HHsearch alignment for GI: 254780724 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.52 E-value=0.0076 Score=38.49 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 86225884899818888888999999830
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
T Consensus 16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~~ 44 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78889989999999999899999988876