HHsearch alignment for GI: 254780724 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=100.00 E-value=0 Score=375.37 Aligned_cols=183 Identities=57% Similarity=0.832 Sum_probs=173.5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCC
Q ss_conf 78886506998899999898622588489981888888899999983038767679996421312567875677874166
Q gi|254780724|r 226 LDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPN 305 (483)
Q Consensus 226 l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~ 305 (483)
T Consensus 1 lddlv~~G~~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~ 80 (186)
T cd01130 1 LDDLIAQGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGN 80 (186)
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEEEEEECCC
T ss_conf 96788669999999999999998599899989999989999999996133456459841535404777756888860464
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 66530001899998752059988996575879999999998739701020004788888999999755304679998999
Q gi|254780724|r 306 IEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMV 385 (483)
Q Consensus 306 ~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~ 385 (483)
T Consensus 81 ~~~~~~~~~~~li~~aLR~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~--~~~~~~ 158 (186)
T cd01130 81 VEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVP--LGRPLL 158 (186)
T ss_pred CCCCCEECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCHHHH
T ss_conf 578650349999887366899737317568399999999997489860303158999999999998875479--999999
Q ss_pred HHHHHHHCCEEEEEEECC--CCCEEEE
Q ss_conf 999974235889998769--9987899
Q gi|254780724|r 386 REIITSSLDVIVQTQRLR--DGSRRIT 410 (483)
Q Consensus 386 ~~~ia~avd~iV~~~r~~--dG~Rrv~ 410 (483)
T Consensus 159 ~~~ia~~id~vV~~~~~~~~~~~~~v~ 185 (186)
T cd01130 159 REQIKEAIDVIVHIARLKGRRGIRRVT 185 (186)
T ss_pred HHHHHHHCCEEEEEEEECCCCCCEEEC
T ss_conf 999997577999998876999866738