HHsearch alignment for GI: 254780724 and conserved domain: cd03215
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.68 E-value=0.0016 Score=43.20 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=63.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC-HHHCCCC---CCEEEEEEE-------------CCCC
Q ss_conf 9862258848998188888889999998303876767999642-1312567---875677874-------------1666
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT-AELQLQQ---PHVVRLETR-------------PPNI 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~-~El~l~~---~~~v~~~~~-------------~~~~ 306 (483)
T Consensus 20 sl~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~ 99 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHH
T ss_conf 78985996999988899992637787669867887759999999886499999978969960207662567899099995
Q ss_pred C----CCCCCHHHHHHHHHHHCCCCEEEECCCC---CHHH----HHHHH-HHHCCCCEEEHHHCC
Q ss_conf 6----5300018999987520599889965758---7999----99999-987397010200047
Q gi|254780724|r 307 E----GEGEITMRDLVKNCLRMRPERIILGEVR---GPEV----LDLLQ-AMNTGHDGSMGTIHA 359 (483)
Q Consensus 307 e----~~~~~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea----~~~l~-A~~TGH~G~ltTlHa 359 (483)
T Consensus 100 ~~~~~LSGG~~Qrv~lAral~~~p~llllDEPT~gLD~~~~~~i~~~i~~l~~~g~t-vi~isHd 163 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA-VLLISSE 163 (182)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 185579989999999999997199999986875458999999999999999978999-9999687