HHsearch alignment for GI: 254780724 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0025 Score=41.92 Aligned_cols=38 Identities=37% Similarity=0.476 Sum_probs=27.8
Q ss_pred CEEEECCCCCCHHHHHHH-HHHHCCCCCCEE--EEECCHHH
Q ss_conf 489981888888899999-983038767679--99642131
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNC-LTRYIDKDERIV--TCEDTAEL 289 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~a-l~~~i~~~~riv--tIED~~El 289 (483)
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~ 41 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEE 41 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 91587689999999999999999876997899995079999