HHsearch alignment for GI: 254780724 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.16  E-value=0.0064  Score=39.00  Aligned_cols=41  Identities=32%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             CCEEEECCCCCCHHHHH-HHHHHHCC--CCCCEEEEECCHHHCC
Q ss_conf             84899818888888999-99983038--7676799964213125
Q gi|254780724|r  251 CNVLISGGTGSGKTTLL-NCLTRYID--KDERIVTCEDTAELQL  291 (483)
Q Consensus       251 ~nilVsG~TGSGKTT~L-~al~~~i~--~~~rivtIED~~El~l  291 (483)
T Consensus         1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~   44 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELAN   44 (144)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             99999889971799999999999997568976999746799999