HHsearch alignment for GI: 254780724 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.51 E-value=0.003 Score=41.36 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=30.3
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22588489981888888899999983038767679996
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
T Consensus 23 pk~GEi~gLiGpNGaGKSTLlk~i~Gll~P~~G~i~~~ 60 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDP 60 (255)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECCC
T ss_conf 98980999989999709999999967986887547468