HHsearch alignment for GI: 254780724 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.64 E-value=0.0027 Score=41.67 Aligned_cols=42 Identities=24% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 41 sf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G 82 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82 (236)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 578848959999999983099999999649488715999999