HHsearch alignment for GI: 254780724 and conserved domain: cd03263

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.88  E-value=0.0026  Score=41.71  Aligned_cols=80  Identities=16%  Similarity=0.089  Sum_probs=47.4

Q ss_pred             HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             98622588489981888888899999983038767679996421--3125678756778741666653000189999875
Q gi|254780724|r  244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC  321 (483)
Q Consensus       244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a  321 (483)
T Consensus        22 s~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~--~l~~~ltv~e~l~~~   99 (220)
T cd03263          22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFD--ALFDELTVREHLRFY   99 (220)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCC--CCCCCCCHHHHHHHH
T ss_conf             889849959999989997399999999669878899779999977658898860569992356--568788799999998


Q ss_pred             HHCC
Q ss_conf             2059
Q gi|254780724|r  322 LRMR  325 (483)
Q Consensus       322 LR~~  325 (483)
T Consensus       100 ~~~~  103 (220)
T cd03263         100 ARLK  103 (220)
T ss_pred             HHHC
T ss_conf             9756