HHsearch alignment for GI: 254780724 and conserved domain: cd03253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00018 Score=49.80 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=37.4
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 89862258848998188888889999998303876767999642
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
T Consensus 20 isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 63 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ 63 (236)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCE
T ss_conf 68998699999999999998999999974385488748999999