HHsearch alignment for GI: 254780724 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.96 E-value=0.0012 Score=44.11 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 20 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~G 61 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 899889989999999998599999999779889960999999