HHsearch alignment for GI: 254780724 and conserved domain: cd01129

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=100.00  E-value=7.7e-35  Score=262.03  Aligned_cols=207  Identities=24%  Similarity=0.373  Sum_probs=163.2

Q ss_pred             HHHHHCCCCCCCCCEEEEEEC---CCCEEEE--ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             999809812433877879823---7620345--31553578816888405765466788865069988999998986225
Q gi|254780724|r  175 IVNQVGRRVDESSPICDARLL---DGSRVNV--IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRI  249 (483)
Q Consensus       175 la~~~g~~i~~~~P~~d~~lp---dg~Ri~~--~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~  249 (483)
T Consensus         2 iK~~a~ldi~e~r~pQdG~~~~~~~~~~~~~Rvst~p-~~~Ge~vvlRll~~~~-~~~~L~~LG~~~~~~~~l~~~~~~~   79 (264)
T cd01129           2 LKILAALDIAERRKPQDGRIRLKLKGREIDLRVSTLP-TIYGESVVLRILDKKN-QILDLEKLGLKPENLEIFRKLLEKP   79 (264)
T ss_pred             EEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECC-CCCCCEEEEEEECCCC-CCCCHHHHCCCHHHHHHHHHHHHCC
T ss_conf             4687799861335884881899989989999999475-7999769999757766-6579879579999999999997089


Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf             884899818888888999999830387-6767999642131256787567787416666530001899998752059988
Q gi|254780724|r  250 RCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPER  328 (483)
Q Consensus       250 ~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~  328 (483)
T Consensus        80 ~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdPvE~~~~~~~Q~~v-------~~~~g~~~~~~lr~~LR~dPDv  152 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQV-------NEKAGLTFARGLRAILRQDPDI  152 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEE-------CCCCCCCHHHHHHHHHCCCCCE
T ss_conf             988999789999779999999986436885089986763145688735761-------6666878999999985569998


Q ss_pred             EEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf             996575879999-9999987397010200047888889999997553046799989999999742358899987
Q gi|254780724|r  329 IILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQR  401 (483)
Q Consensus       329 IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r  401 (483)
T Consensus       153 i~igEiRD~eta~~a~~aa~tGhl-V~tTlHa~~a~~~i~RL~~l------gv~~~~----l~~~l~~vi~QRL  215 (264)
T cd01129         153 IMVGEIRDAETAEIAVQAALTGHL-VLSTLHTNDAPGAITRLLDM------GIESYL----LSSALIGVIAQRL  215 (264)
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCE-EEEEECCCCHHHHHHHHHHC------CCCHHH----HHHHHHHHHHHHH
T ss_conf             874688999999999999970996-99997039999999999982------999899----9999999998642