HHsearch alignment for GI: 254780724 and conserved domain: cd03112
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.24 E-value=0.00095 Score=44.82 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=48.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-CCHHHCCCCCCE----EEEEEECC-----CCCCCCCCHHHHHHHHHH
Q ss_conf 89981888888899999983038767679996-421312567875----67787416-----666530001899998752
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCE-DTAELQLQQPHV----VRLETRPP-----NIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i~~~~rivtIE-D~~El~l~~~~~----v~~~~~~~-----~~e~~~~~t~~~ll~~aL 322 (483)
T Consensus 3 ~iitGFLGaGKTTll~~lL~~~-~~~~~avIvNEfG~~~ID~~ll~~~~~~v~el~~GCiCCs~~~dl~~~l~~l~~~~~ 81 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ-HGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEECCCCCHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8998488899999999998478-899779997076554631667637882499933871465225158999999999765
Q ss_pred --HCCCCEEEECCCCCH-HHHHHHHH
Q ss_conf --059988996575879-99999999
Q gi|254780724|r 323 --RMRPERIILGEVRGP-EVLDLLQA 345 (483)
Q Consensus 323 --R~~PD~IiVGEiRg~-Ea~~~l~A 345 (483)
T Consensus 82 ~~~~~~d~iiI-E~SGla~P~~i~~~ 106 (158)
T cd03112 82 AGKIAFDRIVI-ETTGLADPGPVAQT 106 (158)
T ss_pred CCCCCCCEEEE-ECCCCCCCHHHHHH
T ss_conf 15788788999-63687882899998