HHsearch alignment for GI: 254780724 and conserved domain: cd03254
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00024 Score=49.01 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=36.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
T Consensus 23 nl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 65 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65 (229)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 9998799999999999980999999996686678738999999