~T 348 (483)
T Consensus 102 ~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 181 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 73999899999999999881885665482767799884459988987079989999488667898999999999998759
Q ss_pred CCCEEEHHHCC
Q ss_conf 97010200047
Q gi|254780724|r 349 GHDGSMGTIHA 359 (483)
Q Consensus 349 GH~G~ltTlHa 359 (483)
T Consensus 182 ~~T-illssH~ 191 (301)
T TIGR03522 182 DKT-IILSTHI 191 (301)
T ss_pred CCE-EEEECCC
T ss_conf 999-9998785