HHsearch alignment for GI: 254780724 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.

Probab=96.54  E-value=0.0029  Score=41.42  Aligned_cols=26  Identities=15%  Similarity=-0.033  Sum_probs=12.9

Q ss_pred             CCCEEEECCCCCH---HHHHHHHHHHCCC
Q ss_conf             9988996575879---9999999987397
Q gi|254780724|r  325 RPERIILGEVRGP---EVLDLLQAMNTGH  350 (483)
Q Consensus       325 ~PD~IiVGEiRg~---Ea~~~l~A~~TGH  350 (483)
T Consensus       270 ~rv~~~lDE~~~l~~l~~~~~~l~~~R~~  298 (410)
T cd01127         270 RRLWFFIDELPSLHKLPDLVDALAEGRKF  298 (410)
T ss_pred             CCEEEEEECHHCCCCCHHHHHHHHHHHHC
T ss_conf             60799988700037717799999988517