HHsearch alignment for GI: 254780724 and conserved domain: cd03263
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.88 E-value=0.0026 Score=41.71 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=47.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98622588489981888888899999983038767679996421--3125678756778741666653000189999875
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
T Consensus 22 s~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~--~l~~~ltv~e~l~~~ 99 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFD--ALFDELTVREHLRFY 99 (220)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCC--CCCCCCCHHHHHHHH
T ss_conf 889849959999989997399999999669878899779999977658898860569992356--568788799999998
Q ss_pred HHCC
Q ss_conf 2059
Q gi|254780724|r 322 LRMR 325 (483)
Q Consensus 322 LR~~ 325 (483)
T Consensus 100 ~~~~ 103 (220)
T cd03263 100 ARLK 103 (220)
T ss_pred HHHC
T ss_conf 9756