HHsearch alignment for GI: 254780724 and conserved domain: cd03112

>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.24  E-value=0.00095  Score=44.82  Aligned_cols=91  Identities=23%  Similarity=0.329  Sum_probs=48.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-CCHHHCCCCCCE----EEEEEECC-----CCCCCCCCHHHHHHHHHH
Q ss_conf             89981888888899999983038767679996-421312567875----67787416-----666530001899998752
Q gi|254780724|r  253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCE-DTAELQLQQPHV----VRLETRPP-----NIEGEGEITMRDLVKNCL  322 (483)
Q Consensus       253 ilVsG~TGSGKTT~L~al~~~i~~~~rivtIE-D~~El~l~~~~~----v~~~~~~~-----~~e~~~~~t~~~ll~~aL  322 (483)
T Consensus         3 ~iitGFLGaGKTTll~~lL~~~-~~~~~avIvNEfG~~~ID~~ll~~~~~~v~el~~GCiCCs~~~dl~~~l~~l~~~~~   81 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTEQ-HGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD   81 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             8998488899999999998478-899779997076554631667637882499933871465225158999999999765


Q ss_pred             --HCCCCEEEECCCCCH-HHHHHHHH
Q ss_conf             --059988996575879-99999999
Q gi|254780724|r  323 --RMRPERIILGEVRGP-EVLDLLQA  345 (483)
Q Consensus       323 --R~~PD~IiVGEiRg~-Ea~~~l~A  345 (483)
T Consensus        82 ~~~~~~d~iiI-E~SGla~P~~i~~~  106 (158)
T cd03112          82 AGKIAFDRIVI-ETTGLADPGPVAQT  106 (158)
T ss_pred             CCCCCCCEEEE-ECCCCCCCHHHHHH
T ss_conf             15788788999-63687882899998