HHsearch alignment for GI: 254780724 and conserved domain: TIGR03522

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.37  E-value=0.0054  Score=39.56  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC------CHHHC-----CCCCCEEE-EEEECCCC-----
Q ss_conf             986225884899818888888999999830387676799964------21312-----56787567-78741666-----
Q gi|254780724|r  244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED------TAELQ-----LQQPHVVR-LETRPPNI-----  306 (483)
Q Consensus       244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED------~~El~-----l~~~~~v~-~~~~~~~~-----  306 (483)
T Consensus        22 sf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~  101 (301)
T TIGR03522        22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG  101 (301)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             67885981999999999819999999967956897779992751344879998537674555656788899999999999


Q ss_pred             -C------------------------------CCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHH----HHHHHHHHHC
Q ss_conf             -6------------------------------530001899998752059988996575-8--799----9999999873
Q gi|254780724|r  307 -E------------------------------GEGEITMRDLVKNCLRMRPERIILGEV-R--GPE----VLDLLQAMNT  348 (483)
Q Consensus       307 -e------------------------------~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~E----a~~~l~A~~T  348 (483)
T Consensus       102 ~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~  181 (301)
T TIGR03522       102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK  181 (301)
T ss_pred             HCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             73999899999999999881885665482767799884459988987079989999488667898999999999998759


Q ss_pred             CCCEEEHHHCC
Q ss_conf             97010200047
Q gi|254780724|r  349 GHDGSMGTIHA  359 (483)
Q Consensus       349 GH~G~ltTlHa  359 (483)
T Consensus       182 ~~T-illssH~  191 (301)
T TIGR03522       182 DKT-IILSTHI  191 (301)
T ss_pred             CCE-EEEECCC
T ss_conf             999-9998785