HHsearch alignment for GI: 254780724 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.40 E-value=0.17 Score=29.00 Aligned_cols=108 Identities=13% Similarity=0.028 Sum_probs=60.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCC----CEEEEEEECCCCC------CCCCCHHHHHHH
Q ss_conf 884899818888888999999830387676799964213125678----7567787416666------530001899998
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQP----HVVRLETRPPNIE------GEGEITMRDLVK 319 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~----~~v~~~~~~~~~e------~~~~~t~~~ll~ 319 (483)
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~ia 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--FDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 74999868998988999999998476756884185898867631368754223--4877663541569999999999999
Q ss_pred HHHHCCCCEEEECCCCCHHH-HHHHHHHHCCCCEEEHHHCCC
Q ss_conf 75205998899657587999-999999873970102000478
Q gi|254780724|r 320 NCLRMRPERIILGEVRGPEV-LDLLQAMNTGHDGSMGTIHAN 360 (483)
Q Consensus 320 ~aLR~~PD~IiVGEiRg~Ea-~~~l~A~~TGH~G~ltTlHa~ 360 (483)
T Consensus 80 a~a~aG~nvIvD~v~~~~~~l~d~~~-~L~g~~v~~VGV~C~ 120 (175)
T cd00227 80 AMARAGANVIADDVFLGRAALQDCWR-SFVGLDVLWVGVRCP 120 (175)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHH-HHCCCCEEEEEEECC
T ss_conf 99977998898631238088999999-857992799998789