HHsearch alignment for GI: 254780724 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.0036 Score=40.77 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=55.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEE---CCHHHCCCCCCEEEEEEECCCCCC----CCCCH-
Q ss_conf 9862258848998188888889999998303876--7679996---421312567875677874166665----30001-
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCE---DTAELQLQQPHVVRLETRPPNIEG----EGEIT- 313 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIE---D~~El~l~~~~~v~~~~~~~~~e~----~~~~t- 313 (483)
T Consensus 27 s~~i~~Ge~~~llGpnGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~----~~igyv~q~~~~~~~~tv~e~l~~ 102 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ----RSTGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCHHHH----HHEEEEECCHHCCCCCHHHHHHHH
T ss_conf 8899288399999999998899999983798788317899987827667756----227999411330734549999986
Q ss_pred ------------HHHHHHHHHHCCCCEEEECCCC---CHHH----HHHHH-HHHCCCCEEEHHHC
Q ss_conf ------------8999987520599889965758---7999----99999-98739701020004
Q gi|254780724|r 314 ------------MRDLVKNCLRMRPERIILGEVR---GPEV----LDLLQ-AMNTGHDGSMGTIH 358 (483)
Q Consensus 314 ------------~~~ll~~aLR~~PD~IiVGEiR---g~Ea----~~~l~-A~~TGH~G~ltTlH 358 (483)
T Consensus 103 ~~~l~~LS~gqrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~t-iii~th 166 (192)
T cd03232 103 SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQA-ILCTIH 166 (192)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf 6777337976765899999984499889984887688989999999999999969999-999983