HHsearch alignment for GI: 254780724 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34  E-value=0.0025  Score=41.92  Aligned_cols=38  Identities=37%  Similarity=0.476  Sum_probs=27.8

Q ss_pred             CEEEECCCCCCHHHHHHH-HHHHCCCCCCEE--EEECCHHH
Q ss_conf             489981888888899999-983038767679--99642131
Q gi|254780724|r  252 NVLISGGTGSGKTTLLNC-LTRYIDKDERIV--TCEDTAEL  289 (483)
Q Consensus       252 nilVsG~TGSGKTT~L~a-l~~~i~~~~riv--tIED~~El  289 (483)
T Consensus         1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~   41 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEE   41 (187)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf             91587689999999999999999876997899995079999