Query gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 483
No_of_seqs 273 out of 4129
Neff 7.1
Searched_HMMs 39220
Date Sun May 29 19:53:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780724.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4962 CpaF Flp pilus assembl 100.0 0 0 675.6 33.8 345 85-434 8-352 (355)
2 PRK13900 type IV secretion sys 100.0 0 0 590.8 34.7 294 124-418 12-328 (332)
3 PRK13833 conjugal transfer pro 100.0 0 0 588.9 35.7 308 111-435 8-320 (323)
4 PRK13894 conjugal transfer ATP 100.0 0 0 582.0 36.5 293 124-428 23-320 (320)
5 PRK13851 type IV secretion sys 100.0 0 0 573.0 33.3 292 122-416 9-328 (343)
6 TIGR02788 VirB11 P-type DNA tr 100.0 0 0 557.7 26.8 284 130-413 1-327 (328)
7 TIGR02782 TrbB_P P-type conjug 100.0 0 0 530.0 20.5 291 126-424 13-314 (315)
8 pfam00437 GSPII_E Type II/IV s 100.0 0 0 499.3 29.9 271 120-401 8-281 (283)
9 COG0630 VirB11 Type IV secreto 100.0 0 0 436.9 29.8 297 112-419 3-302 (312)
10 TIGR02538 type_IV_pilB type IV 100.0 0 0 415.2 15.5 260 107-400 188-460 (577)
11 TIGR02533 type_II_gspE general 100.0 0 0 410.1 16.2 263 99-398 100-377 (495)
12 cd01130 VirB11-like_ATPase Typ 100.0 0 0 375.4 20.8 183 226-410 1-185 (186)
13 COG2804 PulE Type II secretory 100.0 2.8E-45 0 335.0 24.4 263 105-399 119-391 (500)
14 TIGR01420 pilT_fam twitching m 100.0 2.8E-45 0 335.8 19.8 275 115-416 3-288 (350)
15 PRK10436 hypothetical protein; 100.0 1.1E-42 0 317.0 28.0 266 105-402 76-351 (461)
16 COG2805 PilT Tfp pilus assembl 100.0 4.3E-37 1.1E-41 277.8 18.0 253 133-402 14-271 (353)
17 TIGR02525 plasmid_TraJ plasmid 100.0 3.2E-37 8.2E-42 278.6 16.3 276 130-421 18-319 (374)
18 cd01129 PulE-GspE PulE/GspE Th 100.0 7.7E-35 2E-39 262.0 15.8 207 175-401 2-215 (264)
19 cd01131 PilT Pilus retraction 100.0 5.4E-33 1.4E-37 249.1 13.7 144 250-402 1-147 (198)
20 COG5008 PilU Tfp pilus assembl 100.0 1.5E-27 3.9E-32 211.0 19.1 234 127-375 10-250 (375)
21 TIGR02524 dot_icm_DotB Dot/Icm 99.9 5.1E-23 1.3E-27 179.4 12.7 254 134-403 16-286 (358)
22 PRK13764 ATPase; Provisional 99.8 4E-17 1E-21 138.2 18.8 281 90-401 91-391 (605)
23 COG1855 ATPase (PilT family) [ 99.7 6.3E-15 1.6E-19 122.9 17.3 291 83-413 92-405 (604)
24 TIGR02858 spore_III_AA stage I 99.4 2.6E-11 6.7E-16 97.6 16.0 236 145-402 18-270 (282)
25 COG3854 SpoIIIAA ncharacterize 99.3 3.7E-10 9.4E-15 89.6 15.8 225 134-368 25-261 (308)
26 TIGR02868 CydC ABC transporter 98.0 3.8E-05 9.8E-10 54.5 8.1 122 210-349 356-481 (566)
27 PRK00440 rfc replication facto 97.9 0.0014 3.7E-08 43.6 15.1 143 223-387 12-187 (318)
28 PRK08533 flagellar accessory p 97.9 0.00017 4.3E-09 50.1 10.3 177 236-435 10-218 (230)
29 pfam03266 DUF265 Protein of un 97.9 0.00028 7.2E-09 48.5 10.6 115 252-372 1-147 (168)
30 PRK04328 hypothetical protein; 97.8 0.00014 3.6E-09 50.6 8.6 61 216-289 3-66 (250)
31 COG1618 Predicted nucleotide k 97.8 5.7E-05 1.5E-09 53.3 6.5 117 247-371 2-151 (179)
32 TIGR03346 chaperone_ClpB ATP-d 97.8 2.3E-05 5.9E-10 56.1 4.5 101 247-351 592-696 (852)
33 PRK04195 replication factor C 97.8 0.0026 6.7E-08 41.7 14.8 144 223-388 10-189 (403)
34 pfam02492 cobW CobW/HypB/UreG, 97.8 0.00016 4.1E-09 50.2 8.5 81 252-336 2-94 (174)
35 cd03246 ABCC_Protease_Secretio 97.8 8.5E-05 2.2E-09 52.1 6.9 113 244-358 22-154 (173)
36 PTZ00243 ABC transporter; Prov 97.8 0.00031 8E-09 48.2 9.8 58 243-301 679-736 (1560)
37 PRK09302 circadian clock prote 97.8 0.0012 3.2E-08 44.0 12.8 212 241-478 257-499 (501)
38 PRK06067 flagellar accessory p 97.8 0.00014 3.5E-09 50.6 7.9 165 247-434 29-226 (241)
39 PRK12402 replication factor C 97.8 0.0011 2.8E-08 44.4 12.4 160 223-387 11-211 (337)
40 cd03247 ABCC_cytochrome_bd The 97.8 0.00015 3.8E-09 50.4 7.8 114 244-358 22-155 (178)
41 cd01120 RecA-like_NTPases RecA 97.8 0.00037 9.4E-09 47.7 9.6 82 252-335 1-95 (165)
42 smart00382 AAA ATPases associa 97.8 6.4E-05 1.6E-09 53.0 5.6 86 250-337 2-90 (148)
43 cd03223 ABCD_peroxisomal_ALDP 97.7 5.4E-05 1.4E-09 53.5 4.9 104 244-347 21-135 (166)
44 COG1066 Sms Predicted ATP-depe 97.7 0.0021 5.4E-08 42.4 12.9 142 237-421 80-244 (456)
45 COG0542 clpA ATP-binding subun 97.7 6.4E-05 1.6E-09 53.0 4.6 99 247-351 518-622 (786)
46 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00026 6.7E-09 48.7 7.6 77 247-334 22-98 (177)
47 cd03228 ABCC_MRP_Like The MRP 97.7 0.00015 3.9E-09 50.4 6.3 113 244-358 22-153 (171)
48 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00011 2.8E-09 51.3 5.4 98 247-350 593-696 (852)
49 PRK10865 protein disaggregatio 97.6 7.2E-05 1.8E-09 52.6 4.3 99 247-351 595-699 (857)
50 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00013 3.2E-09 50.9 5.4 110 244-359 19-139 (157)
51 pfam07724 AAA_2 AAA domain (Cd 97.6 0.00018 4.6E-09 49.8 6.2 96 248-349 1-102 (168)
52 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00023 6E-09 49.1 6.7 101 245-358 21-125 (144)
53 cd03233 ABC_PDR_domain1 The pl 97.6 0.00017 4.3E-09 50.0 6.0 93 244-339 27-124 (202)
54 cd03230 ABC_DR_subfamily_A Thi 97.6 0.0002 5E-09 49.6 6.2 114 245-359 21-154 (173)
55 COG0523 Putative GTPases (G3E 97.5 0.00032 8.3E-09 48.1 6.7 94 252-348 3-107 (323)
56 TIGR03015 pepcterm_ATPase puta 97.5 0.00023 5.8E-09 49.1 5.9 132 229-363 22-166 (269)
57 PRK11160 cysteine/glutathione 97.5 0.00014 3.6E-09 50.6 4.5 50 242-291 359-410 (575)
58 PRK08903 hypothetical protein; 97.5 0.0068 1.7E-07 38.8 13.2 160 221-386 12-183 (227)
59 PTZ00243 ABC transporter; Prov 97.5 0.00014 3.5E-09 50.7 4.4 93 242-347 1328-1423(1560)
60 cd03229 ABC_Class3 This class 97.5 0.00088 2.2E-08 45.0 8.5 114 244-358 20-159 (178)
61 CHL00095 clpC Clp protease ATP 97.5 0.00025 6.4E-09 48.9 5.7 99 247-351 536-640 (823)
62 COG1126 GlnQ ABC-type polar am 97.5 0.001 2.6E-08 44.6 8.6 114 244-358 22-194 (240)
63 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.5 0.00017 4.3E-09 50.0 4.4 42 244-285 23-64 (238)
64 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0049 1.3E-07 39.8 11.8 160 221-387 9-186 (226)
65 pfam00625 Guanylate_kin Guanyl 97.4 0.0061 1.6E-07 39.2 12.2 117 250-372 1-134 (182)
66 PRK13657 cyclic beta-1,2-gluca 97.4 0.00018 4.7E-09 49.8 4.3 43 243-285 354-396 (585)
67 cd03253 ABCC_ATM1_transporter 97.4 0.00018 4.7E-09 49.8 4.2 44 243-286 20-63 (236)
68 cd03213 ABCG_EPDR ABCG transpo 97.4 0.0013 3.4E-08 43.8 8.6 113 244-359 29-170 (194)
69 TIGR00929 VirB4_CagE type IV s 97.4 0.00012 3E-09 51.2 3.2 40 248-287 514-558 (931)
70 PRK10789 putative multidrug tr 97.4 0.00017 4.5E-09 49.9 4.0 47 240-286 331-377 (569)
71 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00021 5.4E-09 49.4 4.4 42 244-285 22-63 (234)
72 cd03291 ABCC_CFTR1 The CFTR su 97.4 0.00021 5.4E-09 49.4 4.3 43 243-285 56-98 (282)
73 PRK13695 putative NTPase; Prov 97.4 0.002 5E-08 42.6 9.3 103 250-359 3-138 (174)
74 PRK10246 exonuclease subunit S 97.4 0.00013 3.3E-09 50.8 3.2 10 369-378 976-985 (1047)
75 PRK10522 multidrug transporter 97.4 0.00023 5.9E-09 49.1 4.4 44 243-286 342-385 (547)
76 cd03245 ABCC_bacteriocin_expor 97.4 0.00021 5.4E-09 49.3 4.3 42 244-285 24-65 (220)
77 cd01121 Sms Sms (bacterial rad 97.4 0.0055 1.4E-07 39.5 11.5 156 234-422 66-235 (372)
78 cd03254 ABCC_Glucan_exporter_l 97.4 0.00024 6.1E-09 49.0 4.4 43 244-286 23-65 (229)
79 PRK10261 glutathione transport 97.4 0.0013 3.4E-08 43.8 8.2 43 243-285 343-385 (623)
80 COG0593 DnaA ATPase involved i 97.4 0.0045 1.2E-07 40.1 10.8 169 220-393 80-276 (408)
81 PRK13544 consensus 97.4 0.00043 1.1E-08 47.2 5.6 42 244-285 21-62 (208)
82 cd03231 ABC_CcmA_heme_exporter 97.4 0.00058 1.5E-08 46.3 6.2 43 244-286 20-62 (201)
83 TIGR02857 CydD ABC transporter 97.4 0.00015 3.9E-09 50.3 3.2 41 243-283 371-411 (570)
84 cd03252 ABCC_Hemolysin The ABC 97.4 0.00027 6.9E-09 48.6 4.4 43 244-286 22-64 (237)
85 cd03216 ABC_Carb_Monos_I This 97.4 0.001 2.6E-08 44.6 7.3 109 245-359 21-141 (163)
86 TIGR02324 CP_lyasePhnL phospho 97.3 0.00021 5.3E-09 49.4 3.7 56 241-296 25-83 (224)
87 cd01124 KaiC KaiC is a circadi 97.3 0.0025 6.3E-08 41.9 9.2 38 252-289 1-41 (187)
88 PRK09302 circadian clock prote 97.3 0.0012 3E-08 44.1 7.6 39 250-288 24-66 (501)
89 cd03248 ABCC_TAP TAP, the Tran 97.3 0.00029 7.4E-09 48.4 4.4 43 243-285 33-75 (226)
90 cd03369 ABCC_NFT1 Domain 2 of 97.3 0.00034 8.7E-09 47.9 4.7 42 244-285 28-69 (207)
91 cd03257 ABC_NikE_OppD_transpor 97.3 0.00082 2.1E-08 45.2 6.6 42 244-285 25-66 (228)
92 PRK13538 cytochrome c biogenes 97.3 0.0012 2.9E-08 44.2 7.3 42 244-285 21-62 (204)
93 PRK10636 putative ABC transpor 97.3 0.0022 5.6E-08 42.3 8.7 49 239-287 327-375 (638)
94 pfam00308 Bac_DnaA Bacterial d 97.3 0.0071 1.8E-07 38.7 11.3 163 223-391 4-196 (219)
95 pfam06745 KaiC KaiC. This fami 97.3 0.0019 4.8E-08 42.8 8.2 166 247-434 16-220 (231)
96 PRK08233 hypothetical protein; 97.3 0.00021 5.4E-09 49.4 3.3 36 251-288 4-39 (182)
97 cd03290 ABCC_SUR1_N The SUR do 97.3 0.00033 8.4E-09 48.0 4.3 42 244-285 21-62 (218)
98 cd03214 ABC_Iron-Siderophores_ 97.3 0.00046 1.2E-08 47.0 5.1 90 245-335 20-125 (180)
99 cd03296 ABC_CysA_sulfate_impor 97.3 0.00095 2.4E-08 44.8 6.7 81 244-326 22-103 (239)
100 PRK10790 putative multidrug tr 97.3 0.00025 6.3E-09 48.9 3.7 46 240-285 357-402 (593)
101 PRK11176 lipid transporter ATP 97.3 0.0003 7.6E-09 48.3 4.0 45 241-285 359-403 (581)
102 cd03299 ABC_ModC_like Archeal 97.3 0.00094 2.4E-08 44.8 6.5 78 244-324 19-98 (235)
103 TIGR01192 chvA glucan exporter 97.3 0.00034 8.8E-09 47.9 4.2 41 244-284 355-395 (592)
104 cd00009 AAA The AAA+ (ATPases 97.3 0.0015 3.7E-08 43.5 7.4 78 247-336 16-95 (151)
105 PRK11823 DNA repair protein Ra 97.3 0.005 1.3E-07 39.8 10.1 152 237-421 77-241 (454)
106 cd03288 ABCC_SUR2 The SUR doma 97.3 0.00041 1E-08 47.3 4.5 42 244-285 41-82 (257)
107 PRK11248 tauB taurine transpor 97.3 0.00037 9.4E-09 47.7 4.2 43 244-286 21-63 (255)
108 cd03289 ABCC_CFTR2 The CFTR su 97.2 0.0004 1E-08 47.4 4.3 41 244-285 24-64 (275)
109 cd03112 CobW_like The function 97.2 0.00095 2.4E-08 44.8 6.1 91 253-345 3-106 (158)
110 PRK11174 cysteine/glutathione 97.2 0.00046 1.2E-08 47.0 4.5 41 244-285 370-410 (588)
111 PRK13543 cytochrome c biogenes 97.2 0.00084 2.1E-08 45.2 5.8 44 243-286 30-73 (214)
112 cd03244 ABCC_MRP_domain2 Domai 97.2 0.00048 1.2E-08 46.9 4.5 42 244-285 24-65 (221)
113 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.0014 3.7E-08 43.5 6.9 43 244-286 24-66 (254)
114 PRK10247 putative ABC transpor 97.2 0.0005 1.3E-08 46.7 4.5 42 244-285 27-68 (225)
115 PRK11537 putative GTP-binding 97.2 0.00074 1.9E-08 45.6 5.4 108 252-362 6-135 (317)
116 PRK13646 cbiO cobalt transport 97.2 0.00049 1.3E-08 46.8 4.4 42 244-285 27-68 (286)
117 PRK12724 flagellar biosynthesi 97.2 0.00022 5.5E-09 49.3 2.5 121 249-371 222-354 (432)
118 KOG0735 consensus 97.2 0.00097 2.5E-08 44.8 5.8 94 228-334 409-503 (952)
119 TIGR02673 FtsE cell division A 97.2 0.00095 2.4E-08 44.8 5.8 42 244-285 22-63 (215)
120 PRK13546 teichoic acids export 97.2 0.0013 3.2E-08 43.9 6.4 42 244-285 44-85 (264)
121 COG4178 ABC-type uncharacteriz 97.2 0.00069 1.8E-08 45.8 5.0 128 243-375 412-589 (604)
122 PRK13631 cbiO cobalt transport 97.2 0.00054 1.4E-08 46.5 4.5 42 244-285 46-87 (320)
123 PRK13542 consensus 97.2 0.00055 1.4E-08 46.5 4.5 42 244-285 38-79 (224)
124 pfam03215 Rad17 Rad17 cell cyc 97.2 0.00091 2.3E-08 44.9 5.5 54 223-276 15-71 (490)
125 PRK10895 putative ABC transpor 97.2 0.00056 1.4E-08 46.4 4.4 42 244-285 23-64 (241)
126 cd03217 ABC_FeS_Assembly ABC-t 97.2 0.0011 2.7E-08 44.4 5.8 40 244-283 20-61 (200)
127 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00052 1.3E-08 46.6 4.2 40 246-285 26-65 (218)
128 COG1132 MdlB ABC-type multidru 97.2 0.00057 1.4E-08 46.4 4.4 46 244-290 349-394 (567)
129 PRK13539 cytochrome c biogenes 97.2 0.00057 1.5E-08 46.4 4.4 43 244-286 22-64 (206)
130 cd03232 ABC_PDR_domain2 The pl 97.2 0.0036 9.2E-08 40.8 8.4 110 244-358 27-166 (192)
131 TIGR03608 L_ocin_972_ABC putat 97.2 0.00058 1.5E-08 46.3 4.3 43 244-286 18-60 (206)
132 PRK13635 cbiO cobalt transport 97.2 0.00059 1.5E-08 46.3 4.3 42 244-285 27-68 (279)
133 COG1419 FlhF Flagellar GTP-bin 97.1 0.00043 1.1E-08 47.2 3.6 117 248-370 201-332 (407)
134 TIGR03375 type_I_sec_LssB type 97.1 0.00055 1.4E-08 46.5 4.1 46 240-285 481-526 (694)
135 TIGR00618 sbcc exonuclease Sbc 97.1 0.00031 7.9E-09 48.2 2.8 28 249-276 29-56 (1063)
136 cd03297 ABC_ModC_molybdenum_tr 97.1 0.0028 7.1E-08 41.6 7.6 74 250-325 23-103 (214)
137 PRK13853 type IV secretion sys 97.1 0.00065 1.7E-08 45.9 4.4 37 247-283 423-464 (789)
138 COG1136 SalX ABC-type antimicr 97.1 0.00068 1.7E-08 45.8 4.5 42 244-285 25-66 (226)
139 cd04104 p47_IIGP_like p47 (47- 97.1 0.0015 3.8E-08 43.4 6.2 85 251-338 2-94 (197)
140 TIGR03415 ABC_choXWV_ATP choli 97.1 0.00068 1.7E-08 45.8 4.5 67 219-285 10-85 (382)
141 cd03301 ABC_MalK_N The N-termi 97.1 0.00065 1.6E-08 46.0 4.4 43 245-287 21-63 (213)
142 cd01394 radB RadB. The archaea 97.1 0.0089 2.3E-07 38.0 10.1 46 239-284 8-54 (218)
143 cd03300 ABC_PotA_N PotA is an 97.1 0.00066 1.7E-08 45.9 4.3 79 244-324 20-99 (232)
144 PRK12723 flagellar biosynthesi 97.1 0.0017 4.4E-08 43.0 6.4 115 250-369 174-305 (388)
145 pfam06414 Zeta_toxin Zeta toxi 97.1 0.0091 2.3E-07 37.9 10.1 136 248-386 10-155 (191)
146 PRK10070 glycine betaine trans 97.1 0.002 5E-08 42.6 6.7 67 219-285 14-89 (400)
147 cd03250 ABCC_MRP_domain1 Domai 97.1 0.00042 1.1E-08 47.3 3.2 42 243-284 24-65 (204)
148 PRK13540 cytochrome c biogenes 97.1 0.00076 1.9E-08 45.5 4.5 42 244-285 21-62 (200)
149 PRK13830 conjugal transfer pro 97.1 0.00042 1.1E-08 47.3 3.1 38 246-283 452-491 (818)
150 cd03256 ABC_PhnC_transporter A 97.1 0.00071 1.8E-08 45.7 4.2 42 245-286 22-63 (241)
151 PRK00300 gmk guanylate kinase; 97.1 0.026 6.7E-07 34.7 12.2 32 246-277 3-34 (208)
152 PRK13634 cbiO cobalt transport 97.1 0.00065 1.7E-08 46.0 4.0 41 245-285 15-55 (276)
153 PRK11432 fbpC ferric transport 97.1 0.0024 6.1E-08 42.0 6.9 42 244-285 26-67 (351)
154 PRK13548 hmuV hemin importer A 97.1 0.0009 2.3E-08 45.0 4.7 43 244-286 22-64 (257)
155 PRK11701 phnK phosphonates tra 97.1 0.00087 2.2E-08 45.1 4.5 42 244-285 26-67 (258)
156 cd03235 ABC_Metallic_Cations A 97.1 0.0009 2.3E-08 45.0 4.6 42 244-285 19-60 (213)
157 PRK13637 cbiO cobalt transport 97.1 0.0007 1.8E-08 45.7 4.0 42 244-285 27-68 (287)
158 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00079 2E-08 45.4 4.2 42 245-286 25-66 (220)
159 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00089 2.3E-08 45.0 4.4 42 244-285 20-61 (205)
160 pfam05049 IIGP Interferon-indu 97.0 0.0073 1.9E-07 38.6 9.1 120 228-350 10-142 (375)
161 COG4619 ABC-type uncharacteriz 97.0 0.00062 1.6E-08 46.1 3.6 46 240-285 19-64 (223)
162 cd03262 ABC_HisP_GlnQ_permease 97.0 0.00084 2.1E-08 45.2 4.3 43 244-286 20-62 (213)
163 PRK13643 cbiO cobalt transport 97.0 0.00084 2.1E-08 45.2 4.2 42 244-285 26-67 (288)
164 PRK13342 recombination factor 97.0 0.029 7.4E-07 34.4 12.1 23 252-274 39-61 (417)
165 PRK13636 cbiO cobalt transport 97.0 0.00092 2.3E-08 44.9 4.4 42 244-285 26-67 (285)
166 cd03115 SRP The signal recogni 97.0 0.0018 4.6E-08 42.9 5.9 116 252-370 2-133 (173)
167 PRK10771 thiQ thiamine transpo 97.0 0.00091 2.3E-08 44.9 4.3 78 244-323 19-97 (233)
168 PRK08084 DNA replication initi 97.0 0.024 6.1E-07 35.0 11.5 166 216-386 11-193 (235)
169 cd02024 NRK1 Nicotinamide ribo 97.0 0.00084 2.1E-08 45.2 4.1 33 252-287 1-34 (187)
170 PRK10419 nikE nickel transport 97.0 0.0019 4.9E-08 42.6 6.0 79 245-323 33-117 (266)
171 cd03294 ABC_Pro_Gly_Bertaine T 97.0 0.00085 2.2E-08 45.2 4.1 104 219-324 10-129 (269)
172 PRK07667 uridine kinase; Provi 97.0 0.00096 2.4E-08 44.8 4.3 34 246-279 10-43 (190)
173 PRK13644 cbiO cobalt transport 97.0 0.00099 2.5E-08 44.7 4.4 42 244-285 22-63 (274)
174 pfam00735 Septin Septin. Membe 97.0 0.00049 1.2E-08 46.8 2.8 24 250-273 4-27 (280)
175 COG3839 MalK ABC-type sugar tr 97.0 0.001 2.6E-08 44.6 4.4 42 244-285 23-64 (338)
176 PRK11131 ATP-dependent RNA hel 97.0 0.0091 2.3E-07 38.0 9.3 28 153-183 119-146 (1295)
177 cd03261 ABC_Org_Solvent_Resist 97.0 0.001 2.6E-08 44.5 4.4 79 244-325 20-105 (235)
178 TIGR03265 PhnT2 putative 2-ami 97.0 0.0031 8E-08 41.2 6.9 42 244-285 24-65 (353)
179 COG0419 SbcC ATPase involved i 97.0 0.00061 1.6E-08 46.1 3.2 26 249-274 24-49 (908)
180 pfam00448 SRP54 SRP54-type pro 97.0 0.00044 1.1E-08 47.2 2.5 82 251-334 2-92 (196)
181 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.00099 2.5E-08 44.7 4.3 41 245-285 19-59 (211)
182 PRK13898 type IV secretion sys 97.0 0.00062 1.6E-08 46.1 3.2 38 247-284 443-481 (800)
183 PRK13647 cbiO cobalt transport 97.0 0.001 2.6E-08 44.6 4.3 42 244-285 25-66 (273)
184 TIGR00382 clpX ATP-dependent C 97.0 0.00058 1.5E-08 46.3 3.0 68 206-274 107-176 (452)
185 PRK11264 putative amino-acid A 97.0 0.0011 2.9E-08 44.2 4.5 39 245-283 22-60 (248)
186 cd03264 ABC_drug_resistance_li 97.0 0.0017 4.2E-08 43.1 5.3 38 247-285 23-60 (211)
187 TIGR02315 ABC_phnC phosphonate 97.0 0.001 2.7E-08 44.5 4.2 128 245-373 23-230 (253)
188 cd02028 UMPK_like Uridine mono 97.0 0.00079 2E-08 45.4 3.6 32 252-283 1-33 (179)
189 COG0488 Uup ATPase components 97.0 0.0077 2E-07 38.5 8.6 48 241-288 339-386 (530)
190 cd03234 ABCG_White The White s 97.0 0.00067 1.7E-08 45.8 3.2 34 244-277 27-60 (226)
191 PRK05642 DNA replication initi 97.0 0.034 8.7E-07 33.9 12.0 162 220-387 12-193 (234)
192 PRK13652 cbiO cobalt transport 97.0 0.001 2.5E-08 44.7 4.1 42 244-285 24-65 (277)
193 PRK11629 lolD lipoprotein tran 97.0 0.0011 2.9E-08 44.3 4.3 42 244-285 29-70 (233)
194 PRK10575 iron-hydroxamate tran 97.0 0.0012 3E-08 44.2 4.4 42 244-285 31-72 (265)
195 cd03224 ABC_TM1139_LivF_branch 97.0 0.0012 3E-08 44.1 4.5 42 244-285 20-61 (222)
196 PRK13645 cbiO cobalt transport 97.0 0.0011 2.8E-08 44.4 4.3 41 245-285 32-72 (289)
197 PRK06696 uridine kinase; Valid 97.0 0.0021 5.3E-08 42.4 5.7 46 238-283 13-60 (227)
198 COG1131 CcmA ABC-type multidru 97.0 0.0032 8.1E-08 41.2 6.6 40 245-284 26-65 (293)
199 COG1123 ATPase components of v 97.0 0.0056 1.4E-07 39.4 7.8 84 244-328 311-400 (539)
200 PRK11034 clpA ATP-dependent Cl 97.0 0.001 2.7E-08 44.5 4.1 95 248-351 486-586 (758)
201 cd03225 ABC_cobalt_CbiO_domain 97.0 0.0011 2.8E-08 44.3 4.2 42 244-285 21-62 (211)
202 PRK11831 putative ABC transpor 96.9 0.0012 3.1E-08 44.1 4.4 42 244-285 28-69 (269)
203 COG1643 HrpA HrpA-like helicas 96.9 0.0078 2E-07 38.4 8.5 23 50-72 99-121 (845)
204 PRK10584 putative ABC transpor 96.9 0.0011 2.8E-08 44.4 4.1 41 245-285 31-71 (228)
205 PRK11231 fecE iron-dicitrate t 96.9 0.0013 3.2E-08 43.9 4.4 42 244-285 22-63 (255)
206 PRK00149 dnaA chromosomal repl 96.9 0.03 7.6E-07 34.4 11.4 63 222-284 114-182 (447)
207 cd02023 UMPK Uridine monophosp 96.9 0.0013 3.2E-08 44.0 4.3 31 252-283 1-31 (198)
208 KOG0054 consensus 96.9 0.0039 9.9E-08 40.5 6.8 156 243-400 540-716 (1381)
209 PRK09493 glnQ glutamine ABC tr 96.9 0.0013 3.4E-08 43.8 4.4 42 244-285 21-62 (240)
210 PRK13873 conjugal transfer ATP 96.9 0.00074 1.9E-08 45.6 3.1 37 247-283 438-476 (815)
211 TIGR01967 DEAH_box_HrpA ATP-de 96.9 0.00054 1.4E-08 46.5 2.4 41 207-247 881-923 (1320)
212 PRK09544 znuC high-affinity zi 96.9 0.0014 3.5E-08 43.7 4.5 43 244-286 24-66 (251)
213 PRK11000 maltose/maltodextrin 96.9 0.0012 3.1E-08 44.1 4.2 42 244-285 23-64 (369)
214 PRK10619 histidine/lysine/argi 96.9 0.0014 3.5E-08 43.7 4.4 41 244-284 25-65 (257)
215 PRK10908 cell division protein 96.9 0.0012 3E-08 44.1 4.1 42 244-285 22-63 (222)
216 TIGR03410 urea_trans_UrtE urea 96.9 0.0013 3.4E-08 43.8 4.3 81 244-326 20-104 (230)
217 PRK11614 livF leucine/isoleuci 96.9 0.0014 3.6E-08 43.6 4.4 42 244-285 25-66 (237)
218 cd03292 ABC_FtsE_transporter F 96.9 0.0013 3.4E-08 43.8 4.3 40 246-285 23-62 (214)
219 PRK09536 btuD corrinoid ABC tr 96.9 0.0013 3.2E-08 44.0 4.1 166 244-412 22-255 (409)
220 COG3596 Predicted GTPase [Gene 96.9 0.0025 6.4E-08 41.9 5.6 109 241-350 30-147 (296)
221 TIGR03258 PhnT 2-aminoethylpho 96.9 0.0021 5.5E-08 42.3 5.3 41 244-284 25-67 (362)
222 COG1120 FepC ABC-type cobalami 96.9 0.0015 3.9E-08 43.4 4.5 43 244-286 22-64 (258)
223 COG1124 DppF ABC-type dipeptid 96.9 0.0048 1.2E-07 39.9 7.1 81 244-324 27-111 (252)
224 PRK11664 ATP-dependent RNA hel 96.9 0.0028 7.2E-08 41.5 5.9 21 456-476 615-636 (812)
225 PRK13649 cbiO cobalt transport 96.9 0.0014 3.5E-08 43.7 4.2 43 244-286 27-69 (280)
226 PRK13639 cbiO cobalt transport 96.9 0.0014 3.6E-08 43.6 4.3 41 245-285 23-63 (275)
227 PRK10253 iron-enterobactin tra 96.9 0.0012 3.1E-08 44.1 3.9 42 244-285 27-68 (265)
228 PRK13638 cbiO cobalt transport 96.9 0.0015 3.7E-08 43.5 4.3 42 244-285 21-62 (271)
229 PRK13632 cbiO cobalt transport 96.9 0.0014 3.7E-08 43.6 4.3 42 244-285 30-71 (273)
230 cd03263 ABC_subfamily_A The AB 96.9 0.0026 6.7E-08 41.7 5.6 80 244-325 22-103 (220)
231 PRK07429 phosphoribulokinase; 96.9 0.0014 3.6E-08 43.6 4.2 36 251-287 9-45 (331)
232 PRK13650 cbiO cobalt transport 96.9 0.0014 3.6E-08 43.6 4.2 41 245-285 25-65 (276)
233 pfam00004 AAA ATPase family as 96.9 0.0028 7.2E-08 41.5 5.7 66 253-334 1-66 (131)
234 smart00072 GuKc Guanylate kina 96.9 0.042 1.1E-06 33.3 11.9 117 250-372 2-135 (184)
235 PRK13641 cbiO cobalt transport 96.9 0.0013 3.3E-08 43.9 3.9 42 244-285 27-68 (286)
236 PRK11247 ssuB aliphatic sulfon 96.9 0.0014 3.5E-08 43.7 4.0 42 244-285 32-73 (257)
237 PRK10851 sulfate/thiosulfate t 96.9 0.0015 3.7E-08 43.5 4.1 42 244-285 22-63 (352)
238 PRK11300 livG leucine/isoleuci 96.9 0.0016 4.2E-08 43.2 4.4 43 244-286 25-67 (255)
239 cd01850 CDC_Septin CDC/Septin. 96.8 0.0008 2E-08 45.3 2.8 24 250-273 4-27 (276)
240 PRK09361 radB DNA repair and r 96.8 0.0082 2.1E-07 38.3 7.9 44 241-284 14-58 (224)
241 cd03295 ABC_OpuCA_Osmoprotecti 96.8 0.0015 3.8E-08 43.4 4.1 42 244-285 21-62 (242)
242 cd03114 ArgK-like The function 96.8 0.0071 1.8E-07 38.7 7.6 34 253-286 2-37 (148)
243 PRK13651 cobalt transporter AT 96.8 0.0018 4.5E-08 42.9 4.5 39 245-283 28-66 (304)
244 PRK13891 conjugal transfer pro 96.8 0.00092 2.4E-08 44.9 3.0 41 243-283 481-523 (852)
245 PTZ00265 multidrug resistance 96.8 0.0026 6.7E-08 41.7 5.3 41 244-284 405-445 (1467)
246 PRK13541 cytochrome c biogenes 96.8 0.0017 4.3E-08 43.0 4.4 43 244-286 20-62 (195)
247 TIGR03499 FlhF flagellar biosy 96.8 0.00052 1.3E-08 46.6 1.7 39 249-287 193-235 (282)
248 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.0016 4.2E-08 43.2 4.2 37 249-285 24-60 (246)
249 pfam00485 PRK Phosphoribulokin 96.8 0.00097 2.5E-08 44.8 3.1 26 252-277 1-26 (196)
250 COG1122 CbiO ABC-type cobalt t 96.8 0.0017 4.2E-08 43.1 4.2 40 246-285 26-65 (235)
251 PRK06731 flhF flagellar biosyn 96.8 0.00069 1.8E-08 45.8 2.3 38 251-288 76-115 (270)
252 PRK13547 hmuV hemin importer A 96.8 0.0011 2.8E-08 44.4 3.2 34 244-277 21-54 (273)
253 PRK10078 ribose 1,5-bisphospho 96.8 0.0026 6.6E-08 41.8 5.1 130 250-393 2-147 (184)
254 cd03259 ABC_Carb_Solutes_like 96.8 0.0018 4.7E-08 42.8 4.3 41 245-285 21-61 (213)
255 PRK05703 flhF flagellar biosyn 96.8 0.00077 2E-08 45.4 2.4 38 249-287 209-251 (412)
256 TIGR00955 3a01204 Pigment prec 96.8 0.0012 3E-08 44.2 3.3 163 246-462 54-291 (671)
257 PRK11144 modC molybdate transp 96.8 0.0018 4.7E-08 42.8 4.3 40 246-285 20-59 (352)
258 KOG0054 consensus 96.8 0.002 5E-08 42.6 4.5 122 240-383 1156-1279(1381)
259 CHL00081 chlI Mg-protoporyphyr 96.8 0.0023 5.8E-08 42.2 4.7 155 240-404 22-215 (347)
260 PRK11650 ugpC glycerol-3-phosp 96.8 0.0018 4.5E-08 42.9 4.2 42 244-285 24-65 (358)
261 cd03266 ABC_NatA_sodium_export 96.8 0.0036 9.1E-08 40.8 5.7 41 244-284 25-65 (218)
262 PRK13633 cobalt transporter AT 96.8 0.0019 5E-08 42.6 4.4 42 244-285 31-72 (281)
263 PRK03918 chromosome segregatio 96.8 0.0012 3.1E-08 44.0 3.3 13 391-403 861-873 (882)
264 smart00487 DEXDc DEAD-like hel 96.8 0.0062 1.6E-07 39.1 6.9 57 235-291 9-68 (201)
265 PRK06995 flhF flagellar biosyn 96.8 0.0043 1.1E-07 40.3 6.0 115 250-373 176-308 (404)
266 COG1116 TauB ABC-type nitrate/ 96.8 0.005 1.3E-07 39.8 6.4 44 244-287 23-66 (248)
267 CHL00131 ycf16 sulfate ABC tra 96.8 0.0042 1.1E-07 40.3 6.0 41 244-284 26-68 (252)
268 PRK08118 topology modulation p 96.8 0.0052 1.3E-07 39.6 6.4 65 251-332 2-66 (167)
269 COG0572 Udk Uridine kinase [Nu 96.8 0.002 5E-08 42.6 4.2 36 251-287 9-45 (218)
270 PRK11124 artP arginine transpo 96.8 0.0021 5.5E-08 42.3 4.4 41 245-285 23-63 (242)
271 cd03269 ABC_putative_ATPase Th 96.7 0.0066 1.7E-07 38.9 6.8 43 244-286 20-62 (210)
272 PRK13648 cbiO cobalt transport 96.7 0.0023 5.8E-08 42.2 4.5 39 247-285 32-70 (269)
273 PRK00411 cdc6 cell division co 96.7 0.0036 9.2E-08 40.8 5.5 29 360-390 319-347 (394)
274 PRK13642 cbiO cobalt transport 96.7 0.0021 5.3E-08 42.5 4.2 41 245-285 28-68 (277)
275 PRK11147 ABC transporter ATPas 96.7 0.002 5E-08 42.6 4.1 44 244-287 339-382 (632)
276 TIGR01447 recD exodeoxyribonuc 96.7 0.0024 6.2E-08 42.0 4.5 129 242-371 234-413 (753)
277 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0012 3.1E-08 44.1 3.0 77 252-331 2-78 (173)
278 PRK13407 bchI magnesium chelat 96.7 0.0034 8.7E-08 40.9 5.3 152 241-402 19-202 (334)
279 PRK05480 uridine kinase; Provi 96.7 0.0019 4.9E-08 42.6 4.0 35 248-283 4-38 (209)
280 cd03279 ABC_sbcCD SbcCD and ot 96.7 0.0014 3.6E-08 43.6 3.2 127 248-394 26-177 (213)
281 PRK09452 potA putrescine/sperm 96.7 0.0022 5.5E-08 42.3 4.2 42 244-285 37-78 (378)
282 cd03218 ABC_YhbG The ABC trans 96.7 0.0024 6E-08 42.1 4.3 42 244-285 20-61 (232)
283 COG3451 VirB4 Type IV secretor 96.7 0.0014 3.5E-08 43.7 3.1 42 249-290 435-478 (796)
284 PRK10733 hflB ATP-dependent me 96.7 0.0017 4.3E-08 43.0 3.6 79 241-335 176-254 (644)
285 TIGR02928 TIGR02928 orc1/cdc6 96.7 0.0054 1.4E-07 39.5 6.2 48 237-284 27-83 (383)
286 cd03265 ABC_DrrA DrrA is the A 96.7 0.0032 8.3E-08 41.1 5.0 41 245-285 21-61 (220)
287 TIGR02982 heterocyst_DevA ABC 96.7 0.00094 2.4E-08 44.8 2.3 139 232-372 13-214 (220)
288 pfam01580 FtsK_SpoIIIE FtsK/Sp 96.7 0.0016 4.2E-08 43.2 3.4 35 251-286 39-78 (202)
289 PRK10762 D-ribose transporter 96.7 0.0024 6.1E-08 42.0 4.3 146 100-285 167-313 (501)
290 PTZ00301 uridine kinase; Provi 96.7 0.0022 5.6E-08 42.3 4.1 37 250-286 3-43 (210)
291 cd03215 ABC_Carb_Monos_II This 96.7 0.0016 4.1E-08 43.2 3.3 115 244-359 20-163 (182)
292 COG4988 CydD ABC-type transpor 96.7 0.002 5.1E-08 42.5 3.8 49 244-292 341-389 (559)
293 cd02026 PRK Phosphoribulokinas 96.7 0.0024 6.2E-08 41.9 4.2 35 252-287 1-36 (273)
294 PRK06217 hypothetical protein; 96.7 0.006 1.5E-07 39.2 6.2 24 251-274 2-25 (185)
295 PRK09984 phosphonate/organopho 96.7 0.0017 4.3E-08 43.1 3.4 34 245-278 25-58 (262)
296 cd03227 ABC_Class2 ABC-type Cl 96.7 0.0093 2.4E-07 37.9 7.2 112 251-364 22-145 (162)
297 PRK09580 sufC cysteine desulfu 96.7 0.0027 6.9E-08 41.6 4.4 41 244-284 21-63 (248)
298 PRK11308 dppF dipeptide transp 96.7 0.0046 1.2E-07 40.0 5.6 40 246-285 37-76 (327)
299 PRK00091 miaA tRNA delta(2)-is 96.7 0.0073 1.9E-07 38.6 6.6 96 249-350 3-113 (304)
300 PRK08727 hypothetical protein; 96.7 0.058 1.5E-06 32.3 11.6 162 221-389 13-191 (233)
301 KOG0952 consensus 96.7 0.0024 6E-08 42.0 4.0 42 247-288 940-984 (1230)
302 PRK03695 vitamin B12-transport 96.6 0.0024 6.2E-08 42.0 4.0 41 243-284 16-56 (245)
303 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.6 0.0028 7.2E-08 41.5 4.3 42 244-285 42-83 (224)
304 PRK09270 frcK putative fructos 96.6 0.0052 1.3E-07 39.7 5.7 31 247-277 31-61 (230)
305 cd03267 ABC_NatA_like Similar 96.6 0.0027 6.8E-08 41.7 4.2 42 244-285 41-82 (236)
306 KOG0057 consensus 96.6 0.0035 9E-08 40.8 4.8 106 246-351 374-507 (591)
307 TIGR00176 mobB molybdopterin-g 96.6 0.0066 1.7E-07 38.9 6.2 41 253-293 2-47 (165)
308 TIGR03263 guanyl_kin guanylate 96.6 0.0024 6E-08 42.0 3.9 27 250-276 1-27 (180)
309 PRK13640 cbiO cobalt transport 96.6 0.0019 4.7E-08 42.8 3.3 41 244-284 28-71 (283)
310 KOG1051 consensus 96.6 0.01 2.6E-07 37.6 7.1 96 249-351 590-689 (898)
311 PRK11819 putative ABC transpor 96.6 0.0025 6.3E-08 41.9 3.9 46 243-288 343-388 (556)
312 KOG0060 consensus 96.6 0.0017 4.4E-08 43.0 3.1 56 239-294 450-509 (659)
313 TIGR03411 urea_trans_UrtD urea 96.6 0.003 7.8E-08 41.3 4.4 42 244-285 22-63 (242)
314 COG4172 ABC-type uncharacteriz 96.6 0.034 8.7E-07 33.9 9.7 154 144-323 225-391 (534)
315 PRK10751 molybdopterin-guanine 96.6 0.012 3.2E-07 37.0 7.5 33 252-284 4-37 (170)
316 PRK09700 D-allose transporter 96.6 0.0028 7.2E-08 41.5 4.2 42 244-285 283-324 (510)
317 cd02025 PanK Pantothenate kina 96.6 0.0033 8.5E-08 41.0 4.5 33 252-284 1-36 (220)
318 PRK07261 topology modulation p 96.6 0.0071 1.8E-07 38.7 6.2 65 252-333 2-66 (171)
319 cd03268 ABC_BcrA_bacitracin_re 96.6 0.0034 8.6E-08 41.0 4.5 42 244-285 20-61 (208)
320 COG4525 TauB ABC-type taurine 96.6 0.0032 8E-08 41.2 4.3 44 243-286 24-67 (259)
321 cd03260 ABC_PstB_phosphate_tra 96.6 0.0029 7.5E-08 41.4 4.2 79 244-325 20-108 (227)
322 cd03258 ABC_MetN_methionine_tr 96.6 0.0028 7.1E-08 41.5 4.0 41 245-285 26-66 (233)
323 pfam02367 UPF0079 Uncharacteri 96.6 0.0057 1.4E-07 39.4 5.5 43 237-279 2-44 (123)
324 PRK03992 proteasome-activating 96.6 0.0053 1.3E-07 39.6 5.3 78 242-335 158-235 (390)
325 PRK10982 galactose/methyl gala 96.5 0.0036 9.1E-08 40.8 4.3 41 245-285 269-309 (491)
326 TIGR01189 ccmA heme ABC export 96.5 0.0035 8.9E-08 40.9 4.2 41 246-286 22-62 (204)
327 pfam05673 DUF815 Protein of un 96.5 0.07 1.8E-06 31.8 12.9 172 211-387 14-220 (248)
328 cd01127 TrwB Bacterial conjuga 96.5 0.0029 7.4E-08 41.4 3.8 26 325-350 270-298 (410)
329 PRK13768 GTPase; Provisional 96.5 0.0023 5.9E-08 42.1 3.3 42 251-292 3-46 (253)
330 PRK10418 nikD nickel transport 96.5 0.0033 8.5E-08 41.0 4.1 35 243-277 22-56 (254)
331 cd03238 ABC_UvrA The excision 96.5 0.0076 1.9E-07 38.5 5.9 29 245-273 16-44 (176)
332 COG3842 PotA ABC-type spermidi 96.5 0.0042 1.1E-07 40.3 4.5 40 246-285 27-66 (352)
333 cd03236 ABC_RNaseL_inhibitor_d 96.5 0.003 7.6E-08 41.4 3.7 38 247-284 23-60 (255)
334 PRK11607 potG putrescine trans 96.5 0.0036 9.1E-08 40.8 4.1 41 244-284 39-79 (377)
335 PRK13549 xylose transporter AT 96.5 0.0025 6.3E-08 41.9 3.2 42 244-285 282-324 (513)
336 COG3911 Predicted ATPase [Gene 96.5 0.003 7.6E-08 41.4 3.6 33 250-287 9-41 (183)
337 pfam03205 MobB Molybdopterin g 96.5 0.0066 1.7E-07 38.9 5.4 43 252-294 2-49 (122)
338 PRK10636 putative ABC transpor 96.5 0.0037 9.4E-08 40.7 4.1 34 320-353 443-479 (638)
339 KOG0055 consensus 96.5 0.021 5.4E-07 35.4 7.9 50 243-292 372-423 (1228)
340 TIGR01187 potA polyamine ABC t 96.5 0.0043 1.1E-07 40.2 4.3 169 256-427 2-250 (331)
341 PRK13537 lipooligosaccharide t 96.5 0.0087 2.2E-07 38.1 5.9 115 244-359 25-195 (304)
342 PRK11147 ABC transporter ATPas 96.4 0.0045 1.1E-07 40.1 4.4 13 145-157 221-233 (632)
343 PRK10938 putative molybdenum t 96.4 0.0044 1.1E-07 40.2 4.2 34 244-277 280-313 (490)
344 PRK11288 araG L-arabinose tran 96.4 0.0043 1.1E-07 40.2 4.2 41 244-284 273-313 (501)
345 PRK09473 oppD oligopeptide tra 96.4 0.0033 8.5E-08 41.0 3.5 35 245-279 37-71 (330)
346 PRK12726 flagellar biosynthesi 96.4 0.0017 4.2E-08 43.1 2.0 85 244-334 200-294 (407)
347 pfam08433 KTI12 Chromatin asso 96.4 0.029 7.4E-07 34.4 8.3 105 252-367 1-111 (266)
348 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0049 1.3E-07 39.8 4.4 42 244-285 20-61 (236)
349 PRK11022 dppD dipeptide transp 96.4 0.0041 1E-07 40.4 3.9 36 245-280 28-63 (327)
350 TIGR03167 tRNA_sel_U_synt tRNA 96.4 0.005 1.3E-07 39.8 4.3 119 242-373 119-244 (311)
351 PRK11889 flhF flagellar biosyn 96.4 0.0019 4.9E-08 42.7 2.2 118 251-372 242-373 (436)
352 cd00268 DEADc DEAD-box helicas 96.4 0.0099 2.5E-07 37.7 5.8 65 227-292 12-84 (203)
353 PRK10261 glutathione transport 96.4 0.0048 1.2E-07 39.9 4.2 50 309-359 465-523 (623)
354 PRK01156 chromosome segregatio 96.4 0.0039 1E-07 40.5 3.7 20 390-409 873-892 (895)
355 KOG0733 consensus 96.4 0.0045 1.2E-07 40.1 4.0 77 242-334 215-291 (802)
356 pfam05729 NACHT NACHT domain. 96.4 0.017 4.2E-07 36.1 6.9 23 252-274 2-24 (165)
357 TIGR03522 GldA_ABC_ATP gliding 96.4 0.0054 1.4E-07 39.6 4.4 115 244-359 22-191 (301)
358 pfam12128 DUF3584 Protein of u 96.4 0.0042 1.1E-07 40.3 3.8 28 264-291 1064-1091(1192)
359 cd03271 ABC_UvrA_II The excisi 96.4 0.0032 8.1E-08 41.2 3.2 27 245-271 16-42 (261)
360 cd03240 ABC_Rad50 The catalyti 96.3 0.0038 9.8E-08 40.6 3.5 28 249-276 21-48 (204)
361 COG4559 ABC-type hemin transpo 96.3 0.0054 1.4E-07 39.5 4.3 39 246-284 23-61 (259)
362 PRK13700 conjugal transfer pro 96.3 0.0038 9.8E-08 40.6 3.5 40 250-289 185-225 (732)
363 TIGR03597 GTPase_YqeH ribosome 96.3 0.011 2.8E-07 37.4 5.8 81 163-283 107-187 (360)
364 PRK06893 DNA replication initi 96.3 0.092 2.3E-06 30.9 10.9 159 221-386 10-187 (229)
365 cd00071 GMPK Guanosine monopho 96.3 0.022 5.7E-07 35.2 7.3 28 252-279 1-28 (137)
366 pfam05496 RuvB_N Holliday junc 96.3 0.0063 1.6E-07 39.1 4.4 106 221-350 18-129 (234)
367 TIGR00968 3a0106s01 sulfate AB 96.3 0.0058 1.5E-07 39.3 4.2 50 244-293 20-71 (241)
368 COG3267 ExeA Type II secretory 96.3 0.012 3E-07 37.1 5.8 122 235-376 36-161 (269)
369 COG1341 Predicted GTPase or GT 96.3 0.037 9.5E-07 33.7 8.3 102 246-350 69-203 (398)
370 PRK13536 nodulation factor exp 96.3 0.0065 1.7E-07 39.0 4.4 116 244-360 27-198 (306)
371 TIGR00972 3a0107s01c2 phosphat 96.3 0.0032 8.2E-08 41.1 2.9 94 247-361 24-142 (248)
372 cd03278 ABC_SMC_barmotin Barmo 96.3 0.0046 1.2E-07 40.0 3.6 27 250-276 22-48 (197)
373 PTZ00088 adenylate kinase 1; P 96.3 0.08 2E-06 31.4 9.9 107 251-401 1-114 (225)
374 pfam10412 TrwB_AAD_bind Type I 96.3 0.0049 1.3E-07 39.8 3.7 10 327-336 245-254 (386)
375 COG0467 RAD55 RecA-superfamily 96.3 0.0079 2E-07 38.4 4.7 48 243-290 16-66 (260)
376 CHL00176 ftsH cell division pr 96.3 0.014 3.6E-07 36.6 6.0 76 241-334 201-278 (631)
377 COG1119 ModF ABC-type molybden 96.2 0.0048 1.2E-07 39.9 3.6 39 243-281 50-88 (257)
378 TIGR01846 type_I_sec_HlyB type 96.2 0.0057 1.5E-07 39.4 4.0 48 235-282 476-524 (703)
379 PRK10646 putative ATPase; Prov 96.2 0.0093 2.4E-07 37.9 5.1 44 236-279 14-57 (153)
380 PRK13796 GTP-binding protein Y 96.2 0.013 3.2E-07 37.0 5.7 81 163-283 115-195 (367)
381 pfam00270 DEAD DEAD/DEAH box h 96.2 0.015 3.9E-07 36.4 6.1 50 242-292 7-60 (167)
382 COG0378 HypB Ni2+-binding GTPa 96.2 0.0069 1.8E-07 38.8 4.2 35 251-285 14-48 (202)
383 pfam07728 AAA_5 AAA domain (dy 96.2 0.017 4.4E-07 36.0 6.2 88 252-349 1-93 (139)
384 TIGR02204 MsbA_rel ABC transpo 96.2 0.013 3.4E-07 36.8 5.7 134 136-290 256-413 (576)
385 PRK10535 macrolide transporter 96.2 0.0071 1.8E-07 38.7 4.2 17 165-182 180-196 (648)
386 COG0410 LivF ABC-type branched 96.2 0.0075 1.9E-07 38.5 4.3 41 245-285 24-64 (237)
387 pfam01078 Mg_chelatase Magnesi 96.2 0.0097 2.5E-07 37.8 4.9 41 237-277 9-49 (207)
388 PRK11388 DNA-binding transcrip 96.2 0.011 2.8E-07 37.4 5.1 59 222-283 320-382 (639)
389 cd01855 YqeH YqeH. YqeH is an 96.2 0.0097 2.5E-07 37.8 4.8 37 240-276 117-153 (190)
390 PRK13409 putative ATPase RIL; 96.2 0.018 4.7E-07 35.8 6.2 36 247-282 362-397 (590)
391 cd00046 DEXDc DEAD-like helica 96.2 0.0064 1.6E-07 39.0 3.8 41 251-291 1-44 (144)
392 COG1125 OpuBA ABC-type proline 96.1 0.0078 2E-07 38.4 4.3 47 244-290 21-74 (309)
393 PRK05342 clpX ATP-dependent pr 96.1 0.0052 1.3E-07 39.6 3.3 28 249-276 108-135 (411)
394 COG4107 PhnK ABC-type phosphon 96.1 0.0093 2.4E-07 37.9 4.5 40 246-285 28-67 (258)
395 COG2274 SunT ABC-type bacterio 96.1 0.0062 1.6E-07 39.1 3.6 43 243-285 492-534 (709)
396 KOG0061 consensus 96.1 0.0051 1.3E-07 39.7 3.2 34 244-277 50-83 (613)
397 KOG0926 consensus 96.1 0.033 8.5E-07 34.0 7.3 92 245-337 266-384 (1172)
398 TIGR03269 met_CoM_red_A2 methy 96.1 0.0077 2E-07 38.4 4.0 40 245-284 305-344 (520)
399 PRK07952 DNA replication prote 96.1 0.017 4.2E-07 36.1 5.7 83 241-335 87-169 (242)
400 PRK12727 flagellar biosynthesi 96.1 0.022 5.7E-07 35.2 6.3 118 247-372 345-478 (557)
401 pfam04665 Pox_A32 Poxvirus A32 96.1 0.0079 2E-07 38.4 3.9 167 246-421 9-205 (241)
402 PRK10744 phosphate transporter 96.0 0.0059 1.5E-07 39.3 3.2 31 244-274 30-60 (257)
403 COG4987 CydC ABC-type transpor 96.0 0.011 2.8E-07 37.4 4.5 97 241-350 355-455 (573)
404 TIGR01277 thiQ thiamine ABC tr 96.0 0.0079 2E-07 38.4 3.7 62 244-305 18-80 (213)
405 KOG1970 consensus 96.0 0.01 2.6E-07 37.6 4.3 17 254-270 114-130 (634)
406 cd01428 ADK Adenylate kinase ( 96.0 0.051 1.3E-06 32.7 7.8 21 253-273 2-22 (194)
407 PRK05201 hslU ATP-dependent pr 96.0 0.0063 1.6E-07 39.1 3.1 27 250-276 50-76 (442)
408 COG0464 SpoVK ATPases of the A 96.0 0.019 4.8E-07 35.8 5.5 75 244-334 270-344 (494)
409 pfam03029 ATP_bind_1 Conserved 96.0 0.0038 9.6E-08 40.6 1.9 79 255-333 1-97 (234)
410 COG4133 CcmA ABC-type transpor 95.9 0.0074 1.9E-07 38.6 3.4 42 244-285 22-63 (209)
411 COG1219 ClpX ATP-dependent pro 95.9 0.0068 1.7E-07 38.8 3.1 27 249-275 96-122 (408)
412 TIGR03574 selen_PSTK L-seryl-t 95.9 0.057 1.5E-06 32.4 7.8 122 252-389 1-129 (249)
413 PRK10463 hydrogenase nickel in 95.9 0.02 5E-07 35.6 5.5 52 237-288 89-142 (290)
414 pfam00009 GTP_EFTU Elongation 95.9 0.0087 2.2E-07 38.1 3.6 28 248-275 1-28 (185)
415 TIGR01448 recD_rel helicase, R 95.9 0.013 3.3E-07 36.9 4.5 39 234-273 350-388 (769)
416 PRK06835 DNA replication prote 95.9 0.019 4.8E-07 35.7 5.3 98 240-349 173-275 (330)
417 COG3638 ABC-type phosphate/pho 95.9 0.013 3.3E-07 36.9 4.4 40 247-286 27-66 (258)
418 TIGR02639 ClpA ATP-dependent C 95.9 0.0057 1.5E-07 39.4 2.6 246 83-349 283-623 (774)
419 TIGR01193 bacteriocin_ABC ABC- 95.9 0.011 2.7E-07 37.5 3.9 189 65-283 333-533 (710)
420 pfam04851 ResIII Type III rest 95.9 0.033 8.3E-07 34.1 6.4 44 249-292 17-61 (103)
421 PRK02224 chromosome segregatio 95.9 0.0082 2.1E-07 38.3 3.3 20 389-408 856-875 (880)
422 PRK11153 metN DL-methionine tr 95.9 0.013 3.2E-07 37.0 4.2 40 246-285 27-66 (343)
423 COG1127 Ttg2A ABC-type transpo 95.9 0.014 3.5E-07 36.7 4.4 40 244-283 28-67 (263)
424 PRK10762 D-ribose transporter 95.9 0.012 3.1E-07 37.1 4.1 25 307-331 287-311 (501)
425 cd04163 Era Era subfamily. Er 95.8 0.057 1.4E-06 32.4 7.5 23 251-273 4-26 (168)
426 pfam01695 IstB IstB-like ATP b 95.8 0.0087 2.2E-07 38.1 3.3 128 224-369 17-157 (178)
427 pfam00350 Dynamin_N Dynamin fa 95.8 0.0075 1.9E-07 38.6 2.9 26 253-278 1-28 (168)
428 PRK06526 transposase; Provisio 95.8 0.015 3.7E-07 36.5 4.3 108 247-370 95-209 (254)
429 PRK09700 D-allose transporter 95.8 0.014 3.5E-07 36.7 4.1 65 209-277 279-346 (510)
430 KOG0924 consensus 95.7 0.065 1.7E-06 32.0 7.5 46 242-287 363-409 (1042)
431 TIGR01978 sufC FeS assembly AT 95.7 0.016 4E-07 36.3 4.3 78 243-322 19-102 (248)
432 COG5019 CDC3 Septin family pro 95.7 0.0072 1.8E-07 38.7 2.6 24 250-273 23-46 (373)
433 TIGR01271 CFTR_protein cystic 95.7 0.0087 2.2E-07 38.1 2.9 171 235-422 1271-1469(1534)
434 PRK10416 cell division protein 95.7 0.048 1.2E-06 32.9 6.7 134 234-371 272-435 (499)
435 COG0444 DppD ABC-type dipeptid 95.7 0.015 3.9E-07 36.4 4.2 36 247-282 28-64 (316)
436 KOG0922 consensus 95.7 0.1 2.7E-06 30.5 8.4 13 253-265 69-81 (674)
437 PRK09183 transposase/IS protei 95.7 0.016 4E-07 36.3 4.2 107 247-368 98-211 (258)
438 PRK12377 putative replication 95.7 0.03 7.7E-07 34.3 5.6 93 242-348 93-191 (248)
439 TIGR03269 met_CoM_red_A2 methy 95.7 0.019 4.7E-07 35.8 4.4 140 100-257 194-345 (520)
440 COG0563 Adk Adenylate kinase a 95.7 0.011 2.9E-07 37.3 3.3 93 251-349 1-102 (178)
441 COG1123 ATPase components of v 95.7 0.056 1.4E-06 32.4 6.9 121 133-259 203-354 (539)
442 COG3840 ThiQ ABC-type thiamine 95.6 0.01 2.6E-07 37.6 3.0 43 244-286 19-61 (231)
443 TIGR00073 hypB hydrogenase acc 95.6 0.012 3.2E-07 37.0 3.4 76 254-373 38-114 (225)
444 PRK11192 ATP-dependent RNA hel 95.6 0.035 8.8E-07 33.9 5.7 131 229-375 161-295 (417)
445 TIGR00368 TIGR00368 Mg chelata 95.6 0.012 3.2E-07 37.0 3.4 151 239-403 202-396 (505)
446 PRK13549 xylose transporter AT 95.6 0.017 4.4E-07 36.0 4.1 161 99-277 168-346 (513)
447 PTZ00265 multidrug resistance 95.6 0.0067 1.7E-07 38.9 2.0 34 243-276 1188-1221(1467)
448 PHA00520 packaging NTPase P4 95.5 0.033 8.4E-07 34.1 5.4 108 249-375 112-222 (326)
449 PRK13721 conjugal transfer ATP 95.5 0.019 4.9E-07 35.7 4.1 41 250-290 474-515 (864)
450 PRK09435 arginine/ornithine tr 95.5 0.048 1.2E-06 32.9 6.1 60 228-287 22-88 (325)
451 PRK06647 DNA polymerase III su 95.5 0.2 5.1E-06 28.6 13.6 30 359-389 341-371 (560)
452 PRK10982 galactose/methyl gala 95.5 0.021 5.4E-07 35.4 4.3 165 100-279 160-333 (491)
453 COG1100 GTPase SAR1 and relate 95.5 0.015 3.9E-07 36.4 3.6 33 251-283 6-38 (219)
454 COG1201 Lhr Lhr-like helicases 95.5 0.061 1.5E-06 32.2 6.6 152 233-391 236-417 (814)
455 PRK13341 recombination factor 95.5 0.017 4.4E-07 36.0 3.7 54 320-377 487-541 (726)
456 TIGR02759 TraD_Ftype type IV c 95.5 0.015 3.8E-07 36.4 3.4 40 250-289 208-248 (613)
457 COG0802 Predicted ATPase or ki 95.5 0.03 7.6E-07 34.4 5.0 43 238-280 13-55 (149)
458 COG1118 CysA ABC-type sulfate/ 95.5 0.023 5.9E-07 35.1 4.4 40 245-284 23-62 (345)
459 COG1474 CDC6 Cdc6-related prot 95.5 0.027 6.8E-07 34.7 4.7 23 252-274 44-66 (366)
460 PRK01172 ski2-like helicase; P 95.5 0.045 1.1E-06 33.1 5.8 22 235-256 295-317 (674)
461 PRK00254 ski2-like helicase; P 95.5 0.048 1.2E-06 32.9 6.0 10 173-182 363-372 (717)
462 pfam06431 Polyoma_lg_T_C Polyo 95.4 0.025 6.3E-07 34.9 4.4 41 235-275 137-180 (417)
463 PRK08181 transposase; Validate 95.4 0.021 5.4E-07 35.4 4.1 106 246-370 102-217 (269)
464 PRK06547 hypothetical protein; 95.4 0.023 5.7E-07 35.2 4.2 37 249-286 14-50 (184)
465 pfam03308 ArgK ArgK protein. T 95.4 0.046 1.2E-06 33.1 5.8 50 237-286 13-67 (267)
466 TIGR02142 modC_ABC molybdate A 95.4 0.022 5.7E-07 35.2 4.2 39 247-285 20-58 (361)
467 TIGR02203 MsbA_lipidA lipid A 95.4 0.011 2.9E-07 37.3 2.6 130 212-362 364-500 (603)
468 PRK11288 araG L-arabinose tran 95.4 0.02 5E-07 35.6 3.8 163 99-278 165-337 (501)
469 smart00763 AAA_PrkA PrkA AAA d 95.4 0.026 6.6E-07 34.8 4.5 47 239-285 63-118 (361)
470 PRK05541 adenylylsulfate kinas 95.4 0.017 4.3E-07 36.1 3.5 63 248-324 5-67 (176)
471 cd00227 CPT Chloramphenicol (C 95.4 0.17 4.4E-06 29.0 8.7 108 250-360 2-120 (175)
472 COG1204 Superfamily II helicas 95.4 0.024 6.1E-07 35.0 4.3 21 115-135 329-349 (766)
473 smart00489 DEXDc3 DEAD-like he 95.4 0.024 6.1E-07 35.0 4.2 38 237-274 14-52 (289)
474 smart00488 DEXDc2 DEAD-like he 95.4 0.024 6.1E-07 35.0 4.2 38 237-274 14-52 (289)
475 COG0411 LivG ABC-type branched 95.4 0.0043 1.1E-07 40.2 0.4 41 246-286 26-66 (250)
476 COG4608 AppF ABC-type oligopep 95.4 0.035 8.8E-07 33.9 5.0 88 246-335 35-137 (268)
477 TIGR03005 ectoine_ehuA ectoine 95.4 0.015 3.9E-07 36.4 3.2 55 241-295 18-75 (256)
478 TIGR00150 TIGR00150 conserved 95.4 0.018 4.6E-07 35.9 3.5 38 243-280 21-58 (147)
479 TIGR01186 proV glycine betaine 95.4 0.019 4.8E-07 35.7 3.6 141 244-385 13-219 (372)
480 PRK09087 hypothetical protein; 95.4 0.22 5.7E-06 28.2 12.3 156 221-386 15-179 (226)
481 PRK11784 tRNA 2-selenouridine 95.4 0.013 3.3E-07 36.9 2.8 108 251-372 138-251 (333)
482 TIGR02475 CobW cobalamin biosy 95.4 0.02 5.1E-07 35.6 3.7 142 253-400 7-187 (349)
483 PRK01889 ribosome-associated G 95.3 0.018 4.5E-07 35.9 3.5 34 240-273 184-217 (353)
484 PRK09862 putative ATP-dependen 95.3 0.036 9.3E-07 33.7 5.0 41 237-277 197-237 (506)
485 PRK01297 ATP-dependent RNA hel 95.3 0.045 1.1E-06 33.1 5.4 121 228-365 245-370 (472)
486 TIGR00956 3a01205 Pleiotropic 95.3 0.012 3.1E-07 37.1 2.5 224 168-418 5-253 (1466)
487 COG1484 DnaC DNA replication p 95.3 0.046 1.2E-06 33.0 5.5 109 249-371 104-218 (254)
488 cd04157 Arl6 Arl6 subfamily. 95.3 0.052 1.3E-06 32.7 5.7 21 252-272 1-21 (162)
489 PRK00131 aroK shikimate kinase 95.3 0.019 4.7E-07 35.8 3.5 29 248-276 2-30 (175)
490 TIGR01241 FtsH_fam ATP-depende 95.3 0.053 1.4E-06 32.6 5.8 109 241-379 83-194 (505)
491 COG4148 ModC ABC-type molybdat 95.3 0.025 6.3E-07 34.9 4.1 39 247-285 21-59 (352)
492 KOG2373 consensus 95.3 0.0045 1.1E-07 40.1 0.2 22 247-268 270-291 (514)
493 PRK04837 ATP-dependent RNA hel 95.3 0.054 1.4E-06 32.5 5.8 126 228-371 169-300 (423)
494 COG1224 TIP49 DNA helicase TIP 95.3 0.04 1E-06 33.4 5.0 82 171-261 114-201 (450)
495 TIGR00602 rad24 checkpoint pro 95.3 0.015 3.7E-07 36.5 2.8 28 248-275 116-143 (670)
496 pfam00265 TK Thymidine kinase. 95.2 0.074 1.9E-06 31.6 6.3 105 252-359 3-112 (175)
497 TIGR03185 DNA_S_dndD DNA sulfu 95.2 0.018 4.6E-07 35.9 3.1 16 116-131 173-188 (650)
498 KOG1532 consensus 95.2 0.019 4.7E-07 35.8 3.1 61 246-319 15-75 (366)
499 TIGR02397 dnaX_nterm DNA polym 95.2 0.035 8.9E-07 33.9 4.5 53 217-275 6-61 (363)
500 cd01882 BMS1 Bms1. Bms1 is an 95.2 0.027 7E-07 34.6 4.0 38 253-290 42-95 (225)
No 1
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=675.57 Aligned_cols=345 Identities=59% Similarity=0.923 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCC
Q ss_conf 99999999999999741877896789999999999885656335885883321799856991899827838971762079
Q gi|254780724|r 85 SARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRD 164 (483)
Q Consensus 85 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~ 164 (483)
+.+..+.+.+..++......++..+...+++.+.++++|||||++|++||+++||++|++++|||+++|++++++++|.+
T Consensus 8 ~~k~~~~~~v~~~~~~~~~~~~~~e~~~l~~~i~~~~~g~G~Le~ll~dd~i~dImVn~~~~v~v~~~~~~~~t~irf~d 87 (355)
T COG4962 8 RGKRSLKDEVREYVRENNIAISEAELDSLARDIQDELTGYGPLEPLLADDDIEDIMVNGPGRVFVERKGGLEPTDIRFLD 87 (355)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 54255677889998741422225789999999998750623200344089741688627873899932745457862489
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999998098124338778798237620345315535788168884057654667888650699889999989
Q gi|254780724|r 165 NEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQ 244 (483)
Q Consensus 165 ~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~ 244 (483)
+.++.++++++++..|+++|+++|++|++||||+|+|+++||++.+||+++||||++.++++++|+.+|++++++++|||
T Consensus 88 ~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~~pPva~dGp~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~ 167 (355)
T COG4962 88 EAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNANSPPVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLR 167 (355)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 89999999999998588104689636526798866775248632578750441256552559999873895889999999
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 86225884899818888888999999830387676799964213125678756778741666653000189999875205
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
.+++.++||||||+|||||||+||+|+.|+|+++|++||||+.||+++|+||++++++++|+||++++||+||+|++|||
T Consensus 168 ~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRm 247 (355)
T COG4962 168 RAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRM 247 (355)
T ss_pred HHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHC
T ss_conf 99862015999678788799999999715797650899812366446998557886348877776558899999987532
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 99889965758799999999987397010200047888889999997553046799989999999742358899987699
Q gi|254780724|r 325 RPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRD 404 (483)
Q Consensus 325 ~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~d 404 (483)
+||||+||||||+||++|||||||||+|+|+|+||||+.+|+.||++|+++++ ..+++++|++|+|+|||++|..+
T Consensus 248 RPDRIiVGEVRG~Ea~dLL~AmnTGHdG~~~TlHans~~ea~~rle~l~~~~~----~~~~~~~i~~aidiiv~~~r~~~ 323 (355)
T COG4962 248 RPDRIIVGEVRGVEALDLLQAMNTGHDGGMGTLHANSPREALTRLEQLIAEGG----VQTIRRQIASAVDVIVQIARLGD 323 (355)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHC----CCCHHHHHHCCCEEEEEECCCCC
T ss_conf 86536888860705999998752688985021206987888898999986502----22417776312339987245666
Q ss_pred CCEEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 987899999998414988998678987540
Q gi|254780724|r 405 GSRRITNICEIVGMEGNVIITQDLLKYEVM 434 (483)
Q Consensus 405 G~Rrv~~I~Ev~g~e~~~~~~~~if~~~~~ 434 (483)
| |||++|+||.|++++.++++++|.|...
T Consensus 324 g-rri~~i~~v~g~~~~~~~~~~~~~~~~~ 352 (355)
T COG4962 324 G-RRITEIAEVTGMEGGVYVTQDIFEFDPG 352 (355)
T ss_pred C-CCCEEEEEEEEEECCEEEEEEEEEECCC
T ss_conf 6-5330034686442437997157540467
No 2
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=100.00 E-value=0 Score=590.83 Aligned_cols=294 Identities=32% Similarity=0.537 Sum_probs=281.0
Q ss_pred CCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 56335885883321799856991899827838971762079899999999999980981243387787982376203453
Q gi|254780724|r 124 YGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVI 203 (483)
Q Consensus 124 lGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~ 203 (483)
||||++||+||+|+||+||++++|||++.|+....+..|.+.+++.+++++++..+|+.+++.+|+++++||+|+|++++
T Consensus 12 LgPL~~ll~D~~V~EI~iN~~~~V~ve~~G~~~~~~~~~~~~~~l~~l~~~ia~~~~~~~~~~~P~l~a~Lp~G~Rv~~v 91 (332)
T PRK13900 12 LEPLKNIFAEDGVNEISINKPGEVWVEKRGDIRCEQIPELDLSHLKALGRLIAQATEQKISEEKPLLSATLPNGYRIQIV 91 (332)
T ss_pred HHHHHHHHCCCCCEEEEECCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 74389996099987999869997999989967980577599999999999999980996667896689991898468998
Q ss_pred CCCCCCCC-CEEEEEECCCCCCCHHHHHHCCCCCH---------------------HHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 15535788-16888405765466788865069988---------------------999998986225884899818888
Q gi|254780724|r 204 IPPLALDG-PTLTIRKFKKDKLTLDHLVSFGAVTA---------------------EGARLLQIIGRIRCNVLISGGTGS 261 (483)
Q Consensus 204 ~~p~s~~G-~~i~IRk~~~~~~~l~~l~~~g~~~~---------------------~~~~~l~~~v~~~~nilVsG~TGS 261 (483)
+||++..| ++++||||+...++++++++.|+++. ++..||+.|+++++||+|+|+|||
T Consensus 92 ~pp~~~~g~~~ltIRk~~~~~~tl~dl~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~fL~~aV~~r~NilI~G~TgS 171 (332)
T PRK13900 92 FPPACEIGQIIYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTST 171 (332)
T ss_pred ECCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 37831599847999788888899999986498665554201341567788764105799999999864871999888898
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 8889999998303876767999642131256-787567787416666530001899998752059988996575879999
Q gi|254780724|r 262 GKTTLLNCLTRYIDKDERIVTCEDTAELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL 340 (483)
Q Consensus 262 GKTT~L~al~~~i~~~~rivtIED~~El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~ 340 (483)
|||||||||+.+||+++||+||||+.||.++ ++|++++.++.. .++.+.+|+.+|+++||||+||||+|||+||.||+
T Consensus 172 GKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~-~~g~~~vt~~~Ll~~aLR~rPDRIivGEvRG~EA~ 250 (332)
T PRK13900 172 GKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKG-GQGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAF 250 (332)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCC-CCCCCEECHHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 89999999983589535356631406635666888899997168-88866086999999975689975844555719999
Q ss_pred HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEE
Q ss_conf 999998739701020004788888999999755304679998999999974235889998769998789999999841
Q gi|254780724|r 341 DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGM 418 (483)
Q Consensus 341 ~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~ 418 (483)
+|++||||||.|+|||+|||||.+|+.||.+|+++++.+++.+.++++|+++||+|||++|..+|+|+|++|.++.+.
T Consensus 251 ~~l~A~nTGH~Gs~tTiHA~sa~~a~~Rl~~l~~~~~~~~~~~~i~~~i~~aiDvVV~~~r~~~g~R~V~eI~~~~~~ 328 (332)
T PRK13900 251 SFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKRYVSEIYFTKNK 328 (332)
T ss_pred HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 999999769997114627899999999999999851689899999999998589999998849998899999986786
No 3
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=100.00 E-value=0 Score=588.91 Aligned_cols=308 Identities=33% Similarity=0.501 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHHCCCC-CHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 9999999998856563-358858833217998569918998278389717620798999999999999809812433877
Q gi|254780724|r 111 LDLFEDLCNDILGYGP-LQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPI 189 (483)
Q Consensus 111 ~~l~~~i~~e~~glGp-L~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~ 189 (483)
-++.+.+.++ +|+ +..+|+||+|+||+||+++.|||++.|+.... ..+.+++++..++.++|...|+++|+.+|+
T Consensus 8 ~r~~~~l~~~---lg~~i~~lL~Dp~VtEI~iN~~~~Vwver~G~~~~~-~~~~~~~~~~~~i~~iA~~~g~~id~~~Pi 83 (323)
T PRK13833 8 PRLVRKLQDA---LGDQLCVALDDATVVEIMLNPDGKLFIERLGHGVAP-AGEMSSAAAEIVIGSVAHALQSEADDERPI 83 (323)
T ss_pred HHHHHHHHHH---HHHHHHHHHCCCCCEEEEECCCCEEEEEECCCEEEE-CCCCCHHHHHHHHHHHHHHHCCEECCCCCE
T ss_conf 2799999985---569999970799966999838995999967967874-475899999999999999859986689855
Q ss_pred EEEEEC-CCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 879823-7620345315535788168884057654667888650699889999989862258848998188888889999
Q gi|254780724|r 190 CDARLL-DGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLN 268 (483)
Q Consensus 190 ~d~~lp-dg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~ 268 (483)
+|++|| +|+|+++++||++ .|++++||||+...+++++|++.|++++++++||+.+++.++||+|+|+||||||||||
T Consensus 84 lda~LP~~G~R~~~v~PP~~-~g~sitIRk~~~~~~tl~dlv~~g~~t~~~~~~L~~aV~~r~nilVsGgTGSGKTTlln 162 (323)
T PRK13833 84 ISGELPIGGHRFEGLLPPVV-SGPAFTIRRRASRLIPLDDYVRSKVMTEAQASTIRSAISSRLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred EEEECCCCCEEEEEECCCCC-CCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf 89987999989999878867-99529996878999999999876999999999999999818968999177775689999
Q ss_pred HHHHHC---CCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 998303---87676799964213125678756778741666653000189999875205998899657587999999999
Q gi|254780724|r 269 CLTRYI---DKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQA 345 (483)
Q Consensus 269 al~~~i---~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A 345 (483)
||+.+| +|++|++||||++|++++++|++.+.++ ..+++.+|++++|||+||||+|||+||+||++|++|
T Consensus 163 aL~~~i~~~~p~eRivtIEDt~EL~~~~~n~v~l~~~-------~~v~~~~Ll~~aLRmrPDRIivGEvRG~EA~~~L~A 235 (323)
T PRK13833 163 AVIAEIVASAPEDRLVILEDTAEIQCAAENAVLLHTS-------DTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKA 235 (323)
T ss_pred HHHHHHCCCCCHHEEEEECCCCCCCCCCCCEEEEECC-------CCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 9998640289323399945750114678877787516-------986999999997446997588830065999999999
Q ss_pred HHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEEECCEEEE
Q ss_conf 87397010200047888889999997553046799989999999742358899987699987899999998414988998
Q gi|254780724|r 346 MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEGNVIIT 425 (483)
Q Consensus 346 ~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~e~~~~~~ 425 (483)
|||||+|+|||+|||||.+++.||++|+++. +...++++|+++||+|||++|..+| |||++|+||.||++|+|.+
T Consensus 236 ~nTGH~Gs~tTiHAnsa~~al~RL~~l~~~~----~~~~~~~~ia~avdviV~i~r~~~g-Rrv~eI~eV~g~~~g~y~~ 310 (323)
T PRK13833 236 WNTGHPGGVTTIHSNTAMSALRRLEQLTAEA----SQQPMQEVIGEAVDLIVSIERTGRG-RRVRDVIHVEGFANGRYQT 310 (323)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----CHHHHHHHHHHHCCEEEEEEECCCC-CEEEEEEEEECCCCCEEEE
T ss_conf 8279998634865799999999999998852----6377999999868899999876999-4899999993245998999
Q ss_pred EEEEEEEEEC
Q ss_conf 6789875406
Q gi|254780724|r 426 QDLLKYEVMG 435 (483)
Q Consensus 426 ~~if~~~~~~ 435 (483)
++||.|+.++
T Consensus 311 ~~l~~~d~~~ 320 (323)
T PRK13833 311 EHYAQIDEDS 320 (323)
T ss_pred EEEEEECCCC
T ss_conf 7723463412
No 4
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=100.00 E-value=0 Score=582.01 Aligned_cols=293 Identities=38% Similarity=0.582 Sum_probs=274.6
Q ss_pred CCC-CHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CCCEEE
Q ss_conf 563-358858833217998569918998278389717620798999999999999809812433877879823-762034
Q gi|254780724|r 124 YGP-LQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLL-DGSRVN 201 (483)
Q Consensus 124 lGp-L~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lp-dg~Ri~ 201 (483)
||| |+++|+||+|+||+||+++.||+++.|+...... +.+.+++.++++++++.+|+++++.+|++|++|| ||+|++
T Consensus 23 lgp~l~~~L~Dp~VtEI~iN~~~~Vwver~G~~~~~~~-~l~~~~~~~~i~~lA~~~g~~i~~~~Pi~da~Lp~dG~R~~ 101 (320)
T PRK13894 23 MGPELLAALNDPKTVEIMLNADGKLWLERLGEPMRCIG-TLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFA 101 (320)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEECCC-CCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEEE
T ss_conf 55889997179996799986999599994890585167-68999999999999998098746789669999089988999
Q ss_pred EECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCC
Q ss_conf 5315535788168884057654667888650699889999989862258848998188888889999998303---8767
Q gi|254780724|r 202 VIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI---DKDE 278 (483)
Q Consensus 202 ~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i---~~~~ 278 (483)
+++||++ .|++++||||+...+++++|++.|++++++++||+.|++.++||+|+|+||||||||||||+.++ +|.+
T Consensus 102 ~~~pP~~-~~~~~sIRk~~~~~~tL~dlv~~G~~~~~~a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~i~~~~p~e 180 (320)
T PRK13894 102 GQLPPVV-PAPTFAIRKKAVAIFTLDQYVERGIMTAEQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTE 180 (320)
T ss_pred EECCCCC-CCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9878878-996599968689999999998769999999999999997287589985888656899999986320269520
Q ss_pred CEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHC
Q ss_conf 67999642131256787567787416666530001899998752059988996575879999999998739701020004
Q gi|254780724|r 279 RIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIH 358 (483)
Q Consensus 279 rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlH 358 (483)
||+||||+.||+++++|++++++ ..++|+.+|++++|||+||||+|||+||+||+++++||||||.|++||+|
T Consensus 181 RivtIED~~EL~~~~~n~v~~~~-------~~~vt~~~Ll~~aLR~rPDRIivGEvRg~Ea~~~l~A~nTGH~Gs~tTiH 253 (320)
T PRK13894 181 RVFIIEDTGEIQCAAENYVQYHT-------SIDVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLH 253 (320)
T ss_pred CEEEECCHHHHCCCCCCEEEEEC-------CCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 17752587880787777357644-------78868999999973679985876654748999999999669987205346
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEE
Q ss_conf 7888889999997553046799989999999742358899987699987899999998414988998678
Q gi|254780724|r 359 ANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEGNVIITQDL 428 (483)
Q Consensus 359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~e~~~~~~~~i 428 (483)
||||.+++.||++|+++++. ....++++|+++||+|||++| .||+|||++|.||.||++|++.+++|
T Consensus 254 A~sa~~al~Rl~~l~~~~~~--~~~~v~~~ia~avdvVV~i~r-~~g~RrV~eI~eV~G~~~g~~~~~~l 320 (320)
T PRK13894 254 ANNAKAGLDRLAMLISMHPD--SPKPIEPLIGEAVHVVVHIAR-TEGSRRIQEILEVSGYANGQYITKTL 320 (320)
T ss_pred CCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCEEEEEEE-CCCCEEEEEEEEEEECCCCEEEEEEC
T ss_conf 79999999999999863678--789999999986899999986-49964899999993002997985459
No 5
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=100.00 E-value=0 Score=572.96 Aligned_cols=292 Identities=26% Similarity=0.416 Sum_probs=268.6
Q ss_pred HCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEE
Q ss_conf 56563358858833217998569918998278389717620798999999999999809812433877879823762034
Q gi|254780724|r 122 LGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVN 201 (483)
Q Consensus 122 ~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~ 201 (483)
++||||++||+||+|+||+||++++||+++.|.+++.+..| +.+++.+++..++...++.+++.+|+++++||||+|++
T Consensus 9 ~~L~PL~~~L~Dp~VtEI~IN~p~~V~ve~~g~~~~~~~~l-~~~~~~~ia~~~a~~~~~~i~~~~Pil~a~LpdG~Rv~ 87 (343)
T PRK13851 9 FLLKPVLEWLDDPRTEEVAINRPGEAFVRQAGVFTKFPLPL-SYDDLEDIAILAGALRKQDVGPRNPLCATELPGGERLQ 87 (343)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEEECCCC-CHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 74343699864999779998689979999699379937877-99999999999988626875767864788869997899
Q ss_pred EECCCCCCCCC-EEEEEECCCCCCCHHHHHHCC-------------------------CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 53155357881-688840576546678886506-------------------------9988999998986225884899
Q gi|254780724|r 202 VIIPPLALDGP-TLTIRKFKKDKLTLDHLVSFG-------------------------AVTAEGARLLQIIGRIRCNVLI 255 (483)
Q Consensus 202 ~~~~p~s~~G~-~i~IRk~~~~~~~l~~l~~~g-------------------------~~~~~~~~~l~~~v~~~~nilV 255 (483)
+++||++..|+ +++|||+....++++++...+ ..+.++..||+.||+.++||+|
T Consensus 88 ~v~pP~~~~g~~sitIRkps~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~fL~~aV~~r~NIlI 167 (343)
T PRK13851 88 ICLPPTVPSGTVSLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQQDEAILRHYDNGDLEAFLHACVVGRLTMLL 167 (343)
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 98088446897069996664555657775420121111100001234432567877502437799999999976988999
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 81888888899999983038767679996421312567875677874166665300018999987520599889965758
Q gi|254780724|r 256 SGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 256 sG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
+|+||||||||||||+.+||+++||+||||+.||+++|+|+|++.+.. +.++.+.+|+.+|+++||||+||||+|||+|
T Consensus 168 sGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~l~~~~-~~~g~~~vt~~~Ll~~aLRmrPDRIivGEvR 246 (343)
T PRK13851 168 CGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSK-NGAGLGAVTAEHLLQASLRMRPDRILLGEMR 246 (343)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 888986199999999962896552799611500258999968999658-9888583979999999860799828998526
Q ss_pred CHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEE
Q ss_conf 79999999998739701020004788888999999755304--6799989999999742358899987699987899999
Q gi|254780724|r 336 GPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMG--GFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNIC 413 (483)
Q Consensus 336 g~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~--~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~ 413 (483)
|.||+++|+||||||+||+||+|||||.+|+.||++|++++ |.+++.+.++++|+++||+|||++|..+ .|+|++|.
T Consensus 247 G~EA~d~L~A~nTGH~GsitTiHAnSa~~a~~RL~~l~~~s~~g~~l~~~~i~~~i~~~IDvVV~~~r~~~-~R~v~EI~ 325 (343)
T PRK13851 247 DDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSPQGASLEDRTLIDMLATAIDVIIPFRAYGD-VYEVGEIW 325 (343)
T ss_pred CHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC-CEEEEEEE
T ss_conf 69999999998469998303356799999999999998735247999999999999985999999997189-25999999
Q ss_pred EEE
Q ss_conf 998
Q gi|254780724|r 414 EIV 416 (483)
Q Consensus 414 Ev~ 416 (483)
-..
T Consensus 326 ~~~ 328 (343)
T PRK13851 326 LAA 328 (343)
T ss_pred ECC
T ss_conf 677
No 6
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=100.00 E-value=0 Score=557.69 Aligned_cols=284 Identities=34% Similarity=0.573 Sum_probs=269.6
Q ss_pred HHCCCCCCEEEEECCCCEEE-EECCEE--EECCCCC---CCHHHHHHHHHHHHHHH--CCCCCC-CCCEEEEEECCCCEE
Q ss_conf 85883321799856991899-827838--9717620---79899999999999980--981243-387787982376203
Q gi|254780724|r 130 LIARDDIADIMVNGSNKVFI-EVNGKT--VETGINF---RDNEQLLSVCQRIVNQV--GRRVDE-SSPICDARLLDGSRV 200 (483)
Q Consensus 130 ll~D~~VsdI~ing~~~I~v-e~~G~~--~~~~~~f---~~~~~l~~~i~rla~~~--g~~i~~-~~P~~d~~lpdg~Ri 200 (483)
||+|++|+||.||+|+.||| |..|.+ ++.+++. .+..++.++++.+|+.+ ++.|++ .+|++.+.||+|.|+
T Consensus 1 ~L~~~~v~EI~iNrP~eVW~lE~~~gw~~~~~d~P~rkaLT~~~l~~La~~~A~~~nt~q~is~y~~P~LSa~LP~G~Rv 80 (328)
T TIGR02788 1 FLDDEDVTEICINRPGEVWVLEGRGGWRTQRFDVPERKALTFSHLRRLARAVASFSNTKQSISEYENPILSATLPGGERV 80 (328)
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEE
T ss_conf 97888840799986917999956896588887267522441899999999988765378620102286378886999479
Q ss_pred EEECCCCCCCC--CEEEEEECCCCCCCHHHHHHCCCCCH--------------------------HHHHHHHHHHCCCCC
Q ss_conf 45315535788--16888405765466788865069988--------------------------999998986225884
Q gi|254780724|r 201 NVIIPPLALDG--PTLTIRKFKKDKLTLDHLVSFGAVTA--------------------------EGARLLQIIGRIRCN 252 (483)
Q Consensus 201 ~~~~~p~s~~G--~~i~IRk~~~~~~~l~~l~~~g~~~~--------------------------~~~~~l~~~v~~~~n 252 (483)
++++||.|..+ -+++|||++...++|++|...|+++. .+.+||+.|+..++|
T Consensus 81 Q~V~PPAc~~~eTvs~tIRKpS~~~~sL~dy~~~G~F~~ar~~~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai~~~kn 160 (328)
T TIGR02788 81 QIVIPPACENDETVSITIRKPSLVDLSLDDYEEKGFFDTARAVVVPASTELSDKDEELLELLDAGDIKEFLRLAIASRKN 160 (328)
T ss_pred EEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCE
T ss_conf 99806875898858999952644455479996279854477763144344346899999998628887999999873891
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 89981888888899999983038767679996421312567-87567787416666530001899998752059988996
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQ-PHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIL 331 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~-~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiV 331 (483)
|+|+||||||||||+|||+.+||.+||+|||||+.|+.++| ||.|+|.....-.+|...+|..+||++||||+||||++
T Consensus 161 Iii~GGTgSGKTTf~kal~~~IP~~ER~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~~vt~~~Ll~scLRMrPDRI~L 240 (328)
T TIGR02788 161 IIISGGTGSGKTTFLKALVKEIPKDERLITIEDTRELFLPHHPNKVHLFYSKGVGQGSAKVTPKDLLESCLRMRPDRILL 240 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf 99990689718999999973276225278885201147888986456553464234435689899999971177405767
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHCCEEEEEEE---CCCCC
Q ss_conf 5758799999999987397010200047888889999997553--046799989999999742358899987---69998
Q gi|254780724|r 332 GEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIA--MGGFTLPSQMVREIITSSLDVIVQTQR---LRDGS 406 (483)
Q Consensus 332 GEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~--~~~~~~~~~~~~~~ia~avd~iV~~~r---~~dG~ 406 (483)
||+||.|||++++|+||||+||+||+|||||..|+.||+.|++ .+|.+++.+.|.+++...||+|||+++ ...|.
T Consensus 241 gELRG~Eaf~F~~~~nsGHpGsiTT~HA~s~~~Af~qla~l~k~s~~g~gL~~~~I~~~~~~~iDiVvq~~~dvhd~~gg 320 (328)
T TIGR02788 241 GELRGDEAFDFIRAVNSGHPGSITTVHAGSPEEAFEQLALLVKESQAGLGLDYADIVKLLREVIDIVVQLERDVHDNPGG 320 (328)
T ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCEEEEEECCEEECCCC
T ss_conf 43033257888875205988605678718989999999998720254358888999977421144789963143356897
Q ss_pred EEEEEEE
Q ss_conf 7899999
Q gi|254780724|r 407 RRITNIC 413 (483)
Q Consensus 407 Rrv~~I~ 413 (483)
|++++|.
T Consensus 321 r~~~ev~ 327 (328)
T TIGR02788 321 RKITEVY 327 (328)
T ss_pred CEEEEEE
T ss_conf 0797762
No 7
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=100.00 E-value=0 Score=530.01 Aligned_cols=291 Identities=37% Similarity=0.575 Sum_probs=264.2
Q ss_pred CCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-C--CCEEEE
Q ss_conf 3358858833217998569918998278389717620798999999999999809812433877879823-7--620345
Q gi|254780724|r 126 PLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLL-D--GSRVNV 202 (483)
Q Consensus 126 pL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lp-d--g~Ri~~ 202 (483)
-|-.+|+|++|.|||.|+.+++|||+-|.-....-.-.+......++..+|+..|..++..+|++++.|| | |||+..
T Consensus 13 ~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPldflGsRFeG 92 (315)
T TIGR02782 13 EIAAALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLDFLGSRFEG 92 (315)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCHHHCCCCC
T ss_conf 99997379883899866987010500679730016611789999999999876446043578626610751112011004
Q ss_pred ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCC
Q ss_conf 315535788168884057654667888650699889999989862258848998188888889999998303----8767
Q gi|254780724|r 203 IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI----DKDE 278 (483)
Q Consensus 203 ~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i----~~~~ 278 (483)
.+||+. .+|+|+|||.....|||++|++.|.|+..+.+.|..+|.+|+||||+||||||||||.||++..| .|++
T Consensus 93 l~PPVV-~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P~d 171 (315)
T TIGR02782 93 LLPPVV-EAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLAEIAKLNDPDD 171 (315)
T ss_pred CCCCCC-CCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 687755-6551011102241047077764044557899999999971298899814588579999999998852169996
Q ss_pred CEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHC
Q ss_conf 67999642131256787567787416666530001899998752059988996575879999999998739701020004
Q gi|254780724|r 279 RIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIH 358 (483)
Q Consensus 279 rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlH 358 (483)
|||.||||.|+|...+|.|++.|.. +.++||.+|||+.||+|||||+||||||+||.++|+||||||+|.++|+|
T Consensus 172 R~vIiEDT~ElQC~A~N~V~lrT~d-----~~Gi~M~~LLk~TLRlRPDRI~VGEVRg~eAL~LLKAWNTGHPGGi~TiH 246 (315)
T TIGR02782 172 RVVIIEDTAELQCAAENLVALRTSD-----DVGISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIH 246 (315)
T ss_pred EEEEEECCHHHHHCCCCEEEEECCC-----CCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 1899854713201378706874489-----86614788888750058873356301438999998640589953020331
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECC--CCCEEEEEEEEEEEEEC--CEEE
Q ss_conf 788888999999755304679998999999974235889998769--99878999999984149--8899
Q gi|254780724|r 359 ANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLR--DGSRRITNICEIVGMEG--NVII 424 (483)
Q Consensus 359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~--dG~Rrv~~I~Ev~g~e~--~~~~ 424 (483)
||+|..++.||++++.+.+... .....+|++|||+|||++|.+ ...|||.+|.+|.|+++ |.|.
T Consensus 247 An~a~~aL~RLeQLi~E~s~~~--kP~~~lI~eavd~v~~I~rdPn~~~GRrv~ei~~V~g~~~atG~Y~ 314 (315)
T TIGR02782 247 ANNAKAALRRLEQLIAEVSVSP--KPMQELIAEAVDLVVFIERDPNTGEGRRVQEIIKVKGFDDATGRYI 314 (315)
T ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 4886689999999998535899--7205778754102665313787986651212120137764654447
No 8
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=100.00 E-value=0 Score=499.29 Aligned_cols=271 Identities=39% Similarity=0.589 Sum_probs=255.2
Q ss_pred HHHCCCCCHHHHCCCCCCEEEEECCCCEEEE-ECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CC
Q ss_conf 8856563358858833217998569918998-278389717620798999999999999809812433877879823-76
Q gi|254780724|r 120 DILGYGPLQPLIARDDIADIMVNGSNKVFIE-VNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLL-DG 197 (483)
Q Consensus 120 e~~glGpL~~ll~D~~VsdI~ing~~~I~ve-~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lp-dg 197 (483)
-++|||||++||+||+||||+||+++.|||+ +.|+....+..|.+++++.+++.+++..+|+.+++.+|++|++|| +|
T Consensus 8 ~l~~lgpl~~ll~D~~vsDI~In~~~~v~V~~r~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~d~~l~~~g 87 (283)
T pfam00437 8 RLINLIPLEALLDDPGASDIHVNPPGRVWVRFRVGGIVLREIPDPSPAAAMRLISRIAVMAGLDISERRPPQDARLPLGG 87 (283)
T ss_pred HHHCHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCC
T ss_conf 99676257898528998799995799189999779789982577999999999999999829933332785257725688
Q ss_pred CEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-
Q ss_conf 2034531553578816888405765466788865069988999998986225884899818888888999999830387-
Q gi|254780724|r 198 SRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK- 276 (483)
Q Consensus 198 ~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~- 276 (483)
.|++++.+|. ..|++++|||++...+++++|+..|+++++++.||+.|++.++||||||||||||||+||||+.++|+
T Consensus 88 ~R~~i~~~p~-~~g~si~IRk~~~~~~tl~~L~~~g~~~~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~~ 166 (283)
T pfam00437 88 ERFRVSTPPV-VAGEAFVIRKPSSRSLTLDDLGMTGAFDADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINTD 166 (283)
T ss_pred EEEEEEECCC-CCCCEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 3799998752-367458985066778999997389778599999999999819759998899998899999999840877
Q ss_pred CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHH
Q ss_conf 67679996421312567875677874166665300018999987520599889965758799999999987397010200
Q gi|254780724|r 277 DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGT 356 (483)
Q Consensus 277 ~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltT 356 (483)
++||+||||+.|+.++++|++++.++ .+++|+.++++++|||+||+|+|||+||.|++++++|++|||.|+|||
T Consensus 167 ~~riitiED~~El~l~~~~~v~l~~~------~~~~t~~~ll~~~LR~~PD~IivGEiR~~Ea~~~l~a~~TGH~g~ltT 240 (283)
T pfam00437 167 DERIVTIEDPVEIQLEGPNQVQLNTR------LAGVTFADLLRAALRQRPDRIMVGEIRDGETADILRAANTGHPGSLST 240 (283)
T ss_pred CCCEEEECCCCEECCCCCCEEEEEEC------CCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 76278733785231798878999855------887699999999638899989757869989999999997599840785
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 047888889999997553046799989999999742358899987
Q gi|254780724|r 357 IHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQR 401 (483)
Q Consensus 357 lHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r 401 (483)
+||||+.+++.||.+| |++++...++++++.++|+++|+-|
T Consensus 241 iHA~sa~~ai~RL~~l----g~~~~~~~i~~~l~~~~~v~qrl~r 281 (283)
T pfam00437 241 LHANSAAGALTRLEQL----GMELEPFEIRSSILAVVDIVQRLVR 281 (283)
T ss_pred ECCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHEEEEEEC
T ss_conf 7149989999999985----6436999999999868759998333
No 9
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=436.92 Aligned_cols=297 Identities=39% Similarity=0.647 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECC-EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 999999998856563358858833217998569918998278-3897176207989999999999998098124338778
Q gi|254780724|r 112 DLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNG-KTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPIC 190 (483)
Q Consensus 112 ~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G-~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~ 190 (483)
.....+.++..|||+|+|+++|+.++||+|||++.|||++.+ ....++..|.+.+++..++.++++.+|+.++..+|++
T Consensus 3 ~~~~~~~~~~~g~g~l~p~l~D~~iedI~~n~~~~v~v~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~ 82 (312)
T COG0630 3 KIRYYIPREIIGLGKLEPLLRDPRIEDIVVNGPGPVYVEHKGGGSYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPIL 82 (312)
T ss_pred HHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 46543155542652353001389840699728962899970675034255456788999999999986299667888716
Q ss_pred EEEECCCCEEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 79823762034531553-57881688840576546678886506998899999898622588489981888888899999
Q gi|254780724|r 191 DARLLDGSRVNVIIPPL-ALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNC 269 (483)
Q Consensus 191 d~~lpdg~Ri~~~~~p~-s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~a 269 (483)
++.||+|+|++++.+|. +..|++++|||+...++++.+++.+|+++..++++||.+++.++||+|+|+|||||||+|||
T Consensus 83 ~~~lp~g~Ri~i~~~~~v~~~~~s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 83 DATLPDGSRIQIVLGPEVSPNGSSFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred EEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 87748864898840786568988668862668889989985437888889999999997699499988888864959999
Q ss_pred HHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 98303876767999642131256787567787416666530001899998752059988996575879999999998739
Q gi|254780724|r 270 LTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTG 349 (483)
Q Consensus 270 l~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TG 349 (483)
++.+||++.|++||||+.|+.++|+||+++.++....+ .+.+++.+++++|||++||+|+|||+||.|++.++||++||
T Consensus 163 ll~~Ip~~~rivtIEdt~E~~~~~~n~~~l~~r~~~~~-~~~v~~~dll~aalR~rPd~IivgEvrg~e~~~~~~a~~tG 241 (312)
T COG0630 163 LLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESG-SSEVSLEDLLRAALRQRPDYIIVGELRGREAFVLFQAMQTG 241 (312)
T ss_pred HHHHCCCCCCEEEECCCCEECCCCCCEEEEEECCCCCC-CCCCCHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCC
T ss_conf 98637852218995255541478876589983257776-56666999999986239986999633337799999998659
Q ss_pred CCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC-CCCCEEEEEEEEEEEEE
Q ss_conf 70102000478888899999975530467999899999997423588999876-99987899999998414
Q gi|254780724|r 350 HDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL-RDGSRRITNICEIVGME 419 (483)
Q Consensus 350 H~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~-~dG~Rrv~~I~Ev~g~e 419 (483)
| |++||+||+|+..++.||..+.+. +|.... ..+|+|+.+.+. .+..|+++.+.|+.+..
T Consensus 242 h-~~isT~ha~s~~~~~~rl~~~~~~----~p~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 302 (312)
T COG0630 242 H-GTISTIHADSPELVLDRLTELPLN----VPKEML-----LKLDVIIEQYADRVDVLRRVSRIAEIVGGR 302 (312)
T ss_pred C-CCEEEEECCCHHHHHHHHHHCCCC----CCHHHH-----CCHHHHHHHHHHHCEEEEEEEEEEEECCCC
T ss_conf 9-821688068999999998753447----962341-----237789987750110589988862222410
No 10
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=100.00 E-value=0 Score=415.20 Aligned_cols=260 Identities=24% Similarity=0.319 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCC---CEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 678999999999988565633588588332179985699---18998278389717620798999999999999809812
Q gi|254780724|r 107 LDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSN---KVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRV 183 (483)
Q Consensus 107 ~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~---~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i 183 (483)
++++.++++.++-|+++-| +||||+.+|- +|.++.+|.++....+-. .--.+++.||.-++...|
T Consensus 188 DAPvvKFvN~iL~DAir~G----------ASDIHFEPYE~~yRvRyR~DG~L~Eva~PP~--~l~~ri~aRiKvMS~LDI 255 (577)
T TIGR02538 188 DAPVVKFVNKILLDAIRKG----------ASDIHFEPYEKKYRVRYRIDGVLHEVAQPPL--KLANRIAARIKVMSRLDI 255 (577)
T ss_pred CCCCHHHHHHHHHHHHHCC----------CCCCCCCCCCCCCEEEEEECCEEHHHHCCCH--HHHHHHHHHHHHHHCCCC
T ss_conf 8870133878799998468----------8612113676872067511673164325858--899999989999732671
Q ss_pred CCCCCEEEEEECC--------CCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 4338778798237--------62034531553578816888405765466788865069988999998986225884899
Q gi|254780724|r 184 DESSPICDARLLD--------GSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLI 255 (483)
Q Consensus 184 ~~~~P~~d~~lpd--------g~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilV 255 (483)
+|.+=.+|+|++= +-||+.. +|..|..+++|...+....| ++.++|+-+..-..||.++-+|.|+|||
T Consensus 256 aEkR~PQDGRiKl~~sk~k~iDFRVStL---PTLfGEKvVLRiLDsS~a~L-di~~LGFeP~Qk~~fL~Ai~kPqGMvLV 331 (577)
T TIGR02538 256 AEKRIPQDGRIKLKLSKSKAIDFRVSTL---PTLFGEKVVLRILDSSAAKL-DIDKLGFEPDQKALFLEAIHKPQGMVLV 331 (577)
T ss_pred CCCCCCCCCCEEEEECCCEEEEEEECCC---CCCCCCEEEEEEECHHHCCC-CCHHHCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 2245687873677537844551253787---42024446677655221226-7422068888999999997079972886
Q ss_pred ECCCCCCHHHHHHHHHHH-CCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 818888888999999830-3876767999642131256787567787416666530001899998752059988996575
Q gi|254780724|r 256 SGGTGSGKTTLLNCLTRY-IDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEV 334 (483)
Q Consensus 256 sG~TGSGKTT~L~al~~~-i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEi 334 (483)
|||||||||.+||+-++. +.++.+|-|.|||+|+++|+.|||+ ++.+.++||+.+||++||||||+||||||
T Consensus 332 TGPTGSGKTVSLYTaLniLN~~~~NISTAEDPVEINLpGINQVn-------vNpK~GLTFAaALrSFLRQDPDIIMVGEI 404 (577)
T TIGR02538 332 TGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVN-------VNPKIGLTFAAALRSFLRQDPDIIMVGEI 404 (577)
T ss_pred ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEC-------CCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf 26659841687876311257767450114477246407715120-------46678878799998640689988987066
Q ss_pred CCHHHHH-HHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 8799999-99998739701020004788888999999755304679998999999974235889998
Q gi|254780724|r 335 RGPEVLD-LLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQ 400 (483)
Q Consensus 335 Rg~Ea~~-~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~ 400 (483)
||-||++ +++|++|||. ||||||+|||++++.||.+| ++++ -.|||+|.+|+=+.
T Consensus 405 RDLETAEIAiKAAqTGHL-VlSTLHTNdAp~Tl~RL~NM------Giap----FNIASSV~LI~AQR 460 (577)
T TIGR02538 405 RDLETAEIAIKAAQTGHL-VLSTLHTNDAPETLARLVNM------GIAP----FNIASSVNLIMAQR 460 (577)
T ss_pred CCHHHHHHHHHHHCCCCC-EECCCCCCCHHHHHHHHHHC------CCHH----HHHHHHHHHHHHHH
T ss_conf 642158999998404872-10100016858999999753------8413----79999999999997
No 11
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=100.00 E-value=0 Score=410.11 Aligned_cols=263 Identities=24% Similarity=0.279 Sum_probs=215.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCC---EEEEECCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 741877896789999999999885656335885883321799856991---89982783897176207989999999999
Q gi|254780724|r 99 SVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNK---VFIEVNGKTVETGINFRDNEQLLSVCQRI 175 (483)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~---I~ve~~G~~~~~~~~f~~~~~l~~~i~rl 175 (483)
++.....+.+++-+|++.++.+++.. ..|||||.++-+ |.++.+|.+...-.+- ..--..++.|+
T Consensus 100 ~~L~~~~DdAPvIrlvN~~L~~Av~e----------~ASDIHIEPfE~~L~VRfRvDGvL~~V~~Pp--k~l~~alvSRv 167 (495)
T TIGR02533 100 EDLLDLEDDAPVIRLVNSLLSRAVKE----------RASDIHIEPFEKELVVRFRVDGVLRDVLSPP--KKLQAALVSRV 167 (495)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHH----------CCCCCCCCCCCCCCEEEEECCCEEECCCCCC--HHHHCCCCCEE
T ss_conf 73137798784899999999999974----------4885453651216353663061662343787--67742430035
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCEEEEECCC----------CCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9980981243387787982376203453155----------357881688840576546678886506998899999898
Q gi|254780724|r 176 VNQVGRRVDESSPICDARLLDGSRVNVIIPP----------LALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQI 245 (483)
Q Consensus 176 a~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p----------~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~ 245 (483)
+|+..-.|++.|||++.||...+.+ +|.+|..+++|...+.. ..-+|...||.++.+..|-.+
T Consensus 168 ------KiMA~LnIAEKRLPQDGRI~Lrv~Gr~~DiRVSt~Pt~fGERvVMRLLDK~~-~~l~L~~LGm~~~~l~~~~~l 240 (495)
T TIGR02533 168 ------KIMAKLNIAEKRLPQDGRISLRVAGRDIDIRVSTVPTSFGERVVMRLLDKDA-VRLDLEALGMSPELLSSLERL 240 (495)
T ss_pred ------EECCCCCHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCEEEHHHHCHHH-HHHHHHHCCCCHHHHHHHHHH
T ss_conf ------6606777232178998726666737446678853058997100000112047-777588648888899999999
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHH-HHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 622588489981888888899999-9830387676799964213125678756778741666653000189999875205
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNC-LTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~a-l~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
+-+++|.|||||||||||||+||| |.....++.+|+|||||+||++++.+|+| ++.|.++||+.+||+.|||
T Consensus 241 i~rpHGIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~i~GIgQ~Q-------vn~kIglTFA~GLRaILRQ 313 (495)
T TIGR02533 241 IKRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQ-------VNPKIGLTFAAGLRAILRQ 313 (495)
T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEE-------ECCCCCHHHHHHHHHHHCC
T ss_conf 718896188417789852588999998635899715686578247624876365-------1465430388887886427
Q ss_pred CCCEEEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf 9988996575879999-9999987397010200047888889999997553046799989999999742358899
Q gi|254780724|r 325 RPERIILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQ 398 (483)
Q Consensus 325 ~PD~IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~ 398 (483)
|||+||||||||.||+ .++||.+|||+ ||||+|+|||..|++||.+|--+ + .+|||++.-|+=
T Consensus 314 DPDiiMvGEIRD~ETA~IAiQASLTGHL-VLSTLHTNDAAgAvtRL~DMGvE------P----FL~aSsl~GVLA 377 (495)
T TIGR02533 314 DPDIIMVGEIRDLETAQIAIQASLTGHL-VLSTLHTNDAAGAVTRLIDMGVE------P----FLLASSLLGVLA 377 (495)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCC------H----HHHHHHHHHHHH
T ss_conf 9988998231606899999987643257-65565540154466555325864------0----489999999998
No 12
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=100.00 E-value=0 Score=375.37 Aligned_cols=183 Identities=57% Similarity=0.832 Sum_probs=173.5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCC
Q ss_conf 78886506998899999898622588489981888888899999983038767679996421312567875677874166
Q gi|254780724|r 226 LDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPN 305 (483)
Q Consensus 226 l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~ 305 (483)
|++|++.|++++++++||+.|+++++||+|+|+|||||||+|++|+.++|+++|++||||+.|+.++++|++++.++..+
T Consensus 1 lddlv~~G~~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~ 80 (186)
T cd01130 1 LDDLIAQGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGN 80 (186)
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEEEEEECCC
T ss_conf 96788669999999999999998599899989999989999999996133456459841535404777756888860464
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 66530001899998752059988996575879999999998739701020004788888999999755304679998999
Q gi|254780724|r 306 IEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMV 385 (483)
Q Consensus 306 ~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~ 385 (483)
.++.+.+++.++++++||++||+|+|||+||.|++++++|++|||.|++||+||+|+.+++.||.+|+++++ ++.+.+
T Consensus 81 ~~~~~~~~~~~li~~aLR~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~--~~~~~~ 158 (186)
T cd01130 81 VEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVP--LGRPLL 158 (186)
T ss_pred CCCCCEECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCHHHH
T ss_conf 578650349999887366899737317568399999999997489860303158999999999998875479--999999
Q ss_pred HHHHHHHCCEEEEEEECC--CCCEEEE
Q ss_conf 999974235889998769--9987899
Q gi|254780724|r 386 REIITSSLDVIVQTQRLR--DGSRRIT 410 (483)
Q Consensus 386 ~~~ia~avd~iV~~~r~~--dG~Rrv~ 410 (483)
+++|+++||+|||++|.+ +|.|+|+
T Consensus 159 ~~~ia~~id~vV~~~~~~~~~~~~~v~ 185 (186)
T cd01130 159 REQIKEAIDVIVHIARLKGRRGIRRVT 185 (186)
T ss_pred HHHHHHHCCEEEEEEEECCCCCCEEEC
T ss_conf 999997577999998876999866738
No 13
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-45 Score=335.03 Aligned_cols=263 Identities=26% Similarity=0.373 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCC---EEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 896789999999999885656335885883321799856991---89982783897176207989999999999998098
Q gi|254780724|r 105 MSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNK---VFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGR 181 (483)
Q Consensus 105 ~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~---I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~ 181 (483)
-+.....++++.++.+++..| .|||||.+..+ |+++.+|.+...... ..+....++.|+.-.++.
T Consensus 119 ~d~apvv~l~n~il~~A~~~~----------ASDIHiep~~~~~~IrfRidGvL~~~~~~--~~~~~~~lvsriK~ma~L 186 (500)
T COG2804 119 ADDAPVVKLINKILSEALREG----------ASDIHIEPRENRYRIRFRIDGVLREVLEP--PKELAAALVSRLKVMAGL 186 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHCC----------CCCEEEEECCCEEEEEEEECCEEEEHHCC--CHHHHHHHHHHHHHHHCC
T ss_conf 544559999999999999749----------98167872257079999879996001115--888999999999988437
Q ss_pred CCCCCCCEEEEEEC---CCC--EEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 12433877879823---762--0345315535788168884057654667888650699889999989862258848998
Q gi|254780724|r 182 RVDESSPICDARLL---DGS--RVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLIS 256 (483)
Q Consensus 182 ~i~~~~P~~d~~lp---dg~--Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVs 256 (483)
.|.+.+-.+|+++. +|. .+.+..-| +.+|..+++|.++.... .-++.+.|+.......|+.++-+++|.+||+
T Consensus 187 DIaErR~PQdGr~~~~~~~~~vd~RvStlP-~~~GEkvVlRil~~~~~-~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvT 264 (500)
T COG2804 187 DIAERRLPQDGRIRLKLNGRKVDFRVSTLP-TFYGEKVVLRILDKDQV-ILDLEKLGMSPFQLARLLRLLNRPQGLILVT 264 (500)
T ss_pred CHHHCCCCCCCEEEEEECCEEEEEEEECCC-CCCCCEEEEEEECCCCC-CCCHHHHCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 525201787762899808835889995578-87785789998333124-6888783899889999999972897089996
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 18888888999999830387-67679996421312567875677874166665300018999987520599889965758
Q gi|254780724|r 257 GGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 257 G~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
|||||||||+||++++.+.. ..+|+|||||+|+.+++.++++ ++.+.++||+.+||++|||+||+|||||||
T Consensus 265 GPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~q-------VN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 265 GPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQ-------VNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEE-------CCCCCCCCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8999988999999999862788508984078045159851563-------140359978999999866599859983557
Q ss_pred CHHHHH-HHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 799999-9999873970102000478888899999975530467999899999997423588999
Q gi|254780724|r 336 GPEVLD-LLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQT 399 (483)
Q Consensus 336 g~Ea~~-~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~ 399 (483)
|.|++. ++||++|||. |+||+||||+.+|+.||.+|- ++.. .+++++..||-+
T Consensus 338 D~ETAeiavqAalTGHL-VlSTlHtnda~~ai~RL~~mG------v~~~----~l~s~l~gViaQ 391 (500)
T COG2804 338 DLETAEIAVQAALTGHL-VLSTLHTNDAPGAITRLLEMG------VEPY----LLASSLLGVIAQ 391 (500)
T ss_pred CHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHCC------CCHH----HHHHHHHHHHHH
T ss_conf 78899999999842886-766102176588999999849------9889----999999999998
No 14
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=100.00 E-value=2.8e-45 Score=335.75 Aligned_cols=275 Identities=25% Similarity=0.370 Sum_probs=218.1
Q ss_pred HHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEE-ECCCCCCCHHHHHHHHHHHHH---HHCCCCCCCCCEE
Q ss_conf 999998856563358858833217998569918998278389-717620798999999999999---8098124338778
Q gi|254780724|r 115 EDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTV-ETGINFRDNEQLLSVCQRIVN---QVGRRVDESSPIC 190 (483)
Q Consensus 115 ~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~-~~~~~f~~~~~l~~~i~rla~---~~g~~i~~~~P~~ 190 (483)
.++++++++. .+||||+.-.-+.+++-+|++. +....-.+.++...+++-+.+ ...++.=+.+--+
T Consensus 3 ~~ll~~~~~~----------~aSD~HL~aG~PP~~R~~G~~~~~~~~~plt~~~~~~l~~~~l~~th~~~~~~f~~~~E~ 72 (350)
T TIGR01420 3 EELLREAVKK----------GASDIHLSAGLPPAIRIDGDLRTRIGFEPLTPEDTQKLLREILSSTHEKQREEFEENGEL 72 (350)
T ss_pred HHHHHHHHHC----------CCCEEEEECCCCEEEEECCCEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 7889999848----------997488503774037547831034467898989999999986384565777505650664
Q ss_pred EE--EECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 79--8237620345315535788168884057654667888650699889999989862258848998188888889999
Q gi|254780724|r 191 DA--RLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLN 268 (483)
Q Consensus 191 d~--~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~ 268 (483)
|. .+++-+|+.+...- ...++.+++|..+.+..+++.| |...+- +...+-+++|.|||+|||||||||+|.
T Consensus 73 Dfs~~~~~~~RfRvN~f~-QRg~~a~vlR~ip~~Ip~fe~L---GLP~~v---~~~~a~~~~GLiLVTGPTGSGKSTTlA 145 (350)
T TIGR01420 73 DFSFSLPGLARFRVNAFK-QRGGVALVLRLIPSKIPTFEEL---GLPRPV---LRELAERPRGLILVTGPTGSGKSTTLA 145 (350)
T ss_pred CEEEEECCCCEEEEHHHH-HCCHHHHHHHHCCCCCCCHHHC---CCCHHH---HHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 446630673221220323-5000642323115346216663---798789---999983669938987688986789999
Q ss_pred HHHHHCCCC--CCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-HHHHH
Q ss_conf 998303876--767999642131256787567787416666530001899998752059988996575879999-99999
Q gi|254780724|r 269 CLTRYIDKD--ERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL-DLLQA 345 (483)
Q Consensus 269 al~~~i~~~--~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-~~l~A 345 (483)
||..||+.+ ..|+|||||+||-.++...+- . +..+ |....+|.++||+|||++||+|+|||+||.||. .+|.|
T Consensus 146 smIDyIN~~~~~HIiTIEDPIEyvh~~~~sli--~-QREv-G~DT~sF~~ALraALReDPDvILiGE~RD~ET~~~AL~A 221 (350)
T TIGR01420 146 SMIDYINKNKAGHIITIEDPIEYVHKNKRSLI--N-QREV-GLDTLSFANALRAALREDPDVILIGEMRDLETVELALTA 221 (350)
T ss_pred HHHHHHHCCCCCCCEEEECCEEEEECCCEEEE--E-CCCC-CCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 99978740388882563177314104770245--4-3624-675457999976841028988998255627899999987
Q ss_pred HHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC--CCCCEEEEEEEEEE
Q ss_conf 873970102000478888899999975530467999899999997423588999876--99987899999998
Q gi|254780724|r 346 MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL--RDGSRRITNICEIV 416 (483)
Q Consensus 346 ~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~--~dG~Rrv~~I~Ev~ 416 (483)
+.|||+ ||+|||+|||.+++.|+.++.-.. -.+.++.++|.++-=||-+... .+|.=|| -+.||.
T Consensus 222 AETGHL-V~gTLHTnsA~~ti~RIid~FP~~----~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv-~~~Eil 288 (350)
T TIGR01420 222 AETGHL-VFGTLHTNSAAKTIERIIDVFPAE----EQEQIRTQLAESLVAVISQRLLPKKNGGGRV-LAVEIL 288 (350)
T ss_pred HHHCCH-HHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHCCCCEEECCCCCEE-EEEEEE
T ss_conf 421315-676666423888767774259775----6689999998767877000542233896258-888752
No 15
>PRK10436 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=316.96 Aligned_cols=266 Identities=21% Similarity=0.295 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCC---EEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 896789999999999885656335885883321799856991---89982783897176207989999999999998098
Q gi|254780724|r 105 MSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNK---VFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGR 181 (483)
Q Consensus 105 ~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~---I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~ 181 (483)
.+.....+|++.++.+++..| .||||+.+..+ |.++.+|.+..... ...+....++.|+...++.
T Consensus 76 ~~~~piv~lvn~il~~Ai~~~----------ASDIHieP~~~~~~Ir~RiDG~L~~~~~--l~~~~~~~l~sriK~la~l 143 (461)
T PRK10436 76 EGDQPVAQLLNQTLRSALQKR----------ASDIHFEPAQNHYRIRLRIDGVLHPLPD--PSPETGAALTARLKVLGNL 143 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHCC----------CCEEEEEECCCCEEEEEEECCEEEEECC--CCHHHHHHHHHHHHHHCCC
T ss_conf 677779999999999999759----------9658998469818999986899988515--8987899999999997499
Q ss_pred CCCCCCCEEEEEEC---CCCEEEE--ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 12433877879823---7620345--315535788168884057654667888650699889999989862258848998
Q gi|254780724|r 182 RVDESSPICDARLL---DGSRVNV--IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLIS 256 (483)
Q Consensus 182 ~i~~~~P~~d~~lp---dg~Ri~~--~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVs 256 (483)
.+++.+-.+|+++. +|..+.. ..-| +.+|.+++||.+..... ..+|.++|+.+.....|..++.++.|.|||+
T Consensus 144 diae~r~PQdGr~~~~~~~~~id~Rvst~P-t~~GE~ivlRlL~~~~~-~~~L~~LG~~~~~~~~~~~~~~~p~GliLvt 221 (461)
T PRK10436 144 DIAEHRLPQDGQFTVELAGNAYSFRIATLP-CRGGEKVVLRLLQQVQQ-TLDLETLGMTPAQLAQFRQALQQPQGLVLVT 221 (461)
T ss_pred CHHHCCCCCCCCEEEEECCEEEEEEEEECC-CCCCCEEEEEEECCCCC-CCCHHHHCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 812055687782799889968999999334-67887789995246656-6888784889999999999983899779997
Q ss_pred CCCCCCHHHHHHHHHHHC-CCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 188888889999998303-8767679996421312567875677874166665300018999987520599889965758
Q gi|254780724|r 257 GGTGSGKTTLLNCLTRYI-DKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 257 G~TGSGKTT~L~al~~~i-~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
|||||||||+||++++++ .++.+|+|||||+|+.+++.++++. +.+.+.||+.++|++|||+||+|||||+|
T Consensus 222 GPTGSGKTTTLya~L~~l~~~~~~I~TiEDPVE~~l~gi~Q~~v-------n~~~g~tfa~~lrs~LRqDPDVImvGEIR 294 (461)
T PRK10436 222 GPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQI-------HPRAGLTFQRVLRALLRQDPDVIMVGEIR 294 (461)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEE-------CCCCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 89999569999999974346771699960774355467545231-------32213139999999874699999865778
Q ss_pred CHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 79999-99999873970102000478888899999975530467999899999997423588999876
Q gi|254780724|r 336 GPEVL-DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 336 g~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
|.|++ .+++|+.|||. ++||+||||+.+++.||.+| +++.. ++++++..||.+.-.
T Consensus 295 D~eTA~~Ai~AAlTGHL-VlsTlHtnda~~ai~RL~~m------gi~~~----lla~~L~~ViaQRLV 351 (461)
T PRK10436 295 DGETAEIAIKAAQTGHL-VLSTLHTNSTSETLIRLQQM------GVARW----MISSALTLVIAQRLV 351 (461)
T ss_pred CHHHHHHHHHHHHHCCE-EEEEECCCCHHHHHHHHHHC------CCCHH----HHHHHHHHEEECCCC
T ss_conf 89999999999971984-88986269778899999983------99888----999866334775034
No 16
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.3e-37 Score=277.77 Aligned_cols=253 Identities=25% Similarity=0.368 Sum_probs=201.9
Q ss_pred CCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE--ECCCCEEEEECCCCCCC
Q ss_conf 8332179985699189982783897176207989999999999998098124338778798--23762034531553578
Q gi|254780724|r 133 RDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDAR--LLDGSRVNVIIPPLALD 210 (483)
Q Consensus 133 D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~--lpdg~Ri~~~~~p~s~~ 210 (483)
+..+||||+-..-..+++.+|.+...+.+-.+.+++.+++..+.+...++.-+.+--+|.. +|+-.|+.+...- ...
T Consensus 14 ~~~aSDiHL~~G~pp~~Ri~G~l~~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~-qr~ 92 (353)
T COG2805 14 KNGASDLHLSAGLPPRIRIDGELRPINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPGVARFRVNAFK-QRG 92 (353)
T ss_pred HCCCCCHHHCCCCCCEEEECCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEECCCCCEEEEEHHH-HCC
T ss_conf 5698701112699935975680655689989989999999998597889999871251478862775168864555-468
Q ss_pred CCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEECCHH
Q ss_conf 8168884057654667888650699889999989862258848998188888889999998303876--76799964213
Q gi|254780724|r 211 GPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCEDTAE 288 (483)
Q Consensus 211 G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIED~~E 288 (483)
|.++++|..+....++++| |. ++. +..+|-.++|.|||+|||||||||+|.|+.++|+.+ ..|+|||||+|
T Consensus 93 ~~a~vlR~Ip~~i~~~e~L---gl-P~i---~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE 165 (353)
T COG2805 93 GYALVLRLIPSKIPTLEEL---GL-PPI---VRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIE 165 (353)
T ss_pred CCEEEEECCCCCCCCHHHC---CC-CHH---HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 8379976167668998781---99-779---9999828796699867999967879999999984147751687237468
Q ss_pred HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHH
Q ss_conf 1256787567787416666530001899998752059988996575879999-999998739701020004788888999
Q gi|254780724|r 289 LQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFG 367 (483)
Q Consensus 289 l~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~ 367 (483)
+-....... . .+..+ |....+|+++||+|||++||+|+|||+||.|+. .++.|+.|||. ||+|+|+|||..++.
T Consensus 166 ~vh~skksl--I-~QREv-G~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHL-V~~TLHT~sA~~ti~ 240 (353)
T COG2805 166 YVHESKKSL--I-NQREV-GRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHL-VFGTLHTNSAAKTID 240 (353)
T ss_pred HHHCCHHHH--H-HHHHH-CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHH
T ss_conf 650432766--6-68774-542788999999986029997998213469999999989860887-777402363777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 99975530467999899999997423588999876
Q gi|254780724|r 368 RMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 368 RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
|+.++.... ..+.++.++++++--|+-++..
T Consensus 241 RiidvFp~~----ek~~vR~~La~sL~aVisQ~L~ 271 (353)
T COG2805 241 RIIDVFPAE----EKDQVRSQLAESLRAVISQRLL 271 (353)
T ss_pred HHHHHCCHH----HHHHHHHHHHHHHHHHHHHHCE
T ss_conf 988738863----4679999999999999763310
No 17
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=100.00 E-value=3.2e-37 Score=278.64 Aligned_cols=276 Identities=26% Similarity=0.371 Sum_probs=208.7
Q ss_pred HHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHH-------HCCCCCCCCCEEE----EEE--CC
Q ss_conf 8588332179985699189982783897176207989999999999998-------0981243387787----982--37
Q gi|254780724|r 130 LIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQ-------VGRRVDESSPICD----ARL--LD 196 (483)
Q Consensus 130 ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~-------~g~~i~~~~P~~d----~~l--pd 196 (483)
+-...+||||++.|.++|||+++|+......--..+..+.++++.+.+. +|+.+|..-- ++ +++ .-
T Consensus 18 hC~r~~vSDI~LqGG~~i~V~r~GR~~~~s~fpL~~~~l~~l~D~lFg~ei~~~v~sg~~vdraiQ-l~GD~~GryGL~R 96 (374)
T TIGR02525 18 HCERHEVSDIHLQGGSPIVVERHGRKVRASSFPLEDSELERLVDELFGPEIKPTVKSGRPVDRAIQ-LEGDENGRYGLKR 96 (374)
T ss_pred HHCCCCCCCEEECCCCEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE-ECCCCCCCCCCCC
T ss_conf 111686340352176855774446610134477850579998766507320010247875572001-0266556413356
Q ss_pred CC----EEEEECCCCCC--CCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 62----03453155357--8816888405765466788865069988999998986225884899818888888999999
Q gi|254780724|r 197 GS----RVNVIIPPLAL--DGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCL 270 (483)
Q Consensus 197 g~----Ri~~~~~p~s~--~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al 270 (483)
|. |.|.+...... .-.++|+|..+.....| .++|.-+ +++..+....|.=||||+|||||+|++.|+
T Consensus 97 Ger~RfR~nf~QAt~~~~~~AislTlRvips~IP~L---~~MgiE~----DLf~alLP~~GLGLiCG~TGSGKSTl~Aai 169 (374)
T TIGR02525 97 GERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDL---KKMGIEP----DLFEALLPKAGLGLICGETGSGKSTLAAAI 169 (374)
T ss_pred CCEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCH---HHCCCCH----HHHHHHCCCCCCEEECCCCCCCHHHHHHHH
T ss_conf 761200010004415554444434420055666513---2347876----899870500378022177897289999999
Q ss_pred HHHC---CCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCHHHHH-HHHH
Q ss_conf 8303---87676799964213125678756778741666653000189999875-20599889965758799999-9999
Q gi|254780724|r 271 TRYI---DKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC-LRMRPERIILGEVRGPEVLD-LLQA 345 (483)
Q Consensus 271 ~~~i---~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a-LR~~PD~IiVGEiRg~Ea~~-~l~A 345 (483)
..|+ .|+.||||+|||+||.|..++++-....++.. |+.--+|+..++.+ ||-.|++|-|||+|+.|+++ +++|
T Consensus 170 Y~~~l~t~pdRKivT~EDPvEY~L~~~~~~l~ap~Q~~I-GRDv~sFa~Glr~~GlRR~P~IiGvGE~rd~et~~AAV~A 248 (374)
T TIGR02525 170 YRHCLETYPDRKIVTYEDPVEYILGSPDDLLPAPAQSEI-GRDVESFAEGLRLAGLRRAPKIIGVGEIRDLETFQAAVLA 248 (374)
T ss_pred HHHHCCCCCCCEEEEEECCEEEECCCCCCHHCCCCCHHC-CCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 998507488970798657721231885201027630110-6876788623201245348853441022556789999985
Q ss_pred HHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEE--ECCCCCEEEEEEEEEEEEECC
Q ss_conf 8739701020004788888999999755304679998999999974235889998--769998789999999841498
Q gi|254780724|r 346 MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQ--RLRDGSRRITNICEIVGMEGN 421 (483)
Q Consensus 346 ~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~--r~~dG~Rrv~~I~Ev~g~e~~ 421 (483)
.+|||. +|+|+|+.||-+|+.|+..|+ |..+ .+++.-.+-+.+.+||-++ |..||+|+- |-|.+-++++
T Consensus 249 G~~GHf-~LGTLH~~spGeA~sR~l~~~---P~e~-Re~~A~dlLs~l~yiiVQ~Ll~T~DG~RqA--VREYiv~dd~ 319 (374)
T TIGR02525 249 GQSGHF-CLGTLHVKSPGEAISRCLQMV---PPEM-REAIAFDLLSVLQYIIVQKLLRTTDGKRQA--VREYIVFDDE 319 (374)
T ss_pred CCCCCC-CCCCCCCCCCHHHHHHHHHCC---CCHH-HHHHHHHHHHHHCEEEEEEEECCCCCCEEE--EEEEEEECHH
T ss_conf 156753-100113247324788875237---8225-899999998762112354331168997358--8988887525
No 18
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=100.00 E-value=7.7e-35 Score=262.03 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=163.2
Q ss_pred HHHHHCCCCCCCCCEEEEEEC---CCCEEEE--ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 999809812433877879823---7620345--31553578816888405765466788865069988999998986225
Q gi|254780724|r 175 IVNQVGRRVDESSPICDARLL---DGSRVNV--IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRI 249 (483)
Q Consensus 175 la~~~g~~i~~~~P~~d~~lp---dg~Ri~~--~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~ 249 (483)
|...+|..+++.+-.+|+++. ++..+.+ ..-| +.+|.+++||.++... ...+|.++|+.......+..++-.+
T Consensus 2 iK~~a~ldi~e~r~pQdG~~~~~~~~~~~~~Rvst~p-~~~Ge~vvlRll~~~~-~~~~L~~LG~~~~~~~~l~~~~~~~ 79 (264)
T cd01129 2 LKILAALDIAERRKPQDGRIRLKLKGREIDLRVSTLP-TIYGESVVLRILDKKN-QILDLEKLGLKPENLEIFRKLLEKP 79 (264)
T ss_pred EEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECC-CCCCCEEEEEEECCCC-CCCCHHHHCCCHHHHHHHHHHHHCC
T ss_conf 4687799861335884881899989989999999475-7999769999757766-6579879579999999999997089
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 884899818888888999999830387-6767999642131256787567787416666530001899998752059988
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPER 328 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~ 328 (483)
.|.|||+|||||||||+|++++.+++. ..+|+|||||+|+.+++.++++. +.+.+.+|.++++++||++||+
T Consensus 80 ~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdPvE~~~~~~~Q~~v-------~~~~g~~~~~~lr~~LR~dPDv 152 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQV-------NEKAGLTFARGLRAILRQDPDI 152 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEE-------CCCCCCCHHHHHHHHHCCCCCE
T ss_conf 988999789999779999999986436885089986763145688735761-------6666878999999985569998
Q ss_pred EEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 996575879999-9999987397010200047888889999997553046799989999999742358899987
Q gi|254780724|r 329 IILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQR 401 (483)
Q Consensus 329 IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r 401 (483)
|+||||||.|++ .+++|++|||. ++||+||||+.+++.||.+| +++... +++++..||.++-
T Consensus 153 i~igEiRD~eta~~a~~aa~tGhl-V~tTlHa~~a~~~i~RL~~l------gv~~~~----l~~~l~~vi~QRL 215 (264)
T cd01129 153 IMVGEIRDAETAEIAVQAALTGHL-VLSTLHTNDAPGAITRLLDM------GIESYL----LSSALIGVIAQRL 215 (264)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCE-EEEEECCCCHHHHHHHHHHC------CCCHHH----HHHHHHHHHHHHH
T ss_conf 874688999999999999970996-99997039999999999982------999899----9999999998642
No 19
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=100.00 E-value=5.4e-33 Score=249.12 Aligned_cols=144 Identities=31% Similarity=0.499 Sum_probs=121.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8848998188888889999998303876--76799964213125678756778741666653000189999875205998
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPE 327 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD 327 (483)
+|.|||+|+|||||||+|++++.+++.+ .+|+|||||+|+.+++.+.+..+. . . |....+|.++++++||++||
T Consensus 1 ~GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~--e-~-g~~~~sf~~~lr~aLR~~PD 76 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQR--E-V-GLDTLSFENALKAALRQDPD 76 (198)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEEC--C-C-CCCCCCHHHHHHHHHHHCCC
T ss_conf 938999899999799999999985363788369996473775236764488733--3-0-78863799999999854888
Q ss_pred EEEECCCCCHHHH-HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 8996575879999-99999873970102000478888899999975530467999899999997423588999876
Q gi|254780724|r 328 RIILGEVRGPEVL-DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 328 ~IiVGEiRg~Ea~-~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
+|+|||+||.|++ .+++|++|||. |++|+||||+.+++.||.+|+.. -..+.++.++++++-.||.+...
T Consensus 77 vI~vGEiRd~et~~~al~aa~TGHl-V~sTlHa~sa~~ai~Rl~~~~~~----~~~~~~~~~la~~l~~vi~QrLv 147 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAETGHL-VMSTLHTNSAAKTIDRIIDVFPA----EERDQIRTQLAESLKAVISQQLL 147 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 5752777899999999999971993-99976759899999999996888----67999999999999999422015
No 20
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.96 E-value=1.5e-27 Score=211.01 Aligned_cols=234 Identities=26% Similarity=0.362 Sum_probs=175.0
Q ss_pred CHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCE-EEEEECCCC--EEEE
Q ss_conf 358858833217998569918998278389717620798999999999999809-812433877-879823762--0345
Q gi|254780724|r 127 LQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG-RRVDESSPI-CDARLLDGS--RVNV 202 (483)
Q Consensus 127 L~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g-~~i~~~~P~-~d~~lpdg~--Ri~~ 202 (483)
+-.+|.....||+.|...-+.-.+.+|+....+-.-.+.++...++-.+-+..- ..|.+.+-. .....+++. |+++
T Consensus 10 lL~~m~~~~aSDlfIt~g~Ppsmkv~g~~tpi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnA 89 (375)
T COG5008 10 LLDLMVEQKASDLFITAGFPPSMKVDGKLTPITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNA 89 (375)
T ss_pred HHHHHHHCCCCCEEEECCCCCCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEH
T ss_conf 99999856777458974899636655724115788887899999999986499999987526522799748886077406
Q ss_pred ECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCE
Q ss_conf 315535788168884057654667888650699889999989862258848998188888889999998303876--767
Q gi|254780724|r 203 IIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERI 280 (483)
Q Consensus 203 ~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~ri 280 (483)
.+ ...-+-+++|+......++++|.. ++ -+..+++..|+.++|.|+|||||+|+|.++++|-..+ -.|
T Consensus 90 f~---qr~~~g~VlRrI~~~IPt~eeL~L----Pe---vlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 90 FY---QRGLAGLVLRRIETKIPTFEELKL----PE---VLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred HH---HCCCCEEEEEEECCCCCCHHHCCC----CH---HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCE
T ss_conf 66---477740156440115884776198----48---899752043745999877888840168998601346887735
Q ss_pred EEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHCCCCEEEHHHCC
Q ss_conf 9996421312567875677874166665300018999987520599889965758799999-999987397010200047
Q gi|254780724|r 281 VTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLD-LLQAMNTGHDGSMGTIHA 359 (483)
Q Consensus 281 vtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~l~A~~TGH~G~ltTlHa 359 (483)
+|||||+|+-..|.+.+--+-. + |....++.-+++++|||.||+|++||||+.|+++ +++-+.|||. ||+|+||
T Consensus 160 iTIEDPIEfih~h~~CIvTQRE---v-GvDTesw~~AlkNtlRQaPDvI~IGEvRsretMeyAi~fAeTGHL-cmaTLHA 234 (375)
T COG5008 160 ITIEDPIEFIHKHKRCIVTQRE---V-GVDTESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHL-CMATLHA 234 (375)
T ss_pred EEECCHHHHHHCCCCEEEEEEE---E-CCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 8823819987415641587334---1-446188999999877518986999730437679999988732865-8998505
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8888899999975530
Q gi|254780724|r 360 NNARESFGRMEAMIAM 375 (483)
Q Consensus 360 ~s~~~ai~RL~~m~~~ 375 (483)
|++..|+.|+.+.+-.
T Consensus 235 N~anQaleRIinffP~ 250 (375)
T COG5008 235 NNANQALERIINFFPE 250 (375)
T ss_pred CCCHHHHHHHHHHCCH
T ss_conf 7715789999863968
No 21
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=99.90 E-value=5.1e-23 Score=179.44 Aligned_cols=254 Identities=24% Similarity=0.345 Sum_probs=194.9
Q ss_pred CCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHC-------CCCC---CCCCEEEEEECCCCEEEEE
Q ss_conf 33217998569918998278389717620798999999999999809-------8124---3387787982376203453
Q gi|254780724|r 134 DDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG-------RRVD---ESSPICDARLLDGSRVNVI 203 (483)
Q Consensus 134 ~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g-------~~i~---~~~P~~d~~lpdg~Ri~~~ 203 (483)
-..+||.|.....|+.|..|++.....+-.+..++.++++.+...++ +.|| +-+|.-..++ ..|+|.+
T Consensus 16 l~asditiqtG~~~~aevyGrl~~~t~r~lsn~e~~dl~n~iyGPn~ttq~~~G~didthye~rPnr~~r~--ryr~n~t 93 (358)
T TIGR02524 16 LNASDITIQTGRAVLAEVYGRLLKLTRRRLSNAELSDLLNAIYGPNATTQLLRGKDIDTHYEIRPNRNVRY--RYRVNAT 93 (358)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEE--EEEEECE
T ss_conf 17430242245157789878999876444312247778875218752112320452221000046777504--6787040
Q ss_pred CCCC-CCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCC
Q ss_conf 1553-5788168884057654667888650699889999989862258848998188888889999998303----8767
Q gi|254780724|r 204 IPPL-ALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI----DKDE 278 (483)
Q Consensus 204 ~~p~-s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i----~~~~ 278 (483)
.--+ ..++..++||..+..+..|..+.. + .....++.-..+.+.|+|.|||||+|+|.++...+ +.+.
T Consensus 94 ~C~v~Gh~~iqit~r~iP~~PP~ls~~~l----P---~~i~~aiaPqeG~v~~tGatGsGkstlla~iirel~e~~ds~r 166 (358)
T TIGR02524 94 ACLVEGHEAIQITLRAIPAEPPKLSKLDL----P---DAIVEAIAPQEGVVYVTGATGSGKSTLLAAIIRELIEASDSNR 166 (358)
T ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCC----H---HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 44520555047787642798874431134----1---7999851788866998626776368899999999860676564
Q ss_pred CEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHCCCCEEEHHH
Q ss_conf 679996421312567875677874166665300018999987520599889965758799999-9999873970102000
Q gi|254780724|r 279 RIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLD-LLQAMNTGHDGSMGTI 357 (483)
Q Consensus 279 rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~l~A~~TGH~G~ltTl 357 (483)
+++|.|.|.|+-.+..........++.. ++.--+|++.+|++||..|..|+|||+||.|+.. .++|+.|||+ ++||+
T Consensus 167 k~ltye~Pie~vyd~~~t~~a~v~qsei-Prhl~~fa~GvrnalrrkP~~i~vGe~rd~etisa~leaaltGhP-vyttl 244 (358)
T TIGR02524 167 KVLTYEAPIEYVYDELETISAVVSQSEI-PRHLNSFADGVRNALRRKPRLILVGEARDAETISAVLEAALTGHP-VYTTL 244 (358)
T ss_pred EEEEECCCHHHHHHCCCCCEEEEEHHHC-CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC-CEEEC
T ss_conf 1464226323322110100112220002-122567888888875228856898336441579999988743884-00100
Q ss_pred CCCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 4788888999999755304-679998999999974235889998769
Q gi|254780724|r 358 HANNARESFGRMEAMIAMG-GFTLPSQMVREIITSSLDVIVQTQRLR 403 (483)
Q Consensus 358 Ha~s~~~ai~RL~~m~~~~-~~~~~~~~~~~~ia~avd~iV~~~r~~ 403 (483)
|+....+++.||+.-.... -.+...+ |..++-++|..+..+
T Consensus 245 h~sGvaet~rrlv~sf~~eer~Grtid-----i~et~rl~iWq~lvP 286 (358)
T TIGR02524 245 HSSGVAETIRRLVTSFSAEERLGRTID-----ILETLRLIIWQKLVP 286 (358)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHH-----HHHHHHHHHHHHHCC
T ss_conf 000268999998622552100121678-----999999998763145
No 22
>PRK13764 ATPase; Provisional
Probab=99.79 E-value=4e-17 Score=138.23 Aligned_cols=281 Identities=20% Similarity=0.343 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-HHHCCCC--------CHHHHCCCCCCEEEEECCCCEEEEEC--CEE--
Q ss_conf 999999999741-877896789999999999-8856563--------35885883321799856991899827--838--
Q gi|254780724|r 90 IATLMNEIVSVK-KITMSLDEQLDLFEDLCN-DILGYGP--------LQPLIARDDIADIMVNGSNKVFIEVN--GKT-- 155 (483)
Q Consensus 90 i~~~i~~~~~~~-~~~~~~~~~~~l~~~i~~-e~~glGp--------L~~ll~D~~VsdI~ing~~~I~ve~~--G~~-- 155 (483)
|..++.++..+. ...++.+..+..+..... +..=++| |+.|++ ++..-+|.--.-.-+..++ |.+
T Consensus 91 IDa~IR~vA~e~~A~lvTsD~VQ~~vA~AkGI~V~yl~p~~~~~~L~ie~fFd-e~TmSVHLKe~~~P~AKkG~pG~~~l 169 (605)
T PRK13764 91 IDAMIRDVAKENGATLVTSDRVQAEVARAKGIDVIYLKPEEEFEPLAIEEFFD-EDTMSVHLKEGVPPMAKKGRPGEWKL 169 (605)
T ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCC-CCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 78999999998099999660899999997396499956756667623888568-87069984389974002688884799
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCC----CCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 971762079899999999999980981----2433877879823762034531553578816888405765466788865
Q gi|254780724|r 156 VETGINFRDNEQLLSVCQRIVNQVGRR----VDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVS 231 (483)
Q Consensus 156 ~~~~~~f~~~~~l~~~i~rla~~~g~~----i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~ 231 (483)
......-.+..+|..+++.|...+.+. +.-..|-...---...|+.++.||.| +|.-++.-+ +...++|+++..
T Consensus 170 v~i~d~plt~~el~~ia~eIle~a~~~~~~fiEi~~~G~tvvQ~~~~RI~i~rPPfS-d~~EITaVR-Pv~~~sledY~l 247 (605)
T PRK13764 170 VKLRDEPLTEYELEEIAREILERAKRDPDGFIEIERPGATVVQLGNYRIVIARPPFS-DGIEITAVR-PIVKLSLEDYNL 247 (605)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCEEEEEECCCCC-CCEEEEEEE-EEEECCHHHCCC
T ss_conf 993375599999999999999987148995599814996799866789998459987-763799971-017804777167
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE-EEECCHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 06998899999898622588489981888888899999983038767679-99642131256787567787416666530
Q gi|254780724|r 232 FGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIV-TCEDTAELQLQQPHVVRLETRPPNIEGEG 310 (483)
Q Consensus 232 ~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~riv-tIED~~El~l~~~~~v~~~~~~~~~e~~~ 310 (483)
++ .+..-+......|||+|+.|||||||..||..|.....++| |+|.|+.|+++..- |+.+..+|.
T Consensus 248 ----~~---~l~~Rl~~~a~GilIaG~PGaGKsTfaqalA~~~~~~g~iVKTmEsPRDl~v~~~i-----TQy~~l~g~- 314 (605)
T PRK13764 248 ----SE---KLKERLEERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEI-----TQYTPLEGS- 314 (605)
T ss_pred ----CH---HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC-----CEECCCCCC-
T ss_conf ----89---99998873366499977999977899999999998479789832486236689542-----052435688-
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-HHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 0018999987520599889965758799999999-987397010200047888889999997553046799989999999
Q gi|254780724|r 311 EITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQ-AMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREII 389 (483)
Q Consensus 311 ~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~-A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~i 389 (483)
|...-...|--|||+.|..|+|..+-+..+- --+.| -|.++-+||++|-||+.|+..-+-.+ .|
T Consensus 315 ---~e~t~diLlLvRPDytifDE~R~~~Df~ifaD~RlaG-vGmvGvvHA~~~iDAiQRfigRVELG-----------~I 379 (605)
T PRK13764 315 ---MEETADILLLVRPDYTIFDEMRKTEDFEVFADMRLAG-VGMVGVVHATSPIDAIQRFIGRVELG-----------MI 379 (605)
T ss_pred ---HHHHEEEEEEECCCCEEEEEHHCCCCCCCEEHHHHCC-CCEEEEEECCCHHHHHHHHHCCCHHC-----------CC
T ss_conf ---7773006788548826640020433300001010005-74476885288789999873301105-----------64
Q ss_pred HHHCCEEEEEEE
Q ss_conf 742358899987
Q gi|254780724|r 390 TSSLDVIVQTQR 401 (483)
Q Consensus 390 a~avd~iV~~~r 401 (483)
-+-+|-|||++.
T Consensus 380 PqivDTVIfI~~ 391 (605)
T PRK13764 380 PQIVDTVIFIKD 391 (605)
T ss_pred CHHEEEEEEEEC
T ss_conf 214048999807
No 23
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=99.69 E-value=6.3e-15 Score=122.90 Aligned_cols=291 Identities=20% Similarity=0.315 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-HHHCCCC--------CHHHHCCCCCCEEEEE-CCCCEEEE-
Q ss_conf 8999999999999999741-877896789999999999-8856563--------3588588332179985-69918998-
Q gi|254780724|r 83 SQSARDEIATLMNEIVSVK-KITMSLDEQLDLFEDLCN-DILGYGP--------LQPLIARDDIADIMVN-GSNKVFIE- 150 (483)
Q Consensus 83 ~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~l~~~i~~-e~~glGp--------L~~ll~D~~VsdI~in-g~~~I~ve- 150 (483)
..++.+.+++. ..++ ...++.+..+.-+..... +..=++| |+.|+++...| +|+- |..+ +..
T Consensus 92 ~GEid~miR~v----A~e~~a~lVTsD~vQ~~va~a~Giev~yl~p~~~~~~~~ie~fFd~~TMS-vHLKeg~~P-~aK~ 165 (604)
T COG1855 92 SGEIDAMIREV----ALEYGATLVTSDRVQRDVARAKGIEVEYLEPVEEPEEVRIEEFFDEETMS-VHLKEGVPP-MAKK 165 (604)
T ss_pred CCCHHHHHHHH----HHHHCCEEEECHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHHCCCCCEE-EEECCCCCC-CCCC
T ss_conf 65378999999----99839689935488888888618169995786643221087755886158-830179996-2346
Q ss_pred -ECCE--EEECCCCCCCHHHHHHHHHHHHHHHCCCCC----CCCC-EEEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf -2783--897176207989999999999998098124----3387-7879823762034531553578816888405765
Q gi|254780724|r 151 -VNGK--TVETGINFRDNEQLLSVCQRIVNQVGRRVD----ESSP-ICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKD 222 (483)
Q Consensus 151 -~~G~--~~~~~~~f~~~~~l~~~i~rla~~~g~~i~----~~~P-~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~ 222 (483)
+-|. +......-.+..++.++++.|.....+..+ -..+ ..-..|. ..|+.+..||.|.. .-++.-++ ..
T Consensus 166 GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlr-n~RIvIarPPfSd~-~EITavRP-vv 242 (604)
T COG1855 166 GKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLR-NYRIVIARPPFSDR-WEITAVRP-VV 242 (604)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEC-CEEEEEECCCCCCC-EEEEEEEE-EE
T ss_conf 99984799985776688999999999999987528676489806996699843-57999945998776-28999713-69
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE-EEECCHHHCCCCCCEEEEEE
Q ss_conf 46678886506998899999898622588489981888888899999983038767679-99642131256787567787
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIV-TCEDTAELQLQQPHVVRLET 301 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~riv-tIED~~El~l~~~~~v~~~~ 301 (483)
..+++++-. ++ .++.-+...-..|||+|+.|+|||||..||+.|....-+|| |+|.|+.|+++.. . |
T Consensus 243 k~~ledY~L----~d---kl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRDl~v~~e-I----T 310 (604)
T COG1855 243 KLSLEDYGL----SD---KLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRDLQVSPE-I----T 310 (604)
T ss_pred EEEHHHCCC----CH---HHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH-H----H
T ss_conf 960554287----98---9999988641646995699997468999999999866968863247513568866-6----3
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-HHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 41666653000189999875205998899657587999999999-87397010200047888889999997553046799
Q gi|254780724|r 302 RPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQA-MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTL 380 (483)
Q Consensus 302 ~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A-~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~ 380 (483)
+.+..++. |...-...|--||||-|..|+|..+-+.++-- -+-| -|.++-+||.+|-||+.|+..-+-.+-
T Consensus 311 QYs~l~g~----me~t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAG-VGMVGVVHATrpIDAiQR~igRVELG~--- 382 (604)
T COG1855 311 QYSPLEGD----MEKTADILLLVRPDYTIYDEMRKTEDFQVYADLRLAG-VGMVGVVHATRPIDAIQRFIGRVELGM--- 382 (604)
T ss_pred HCCCCCCC----HHHHCCEEEEECCCCEEHHHHHCCCCEEEEEEEECCC-CCEEEEEECCCHHHHHHHHHCCEEECC---
T ss_conf 20644564----5552337999658845103341566616766500115-754768961780589998644063146---
Q ss_pred CHHHHHHHHHHHCCEEEEEEECCCCC-EEEEEEE
Q ss_conf 98999999974235889998769998-7899999
Q gi|254780724|r 381 PSQMVREIITSSLDVIVQTQRLRDGS-RRITNIC 413 (483)
Q Consensus 381 ~~~~~~~~ia~avd~iV~~~r~~dG~-Rrv~~I~ 413 (483)
|-+-+|-||+++ +|. .+|-+++
T Consensus 383 --------IPqIvDTVIfI~---~G~V~kVy~ls 405 (604)
T COG1855 383 --------IPQIVDTVIFIK---DGEVAKVYELS 405 (604)
T ss_pred --------CCCCEEEEEEEE---CCEEEEEEEEE
T ss_conf --------641226899981---88188999999
No 24
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=99.42 E-value=2.6e-11 Score=97.61 Aligned_cols=236 Identities=20% Similarity=0.217 Sum_probs=156.9
Q ss_pred CCEEEEECCEEEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 918998278389717--620798999999999999809812433877879823762034531553578816888405765
Q gi|254780724|r 145 NKVFIEVNGKTVETG--INFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKD 222 (483)
Q Consensus 145 ~~I~ve~~G~~~~~~--~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~ 222 (483)
..+|+...|++...+ .-..+.+++..++++|.+.+=-.|.+.--.=--++.+|+||=++...+..++..=+||....-
T Consensus 18 ~~~~~~~~Gelt~~~~~~y~~~~eD~~~~~~~~S~ySlYA~EeElk~GYITi~GGHRVGlaG~~V~E~~~vk~ik~v~S~ 97 (282)
T TIGR02858 18 EEVFVTTDGELTAESDSDYIPTVEDVEAILQLISQYSLYAFEEELKQGYITIEGGHRVGLAGRCVLENGKVKTIKNVASL 97 (282)
T ss_pred CCEEECCCCEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEECEEEEECCCEEEEECCCCC
T ss_conf 52787588203205887713028889999998763124565576507607854672675303799507846451054642
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC--------CCCCEEEEECCHHHC----
Q ss_conf 46678886506998899999898622588489981888888899999983038--------767679996421312----
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYID--------KDERIVTCEDTAELQ---- 290 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~--------~~~rivtIED~~El~---- 290 (483)
.+....-+. -.++.+..||-.---.-.|-||.||+-|||||+|+=|...+. +..|+..|-+=-|..
T Consensus 98 NiRIaRE~~--G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~ 175 (282)
T TIGR02858 98 NIRIAREVL--GAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVN 175 (282)
T ss_pred CEEEEEECC--CCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCC
T ss_conf 133020005--775666887730589446788886889885104888988860785424689974699843246565458
Q ss_pred -CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCH-HHHHHHHHHHCCCCEEEHHHCCCCHHHHHH
Q ss_conf -567875677874166665300018999987520-59988996575879-999999998739701020004788888999
Q gi|254780724|r 291 -LQQPHVVRLETRPPNIEGEGEITMRDLVKNCLR-MRPERIILGEVRGP-EVLDLLQAMNTGHDGSMGTIHANNARESFG 367 (483)
Q Consensus 291 -l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR-~~PD~IiVGEiRg~-Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~ 367 (483)
.||.|+-. -|..-+ .--=++.+=-+.| |.||+|++-||=-. .+.++++|+|+|=. +++|.||++..|.-.
T Consensus 176 GvPQ~~vG~-RtDVLD-----~CPKAEGmMM~iRSMSP~Viv~DEIGr~ED~~Al~eA~naGV~-~I~TaHg~~~~Dl~k 248 (282)
T TIGR02858 176 GVPQLDVGI-RTDVLD-----GCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALNAGVS-VIATAHGRDLEDLKK 248 (282)
T ss_pred CCCCCCCCC-CEEECC-----CCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEECCCCHHHHHC
T ss_conf 824144676-067517-----8853789999997069857998148895338999998616756-887640488126650
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 99975530467999899999997423588999876
Q gi|254780724|r 368 RMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 368 RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
|=.- .+.++ ..+|+=.|-+.+-
T Consensus 249 RP~f----------k~l~e---~~~Fer~v~Ls~~ 270 (282)
T TIGR02858 249 RPVF----------KELLE---QKAFERYVVLSRR 270 (282)
T ss_pred CHHH----------HHHHH---HCCCEEEEEECCC
T ss_conf 7667----------99997---2431489983688
No 25
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=99.30 E-value=3.7e-10 Score=89.61 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=137.6
Q ss_pred CCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCE
Q ss_conf 33217998569918998278389717620798999999999999809812433877879823762034531553578816
Q gi|254780724|r 134 DDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPT 213 (483)
Q Consensus 134 ~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~ 213 (483)
.+++||.+.=....-+...|.-+..+..--..+++...++++...+--.+.+.+----....+|.|+.+........|..
T Consensus 25 ~~l~Evri~v~Rp~e~~~~~~~vyl~~~~vT~ed~~~~~~rls~ysiys~e~elr~Gyit~~ggHRVg~~g~~~~E~~~v 104 (308)
T COG3854 25 NNLEEVRIRVNRPLEAIFPGQPVYLSYIGVTKEDLQKTLNRLSGYSIYSVEEELRAGYITIRGGHRVGLAGNVTLEEGKV 104 (308)
T ss_pred CCCEEEEEECCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCEEEECCCCCCCCCCC
T ss_conf 04023676459984476189740105565418899999997356400031645416505762362565213300234652
Q ss_pred EEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHCCC------CCCEEEEECC
Q ss_conf 8884057654667888650699889999989862-25884899818888888999999830387------6767999642
Q gi|254780724|r 214 LTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIG-RIRCNVLISGGTGSGKTTLLNCLTRYIDK------DERIVTCEDT 286 (483)
Q Consensus 214 i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v-~~~~nilVsG~TGSGKTT~L~al~~~i~~------~~rivtIED~ 286 (483)
-+||-...-...... ..+|+..+ | ++.++ .+..|.|+.||.++||||+|+-+...+.. ..|++.|.+.
T Consensus 105 kt~rdI~slniRv~r-~v~Gt~~~-l---i~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 105 KTIRDISSLNIRVAR-QVFGTANP-L---IKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred CCEEEECEEEEEEHH-HHHCCCHH-H---HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 321000204554114-56556218-8---999984372246996599887077999999986315112677328997150
Q ss_pred HHHCC--CCCCEEEEEEEC--CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-HHHHHHHHHHCCCCEEEHHHCCCC
Q ss_conf 13125--678756778741--6666530001899998752059988996575879-999999998739701020004788
Q gi|254780724|r 287 AELQL--QQPHVVRLETRP--PNIEGEGEITMRDLVKNCLRMRPERIILGEVRGP-EVLDLLQAMNTGHDGSMGTIHANN 361 (483)
Q Consensus 287 ~El~l--~~~~~v~~~~~~--~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~-Ea~~~l~A~~TGH~G~ltTlHa~s 361 (483)
.|+.- .+.++...-.|. .+...+. ..|-.+++ -|.|++|||.|+-.. ++.+++.|++.|-. .++|.|.|+
T Consensus 180 sEIag~~~gvpq~~~g~R~dVld~cpk~-~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~~~GVk-li~TaHG~~ 254 (308)
T COG3854 180 SEIAGCLNGVPQHGRGRRMDVLDPCPKA-EGMMMAIR---SMSPEVIIVDEIGTEEDALAILTALHAGVK-LITTAHGNG 254 (308)
T ss_pred CHHHCCCCCCCHHHHHHHHHHCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCC
T ss_conf 0430343588603232210104656178-88999999---549957998343647779999999854858-999504411
Q ss_pred HHHHHHH
Q ss_conf 8889999
Q gi|254780724|r 362 ARESFGR 368 (483)
Q Consensus 362 ~~~ai~R 368 (483)
..+.+.|
T Consensus 255 iedl~kr 261 (308)
T COG3854 255 IEDLIKR 261 (308)
T ss_pred HHHHHCC
T ss_conf 7776508
No 26
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=98.01 E-value=3.8e-05 Score=54.55 Aligned_cols=122 Identities=23% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH
Q ss_conf 88168884057654667888650699889999989862258848998188888889999998303876767999642131
Q gi|254780724|r 210 DGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL 289 (483)
Q Consensus 210 ~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El 289 (483)
+++.+.+|-.+-.... .++...+=..+-.+++.-|-|.|++||||||+|..|..++||..=-+|+-+..=-
T Consensus 356 ~~p~L~~~~ls~~~pg---------~~~~vl~~V~L~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vtl~G~~~~ 426 (566)
T TIGR02868 356 DKPTLELRDLSVGYPG---------APPNVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVS 426 (566)
T ss_pred CCCEEEEEEEEEECCC---------CCHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHH
T ss_conf 8750789877652698---------7346542786411388608986688765789999998402899991787773243
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHHCC
Q ss_conf 256787567787416666530001899998752059988996575----879999999998739
Q gi|254780724|r 290 QLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEV----RGPEVLDLLQAMNTG 349 (483)
Q Consensus 290 ~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEi----Rg~Ea~~~l~A~~TG 349 (483)
.+++..+-+...-. +.+ ..++.+.+|.|- +|==+|+ -|.|.+.++....=+
T Consensus 427 ~~~~~evrr~v~~~---aQ~-----aHlF~ttvr~NL-rlarpdaaaGDtdeE~~~aL~~vgL~ 481 (566)
T TIGR02868 427 SLSEDEVRRRVSVF---AQD-----AHLFDTTVRENL-RLARPDAAAGDTDEELLAALERVGLA 481 (566)
T ss_pred HCCCCHHEHHEEEC---CCC-----CCCCCCCHHHHH-HHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 25731100000312---788-----621105478788-73188889988889999999971580
No 27
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.94 E-value=0.0014 Score=43.55 Aligned_cols=143 Identities=18% Similarity=0.237 Sum_probs=80.5
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEEECCHHHCCCCCCEEEE
Q ss_conf 4667888650699889999989862258--848998188888889999998303876-7679996421312567875677
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIR--CNVLISGGTGSGKTTLLNCLTRYIDKD-ERIVTCEDTAELQLQQPHVVRL 299 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~--~nilVsG~TGSGKTT~L~al~~~i~~~-~rivtIED~~El~l~~~~~v~~ 299 (483)
+-++++++.. ++....|+..++.+ -++|++||.|+||||+.++++..+-.+ .+. +.+.
T Consensus 12 P~~l~di~g~----~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~--------------~~le- 72 (318)
T PRK00440 12 PRSLDEVVGQ----EEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYWRE--------------NFLE- 72 (318)
T ss_pred CCCHHHHCCC----HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--------------CEEE-
T ss_conf 8989994196----99999999999879986698889599889999999999976986434--------------7689-
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCC------CEEEECCCCC--HHHHHH-HHHHHC--CCC-EEEH------------
Q ss_conf 874166665300018999987520599------8899657587--999999-999873--970-1020------------
Q gi|254780724|r 300 ETRPPNIEGEGEITMRDLVKNCLRMRP------ERIILGEVRG--PEVLDL-LQAMNT--GHD-GSMG------------ 355 (483)
Q Consensus 300 ~~~~~~~e~~~~~t~~~ll~~aLR~~P------D~IiVGEiRg--~Ea~~~-l~A~~T--GH~-G~lt------------ 355 (483)
...++. ++.-..++.++...+..| ..|++-|+-+ .++..+ ...|.. .+. ..++
T Consensus 73 -lnasd~--r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~~~~fil~~n~~~kii~~i~ 149 (318)
T PRK00440 73 -LNASDE--RGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQTTRFILSCNYSSKIIDPIQ 149 (318)
T ss_pred -ECCCCC--CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHH
T ss_conf -516456--67178999999999726778997389998685532255678887643105666258863488333761556
Q ss_pred ------HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf ------00478888899999975530467999899999
Q gi|254780724|r 356 ------TIHANNARESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 356 ------TlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
.+..-+..+...+|..-|...+..++.+++..
T Consensus 150 SRc~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~ 187 (318)
T PRK00440 150 SRCAVFRFSPLPKEAVIERLRYIAKNEGLEITDDALEA 187 (318)
T ss_pred HHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 55101115789999999999999998599989999999
No 28
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.94 E-value=0.00017 Score=50.08 Aligned_cols=177 Identities=14% Similarity=0.184 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEE--EEECCHHHCCCC--------------CCEEE
Q ss_conf 889999989862258848998188888889999998-3038767679--996421312567--------------87567
Q gi|254780724|r 236 TAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLT-RYIDKDERIV--TCEDTAELQLQQ--------------PHVVR 298 (483)
Q Consensus 236 ~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~-~~i~~~~riv--tIED~~El~l~~--------------~~~v~ 298 (483)
.+++-..|.--+-.+..+||.|..|+|||++..-++ ......++++ |.|.+.+-.+.+ -....
T Consensus 10 ~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~ 89 (230)
T PRK08533 10 GDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLY 89 (230)
T ss_pred CHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEE
T ss_conf 13578871789889848999868998789999999999987898699999438999999999986998179975796799
Q ss_pred EEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCC-----CCHH---HHH---HH-HHHHCCCCEEEHHHCCCCHHHH
Q ss_conf 7874166665-30001899998752059988996575-----8799---999---99-9987397010200047888889
Q gi|254780724|r 299 LETRPPNIEG-EGEITMRDLVKNCLRMRPERIILGEV-----RGPE---VLD---LL-QAMNTGHDGSMGTIHANNARES 365 (483)
Q Consensus 299 ~~~~~~~~e~-~~~~t~~~ll~~aLR~~PD~IiVGEi-----Rg~E---a~~---~l-~A~~TGH~G~ltTlHa~s~~~a 365 (483)
....+...+. .....+.+++.+.-....|+|++.-+ .+.+ +.+ .+ +.+..|.. .+.|+|..+-
T Consensus 90 i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gkt-IilTv~p~~~--- 165 (230)
T PRK08533 90 IPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKV-IILTANPKEL--- 165 (230)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCC---
T ss_conf 961343354045789999997326643798999905318851677789999999999999858988-9999563313---
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCC--EEEEEEEEEEEEECCEEEEEEEEEEEEEC
Q ss_conf 99999755304679998999999974235889998769998--78999999984149889986789875406
Q gi|254780724|r 366 FGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGS--RRITNICEIVGMEGNVIITQDLLKYEVMG 435 (483)
Q Consensus 366 i~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~--Rrv~~I~Ev~g~e~~~~~~~~if~~~~~~ 435 (483)
+.+.+ ..+.++.|++++++...-|. +|+.+|....|..+ .+++.+.|+.+.
T Consensus 166 ---------------~e~~l-~~lrs~aDv~i~L~~~~vGg~~~r~i~V~K~~ga~~---~~~~~I~F~V~p 218 (230)
T PRK08533 166 ---------------PESVL-LILRTASTILIRLEVKVFGGDLKNSAKIVKYNMAKG---SFQKIIPFRVEP 218 (230)
T ss_pred ---------------CHHHH-HHHHEEEEEEEEEEEEECCCEEEEEEEEEEECCCCC---CCCCEEEEEECC
T ss_conf ---------------62454-420410489999873610988999999998448987---778647899806
No 29
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.88 E-value=0.00028 Score=48.48 Aligned_cols=115 Identities=18% Similarity=0.333 Sum_probs=64.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCC-CCE-------------------EEEECCHHHCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 48998188888889999998303876-767-------------------9996421312567875677874166665300
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKD-ERI-------------------VTCEDTAELQLQQPHVVRLETRPPNIEGEGE 311 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~-~ri-------------------vtIED~~El~l~~~~~v~~~~~~~~~e~~~~ 311 (483)
.|+|||+.|+||||++.-++..+... .++ +++-+-.+..+.+.+.. ..+ -.|+-.
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~---~~~--~vGky~ 75 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGV---SGP--RVGKYV 75 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCC---CCC--CCCCCE
T ss_conf 989978999889999999999998679707489930212589378999999047826774440688---775--457716
Q ss_pred CH---HHHHHHHHHH---CCCCEEEECCCCCHHH-----HHHH-HHHHCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 01---8999987520---5998899657587999-----9999-99873970102000478888899999975
Q gi|254780724|r 312 IT---MRDLVKNCLR---MRPERIILGEVRGPEV-----LDLL-QAMNTGHDGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 312 ~t---~~~ll~~aLR---~~PD~IiVGEiRg~Ea-----~~~l-~A~~TGH~G~ltTlHa~s~~~ai~RL~~m 372 (483)
+. |....-.+|+ .++|.+++.||=-.|. ..++ ++++++-+ ++.|+|..+....+.++...
T Consensus 76 v~~~~fe~~~~~~L~~a~~~~dlivIDEIG~mEl~s~~F~~~v~~~l~~~~~-vl~ti~~~~~~~~v~~i~~~ 147 (168)
T pfam03266 76 VNLEEFEEIALPALRRALEEADLIIIDEIGPMELKSPKFREAIEEVLSSNKP-VLAVVHRRSDSPLVERIRRR 147 (168)
T ss_pred ECHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEEECCCCHHHHHHHCC
T ss_conf 6689999999999984066898999976314533149999999999669997-99999725898389997417
No 30
>PRK04328 hypothetical protein; Provisional
Probab=97.85 E-value=0.00014 Score=50.62 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=39.0
Q ss_pred EEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCE--EEEECCHHH
Q ss_conf 84057654667888650699889999989862258848998188888889999998-303876767--999642131
Q gi|254780724|r 216 IRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLT-RYIDKDERI--VTCEDTAEL 289 (483)
Q Consensus 216 IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~-~~i~~~~ri--vtIED~~El 289 (483)
|.|.+.-...|+.+...|. ..+..+||+|++|||||||...++ ......++. ++.|++++-
T Consensus 3 ~eRv~TGI~gLD~lL~GGl-------------p~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~ 66 (250)
T PRK04328 3 VKRVKTGIPGMDEILYGGI-------------PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQ 66 (250)
T ss_pred CCEECCCCHHHHHHCCCCC-------------CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf 4110358566787515998-------------799699998289999899999999999876997799997279999
No 31
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=5.7e-05 Score=53.32 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=69.0
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CC-------------------EEEEECCHHHCCCCCCEEEEEEECCCC
Q ss_conf 2258848998188888889999998303876-76-------------------799964213125678756778741666
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKD-ER-------------------IVTCEDTAELQLQQPHVVRLETRPPNI 306 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~-~r-------------------ivtIED~~El~l~~~~~v~~~~~~~~~ 306 (483)
.+....|.|||+.|+||||++.-+...+..+ .+ |++++.-.+..+...+. .++.
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~----~~~r-- 75 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGF----SRPR-- 75 (179)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCC----CCCC--
T ss_conf 8754599986799845899999999999855966513983114208827515999814795579888478----8762--
Q ss_pred CCCCCCHH---H----HHHHHHHHCCCCEEEECCCCCHHH-----HHHH-HHHHCCCCEEEHHHCCCCHHHHHHHHHH
Q ss_conf 65300018---9----999875205998899657587999-----9999-9987397010200047888889999997
Q gi|254780724|r 307 EGEGEITM---R----DLVKNCLRMRPERIILGEVRGPEV-----LDLL-QAMNTGHDGSMGTIHANNARESFGRMEA 371 (483)
Q Consensus 307 e~~~~~t~---~----~ll~~aLR~~PD~IiVGEiRg~Ea-----~~~l-~A~~TGH~G~ltTlHa~s~~~ai~RL~~ 371 (483)
-|+-.+.. . ..++.|+ ...|.|||.||--.|- ..++ +++.++-+ .+.|+|-+|-.-.+.++..
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~ 151 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKK 151 (179)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHH-HCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHH
T ss_conf 10478627888998689999886-3499899943363302008899999999658993-7999962567758998642
No 32
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=2.3e-05 Score=56.07 Aligned_cols=101 Identities=24% Similarity=0.380 Sum_probs=68.2
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 22588489981888888899999983038767679996421312567875677874166665300018999987520599
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP 326 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P 326 (483)
-+|-+++|++||||.|||.+.++|..++-.+++-++-=|..||+-.|.-.--.-+.|..+ ++.-.-.|-.++|.+|
T Consensus 592 ~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLiGaPPGYV----Gy~egG~Lte~vr~~P 667 (852)
T TIGR03346 592 NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYV----GYEEGGQLTEAVRRKP 667 (852)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHCCCCCCCC----CCCCCCEECHHHHHCC
T ss_conf 997458998678877689999999999855852069843044301224778558999767----7687874239898198
Q ss_pred -CEEEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf -889965758--7999999-999873970
Q gi|254780724|r 327 -ERIILGEVR--GPEVLDL-LQAMNTGHD 351 (483)
Q Consensus 327 -D~IiVGEiR--g~Ea~~~-l~A~~TGH~ 351 (483)
.+|+..||- .++.+.+ +|-+-.|+.
T Consensus 668 ysVvL~DEIEKAh~~V~~~lLQilD~G~l 696 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRL 696 (852)
T ss_pred CEEEEECCHHHHCHHHHHHHHHHHCCCEE
T ss_conf 87998530543076899999988236743
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=97.82 E-value=0.0026 Score=41.71 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=81.8
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEE
Q ss_conf 4667888650699889999989862258---8489981888888899999983038767679996421312567875677
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIR---CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRL 299 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~---~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~ 299 (483)
+-++.+++.....-..+..|+..-..++ +.+|++||.|.||||+.++++.....+ +| |++-.
T Consensus 10 Pk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~----vi----ElNAS------- 74 (403)
T PRK04195 10 PKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWE----VI----ELNAS------- 74 (403)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC----EE----EECCC-------
T ss_conf 9989998588999999999999987399657469988939987999999999984998----59----97710-------
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHC------CCCEEEECCCCCH---H---H-HHHHHHHHCCCCEEEHH----------
Q ss_conf 8741666653000189999875205------9988996575879---9---9-99999987397010200----------
Q gi|254780724|r 300 ETRPPNIEGEGEITMRDLVKNCLRM------RPERIILGEVRGP---E---V-LDLLQAMNTGHDGSMGT---------- 356 (483)
Q Consensus 300 ~~~~~~~e~~~~~t~~~ll~~aLR~------~PD~IiVGEiRg~---E---a-~~~l~A~~TGH~G~ltT---------- 356 (483)
+ .++.-.+.+.+..+... ....|++-|+=+- + + .++++-+.+...-.+++
T Consensus 75 -----D--~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~~~~~~~ 147 (403)
T PRK04195 75 -----D--QRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKAKNPIILTANDPYDPSLR 147 (403)
T ss_pred -----C--CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH
T ss_conf -----1--147899999999876068877887349996343445724447999999999854887089982684556717
Q ss_pred -H---------CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -0---------4788888999999755304679998999999
Q gi|254780724|r 357 -I---------HANNARESFGRMEAMIAMGGFTLPSQMVREI 388 (483)
Q Consensus 357 -l---------Ha~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ 388 (483)
+ ..-+..+...+|..-|...+..++.+.+...
T Consensus 148 ~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~I 189 (403)
T PRK04195 148 PLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREI 189 (403)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 799766122179949999999999999976999999999999
No 34
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.81 E-value=0.00016 Score=50.17 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=46.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC-CHHHCCCCC----CEEEEEEECCCCCCC----CCCHHHHHHHHHH
Q ss_conf 4899818888888999999830387676799964-213125678----756778741666653----0001899998752
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED-TAELQLQQP----HVVRLETRPPNIEGE----GEITMRDLVKNCL 322 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED-~~El~l~~~----~~v~~~~~~~~~e~~----~~~t~~~ll~~aL 322 (483)
-.+|+|.-||||||||+.++...+...|+..|+- -.|..+++. ..+... .. .+|- ..-++...+++..
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~-el--~~GciCc~~~~d~~~~l~~l~ 78 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELLRETGAEIV-EL--NNGCICCTIREDLSMVLEALL 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEE-EE--CCCCCCCCCCHHHHHHHHHHH
T ss_conf 699934887889999999998444898479999336530207999870696189-97--488664543336999999998
Q ss_pred H---CCCCEEEECCCCC
Q ss_conf 0---5998899657587
Q gi|254780724|r 323 R---MRPERIILGEVRG 336 (483)
Q Consensus 323 R---~~PD~IiVGEiRg 336 (483)
. .+||+|+| |.-|
T Consensus 79 ~~~~~~~d~iiI-E~sG 94 (174)
T pfam02492 79 ELKLPRLDLLFI-ETTG 94 (174)
T ss_pred HCCCCCCCEEEE-ECCC
T ss_conf 557899999999-5876
No 35
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.80 E-value=8.5e-05 Score=52.15 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=65.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHCC----------CCCCEEEEEEECCCCCCCCC
Q ss_conf 9862258848998188888889999998303876767999642--13125----------67875677874166665300
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQL----------QQPHVVRLETRPPNIEGEGE 311 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~l----------~~~~~v~~~~~~~~~e~~~~ 311 (483)
.+-++++..+.|.|++||||||+++.|+.+.+|..--+.+... .++.. +|..+....+-..|. =+++
T Consensus 22 ~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNi-LSGG 100 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-LSGG 100 (173)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHC-CCHH
T ss_conf 999859999999999998099999999666667999899999993328998984208999088836777589976-7699
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCC---CHHHHH-H---HHHH-HCCCCEEEHHHC
Q ss_conf 018999987520599889965758---799999-9---9998-739701020004
Q gi|254780724|r 312 ITMRDLVKNCLRMRPERIILGEVR---GPEVLD-L---LQAM-NTGHDGSMGTIH 358 (483)
Q Consensus 312 ~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea~~-~---l~A~-~TGH~G~ltTlH 358 (483)
--.+-++--+|-++|+.++..|-- |.++.. + ++.+ ..|.. ++...|
T Consensus 101 QkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~T-vi~vtH 154 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT-RIVIAH 154 (173)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEECC
T ss_conf 999999999982799999996876689989999999999978648989-999847
No 36
>PTZ00243 ABC transporter; Provisional
Probab=97.80 E-value=0.00031 Score=48.17 Aligned_cols=58 Identities=26% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE
Q ss_conf 89862258848998188888889999998303876767999642131256787567787
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET 301 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~ 301 (483)
+.+-+..+..++|+|++||||||||.+|++.++...--+.+....-|-. |.-|++..|
T Consensus 679 inl~v~~G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~-Q~pWi~n~T 736 (1560)
T PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVP-QQAWIMNAT 736 (1560)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEEC-CCCHHCCCC
T ss_conf 0588659978999899998799999999688843563899747089757-844405873
No 37
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.80 E-value=0.0012 Score=44.01 Aligned_cols=212 Identities=17% Similarity=0.266 Sum_probs=98.3
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHH-HHHHCCCCCCEE--EEECCHHHCCC-------------CCCEEEEEEECC
Q ss_conf 99898622588489981888888899999-983038767679--99642131256-------------787567787416
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNC-LTRYIDKDERIV--TCEDTAELQLQ-------------QPHVVRLETRPP 304 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~a-l~~~i~~~~riv--tIED~~El~l~-------------~~~~v~~~~~~~ 304 (483)
++|.--...+-+.||+||+|+||||+.-. +.......++.+ +.|++++--+. ....+.+....+
T Consensus 257 ~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G~l~i~~~~p 336 (501)
T PRK09302 257 EMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEEMERKGLLKIICARP 336 (501)
T ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEEEEECC
T ss_conf 87259975894699988999888999999999998659908999996799999999997399848887489479998370
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-------HHHHH---HHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHH
Q ss_conf 666530001899998752059988996575879-------99999---99987397010200047888889999997553
Q gi|254780724|r 305 NIEGEGEITMRDLVKNCLRMRPERIILGEVRGP-------EVLDL---LQAMNTGHDGSMGTIHANNARESFGRMEAMIA 374 (483)
Q Consensus 305 ~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~-------Ea~~~---l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~ 374 (483)
. +-..+--+..+.+..-..+|++++|.=+-+- |...+ +...... .| .||+=++-..+. .
T Consensus 337 ~-~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~~~~~~~r~~l~~L~~~Lk~-~g-vT~l~t~~~~~~-------~- 405 (501)
T PRK09302 337 E-STGLEDHLQIIKREIEEFKPSRVAVDPLSALARGGSLNEFRQFVIRLTDYLKQ-EE-ITGLFTNLTPDF-------M- 405 (501)
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH-CC-CEEEEEEECCCC-------C-
T ss_conf 0-05989999999999997299899995806876526859999999999999976-89-789997612355-------6-
Q ss_pred HCCCCCCHHHHHHHHHHHCCEEEEEEECC-CCC-EEEEEEEEEEEEECCEEEEEEEEEEEEE--CCCCCCEEEE-EEEEC
Q ss_conf 04679998999999974235889998769-998-7899999998414988998678987540--6688862879-99977
Q gi|254780724|r 375 MGGFTLPSQMVREIITSSLDVIVQTQRLR-DGS-RRITNICEIVGMEGNVIITQDLLKYEVM--GEDETGKLIG-QHIST 449 (483)
Q Consensus 375 ~~~~~~~~~~~~~~ia~avd~iV~~~r~~-dG~-Rrv~~I~Ev~g~e~~~~~~~~if~~~~~--~~~~~~~~~g-~~~~~ 449 (483)
++...++ ..+..-.|-||.+...+ +|. ||...|.---|...+ +.|-.|..+ |..=.....+ +=.-|
T Consensus 406 -g~~~~t~----~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R~s~h~----~~iRe~~It~~Gi~vg~p~~~~~Gilt 476 (501)
T PRK09302 406 -GSHSITE----SHISSLTDTWILLQYVEINGEMNRALNVLKMRGSWHS----KQIREFVITDKGIHIKDPFRGFEGILS 476 (501)
T ss_pred -CCCCCCC----CCHHHHCCEEEEEEEEEECCEEEEEEEEEEECCCCCC----CCEEEEEECCCCEEECCCCCCCCCEEE
T ss_conf -7664476----6600111247899987138999898999993689657----753789987996797431447763170
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99898899999986998369999999898
Q gi|254780724|r 450 GVSRPRFWNRAAQYGEEKNLAEVLQSLEK 478 (483)
Q Consensus 450 g~~~~~~~~~~~~~g~~~~~~~~~~~~e~ 478 (483)
|. |++...++. ..+...+.++|+
T Consensus 477 G~--p~~~~~~~~----~~~~~~~~~~~~ 499 (501)
T PRK09302 477 GS--PRRAQEAEE----SRLSRRFEEVER 499 (501)
T ss_pred CC--CCCCCCCHH----HHHHHHHHHHHH
T ss_conf 67--710442646----699998877761
No 38
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.79 E-value=0.00014 Score=50.64 Aligned_cols=165 Identities=20% Similarity=0.279 Sum_probs=81.5
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEE--EEECCHHHCCCC-------------CCEEEEEE-ECCCCCCC
Q ss_conf 2258848998188888889999998-3038767679--996421312567-------------87567787-41666653
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLT-RYIDKDERIV--TCEDTAELQLQQ-------------PHVVRLET-RPPNIEGE 309 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~-~~i~~~~riv--tIED~~El~l~~-------------~~~v~~~~-~~~~~e~~ 309 (483)
...+..+||+|++|||||||...++ ..+...++.+ +.|.+.+-.+.+ ........ .+...+..
T Consensus 29 ~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~~~G~L~i~~~~~~~~~~~ 108 (241)
T PRK06067 29 IPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDISDFFIWGYLRIFPLNTEGFEWN 108 (241)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 77990899980799887999999999998679829999942899999999998399859998669705783241113421
Q ss_pred ---CCCHHHHHHHHHHHCCCCEEEECCCCC-------HHHHHHH---HH-HHCCCCEEEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf ---000189999875205998899657587-------9999999---99-873970102000478888899999975530
Q gi|254780724|r 310 ---GEITMRDLVKNCLRMRPERIILGEVRG-------PEVLDLL---QA-MNTGHDGSMGTIHANNARESFGRMEAMIAM 375 (483)
Q Consensus 310 ---~~~t~~~ll~~aLR~~PD~IiVGEiRg-------~Ea~~~l---~A-~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~ 375 (483)
..--+..+++..-+.++++|++.=+-. .+...++ .. ...|-. ++.|+|....
T Consensus 109 ~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~~~~~~~~~~~l~~l~~l~~~g~t-vllt~~~~~~------------- 174 (241)
T PRK06067 109 SELAEKLLDLIIEFIKRRREEVIIIDSLTIFATYASEDDVLNFFTECKNLCDNGKT-ILITLHPYAF------------- 174 (241)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCC-------------
T ss_conf 55689999999999997199899992801754138889999999999999968988-9999056764-------------
Q ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEECCCCC--EEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 4679998999999974235889998769998--7899999998414988998678987540
Q gi|254780724|r 376 GGFTLPSQMVREIITSSLDVIVQTQRLRDGS--RRITNICEIVGMEGNVIITQDLLKYEVM 434 (483)
Q Consensus 376 ~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~--Rrv~~I~Ev~g~e~~~~~~~~if~~~~~ 434 (483)
... ....+....|.||.+....-|. ||..+|.-..|.. ....+.|.|+.+
T Consensus 175 -----~~~-~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K~RGs~---h~~g~~i~F~I~ 226 (241)
T PRK06067 175 -----SED-TLVRIRSICDVHLKLRKEQVGDRYVKVLEVVKLRGAR---KTTGNIISFDVD 226 (241)
T ss_pred -----CCC-CCCCEEEEEEEEEEEEEEEECCEEEEEEEEEEECCCC---CCCCCEEEEEEC
T ss_conf -----766-4312489989999958784399999999999915998---998888889983
No 39
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.79 E-value=0.0011 Score=44.41 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHCCCC---CCEEEEECCHHHCCCCCCEE
Q ss_conf 4667888650699889999989862258--848998188888889999998303876---76799964213125678756
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIR--CNVLISGGTGSGKTTLLNCLTRYIDKD---ERIVTCEDTAELQLQQPHVV 297 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~--~nilVsG~TGSGKTT~L~al~~~i~~~---~rivtIED~~El~l~~~~~v 297 (483)
+-++++++.. +.....|..+++.+ .++|++||.|+||||+..+++..+-.+ .....+.-. .+.-.+...+
T Consensus 11 P~~~~dvvGq----~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nas-d~~~~~~~~i 85 (337)
T PRK12402 11 PSLFEDILGQ----ESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVS-DFFDQGKKYL 85 (337)
T ss_pred CCCHHHHCCC----HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC-CCCCCCCCEE
T ss_conf 8979980397----9999999999977998769888929848999999999996799756783331165-3113564001
Q ss_pred -------EEEEECCCCCCCCCCHHHHHHHHHHHCCC-----CEEEECCCCC--HHHHHH-HHHHHC--CCC-EEEHH---
Q ss_conf -------77874166665300018999987520599-----8899657587--999999-999873--970-10200---
Q gi|254780724|r 298 -------RLETRPPNIEGEGEITMRDLVKNCLRMRP-----ERIILGEVRG--PEVLDL-LQAMNT--GHD-GSMGT--- 356 (483)
Q Consensus 298 -------~~~~~~~~~e~~~~~t~~~ll~~aLR~~P-----D~IiVGEiRg--~Ea~~~-l~A~~T--GH~-G~ltT--- 356 (483)
.....+...+......+.+.++......| ..||+-|+-. .+|..+ ++-|.. .|. -.++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~ 165 (337)
T PRK12402 86 VEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQP 165 (337)
T ss_pred ECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 01664234420153327737899999999986148877880499970713179999999998874088766998723864
Q ss_pred ---------------HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf ---------------0478888899999975530467999899999
Q gi|254780724|r 357 ---------------IHANNARESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 357 ---------------lHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
+...+..+...||..-|...+..++.+.+..
T Consensus 166 ~~ii~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ 211 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDL 211 (337)
T ss_pred CCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 4475247762445435898999999999999998499989999999
No 40
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.78 E-value=0.00015 Score=50.44 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=64.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHC---------CCCCCEEEEEEECCCCC--CCC
Q ss_conf 9862258848998188888889999998303876767999642--1312---------56787567787416666--530
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQ---------LQQPHVVRLETRPPNIE--GEG 310 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~---------l~~~~~v~~~~~~~~~e--~~~ 310 (483)
.+-++.+..+.|.|+.||||||+++.|+.++.|..--+++... .++. ++|..++...+-..+.. =++
T Consensus 22 ~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSg 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCH
T ss_conf 89986999999999998759999999986176678869999998899789999720898355636454199862888899
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCC---CHHHH----HHHHHHHCCCCEEEHHHC
Q ss_conf 0018999987520599889965758---79999----999998739701020004
Q gi|254780724|r 311 EITMRDLVKNCLRMRPERIILGEVR---GPEVL----DLLQAMNTGHDGSMGTIH 358 (483)
Q Consensus 311 ~~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea~----~~l~A~~TGH~G~ltTlH 358 (483)
+--.+=.+-.+|-++|+.++..|.- |+++. .++.....++. ++...|
T Consensus 102 GqkqRv~iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~T-vi~itH 155 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT-LIWITH 155 (178)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEEC
T ss_conf 999999999999649797672286556998999999999999839999-999805
No 41
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=0.00037 Score=47.70 Aligned_cols=82 Identities=27% Similarity=0.261 Sum_probs=44.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHH-HCC---------CCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 48998188888889999998303-876767999--64213-125---------678756778741666653000189999
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAE-LQL---------QQPHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~E-l~l---------~~~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
.++|.|++|+||||++..++... ..+.+++.+ |...+ ... ...|.... .....+.....-...+.
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIV--FATADDPAAARLLSKAE 78 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE--ECCCCCCHHHHHHHHHH
T ss_conf 9899989999899999999999876399799998666448999999986224671307999--35999769999999999
Q ss_pred HHHHHCCCCEEEECCCC
Q ss_conf 87520599889965758
Q gi|254780724|r 319 KNCLRMRPERIILGEVR 335 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEiR 335 (483)
+..-..+|+.+++..+.
T Consensus 79 ~~~~~~~~vliiiDSit 95 (165)
T cd01120 79 RLRERGGDDLIILDELT 95 (165)
T ss_pred HHHHCCCCEEEEEECHH
T ss_conf 99986997799992889
No 42
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=6.4e-05 Score=52.98 Aligned_cols=86 Identities=27% Similarity=0.375 Sum_probs=51.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEEECCH--HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 88489981888888899999983038767-679996421--312567875677874166665300018999987520599
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDE-RIVTCEDTA--ELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP 326 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~-rivtIED~~--El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P 326 (483)
+.++++.||+||||||++.+++..+.... .++.+.... +....... ............+...+..+...+-+..+
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9789999999702999999999872668996899875998988898765--30001122105199999999999984499
Q ss_pred CEEEECCCCCH
Q ss_conf 88996575879
Q gi|254780724|r 327 ERIILGEVRGP 337 (483)
Q Consensus 327 D~IiVGEiRg~ 337 (483)
+.|++.|+-..
T Consensus 80 ~viiiDei~~~ 90 (148)
T smart00382 80 DVLILDEITSL 90 (148)
T ss_pred CEEEEECCHHH
T ss_conf 89998275021
No 43
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.72 E-value=5.4e-05 Score=53.53 Aligned_cols=104 Identities=23% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHH-HCCCCCCEEEEEE------ECCCCCCCCCCHHHH
Q ss_conf 986225884899818888888999999830387676799964213-1256787567787------416666530001899
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAE-LQLQQPHVVRLET------RPPNIEGEGEITMRD 316 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~E-l~l~~~~~v~~~~------~~~~~e~~~~~t~~~ 316 (483)
..-++.+..+.|.|+.||||||+++.|+...++..--+.+-.... ..++|..+...-+ .+...+=+++--.+=
T Consensus 21 sl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSGGqkQRv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88988999999995899988999999869876998679976998799985646658875999963615467899999999
Q ss_pred HHHHHHHCCCCEEEECCCC---CHHHHH-HHHHHH
Q ss_conf 9987520599889965758---799999-999987
Q gi|254780724|r 317 LVKNCLRMRPERIILGEVR---GPEVLD-LLQAMN 347 (483)
Q Consensus 317 ll~~aLR~~PD~IiVGEiR---g~Ea~~-~l~A~~ 347 (483)
++--+|-++|+.++..|-- |.++.. +++...
T Consensus 101 alARal~~~p~iliLDEpTs~LD~~~~~~l~~~l~ 135 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999964999999758533289999999999999
No 44
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0021 Score=42.37 Aligned_cols=142 Identities=20% Similarity=0.320 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHH--------HCCCCCCEEEEEEECCCC
Q ss_conf 89999989862258848998188888889999998303876767999--64213--------125678756778741666
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAE--------LQLQQPHVVRLETRPPNI 306 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~E--------l~l~~~~~v~~~~~~~~~ 306 (483)
.+.-..|---+-++.-|||+|..|-||+|+|--++..+....+++.+ |++.. |.++..|.. +
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~-l------- 151 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLY-L------- 151 (456)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEE-E-------
T ss_conf 88876536772366179973689877989999999998705957999677678999999998289964557-7-------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCC----------HHHHHHHHHHHHHHC
Q ss_conf 6530001899998752059988996575879999999998739701020004788----------888999999755304
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANN----------ARESFGRMEAMIAMG 376 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s----------~~~ai~RL~~m~~~~ 376 (483)
-.+.++.+.+...=..+||.+||. |+-|+|++. .++.-..|..+++..
T Consensus 152 --~aEt~~e~I~~~l~~~~p~lvVID--------------------SIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~ 209 (456)
T COG1066 152 --LAETNLEDIIAELEQEKPDLVVID--------------------SIQTLYSEEITSAPGSVSQVREVAAELMRLAKTK 209 (456)
T ss_pred --EHHCCHHHHHHHHHHCCCCEEEEE--------------------CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf --411289999999985499789996--------------------5412302633579985899999999999999875
Q ss_pred CCCCCHHHHHHHHHHHCCEEEEEEECC--CCCEEEEEEEEEEE-EECC
Q ss_conf 679998999999974235889998769--99878999999984-1498
Q gi|254780724|r 377 GFTLPSQMVREIITSSLDVIVQTQRLR--DGSRRITNICEIVG-MEGN 421 (483)
Q Consensus 377 ~~~~~~~~~~~~ia~avd~iV~~~r~~--dG~Rrv~~I~Ev~g-~e~~ 421 (483)
+ -++=+|-|+.+.- -|-|-+.++...+- +||+
T Consensus 210 ~-------------i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyFEGd 244 (456)
T COG1066 210 N-------------IAIFIVGHVTKEGAIAGPRVLEHMVDTVLYFEGD 244 (456)
T ss_pred C-------------CEEEEEEEECCCCCCCCCHHEEEEEEEEEEEECC
T ss_conf 9-------------7399998882466326840043653689998305
No 45
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=6.4e-05 Score=52.99 Aligned_cols=99 Identities=27% Similarity=0.377 Sum_probs=70.3
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEE--EECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 225884899818888888999999830387676799964213125678756778--741666653000189999875205
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE--TRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~--~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
-+|-+++++.||||.|||.+..+|..++-.++.-++-=|..||+-.|- |+-. +-|..+ ++.-.-.|..+.|.
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs--VSrLIGaPPGYV----GyeeGG~LTEaVRr 591 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS--VSRLIGAPPGYV----GYEEGGQLTEAVRR 591 (786)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHH--HHHHHCCCCCCC----EECCCCCHHHHHHC
T ss_conf 987357886678865699999999999659974445545687777877--998727999872----00655400376606
Q ss_pred CCC-EEEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf 998-89965758--7999999-999873970
Q gi|254780724|r 325 RPE-RIILGEVR--GPEVLDL-LQAMNTGHD 351 (483)
Q Consensus 325 ~PD-~IiVGEiR--g~Ea~~~-l~A~~TGH~ 351 (483)
+|- +|+..||- .+..+.+ +|.+-.|..
T Consensus 592 ~PySViLlDEIEKAHpdV~nilLQVlDdGrL 622 (786)
T COG0542 592 KPYSVILLDEIEKAHPDVFNLLLQVLDDGRL 622 (786)
T ss_pred CCCEEEEECHHHHCCHHHHHHHHHHHCCCCE
T ss_conf 9986888412644088999999998467805
No 46
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.66 E-value=0.00026 Score=48.69 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=53.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 22588489981888888899999983038767679996421312567875677874166665300018999987520599
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP 326 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P 326 (483)
++.+-.+.+.||-|+||||+++.++....|+.--+.+.-... ...+...+=+++--.+-++-.+|=++|
T Consensus 22 v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~~~-----------~~~pq~~~LSGGqrQRv~iAral~~~p 90 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----------VYKPQYIDLSGGELQRVAIAAALLRNA 90 (177)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCE-----------ECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 589989999899999999999999688678899466668612-----------215551507989999999999982399
Q ss_pred CEEEECCC
Q ss_conf 88996575
Q gi|254780724|r 327 ERIILGEV 334 (483)
Q Consensus 327 D~IiVGEi 334 (483)
|.++..|=
T Consensus 91 ~lllLDEP 98 (177)
T cd03222 91 TFYLFDEP 98 (177)
T ss_pred CEEEECCC
T ss_conf 99997488
No 47
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00015 Score=50.36 Aligned_cols=113 Identities=27% Similarity=0.331 Sum_probs=63.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHC----------CCCCCEEEEEEECCCCCCCCC
Q ss_conf 9862258848998188888889999998303876767999642--1312----------567875677874166665300
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQ----------LQQPHVVRLETRPPNIEGEGE 311 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~----------l~~~~~v~~~~~~~~~e~~~~ 311 (483)
.+-++.+..+.|.|++||||||+++.++.+.+|..--|.+.+. .++. ++|..+....+-..|.- +++
T Consensus 22 sl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNiL-SgG 100 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL-SGG 100 (171)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCC-CHH
T ss_conf 8998599899999999983999999997677589748999999988599899863189996668437577999774-488
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCC---CHHHH----HHHHHHHCCCCEEEHHHC
Q ss_conf 018999987520599889965758---79999----999998739701020004
Q gi|254780724|r 312 ITMRDLVKNCLRMRPERIILGEVR---GPEVL----DLLQAMNTGHDGSMGTIH 358 (483)
Q Consensus 312 ~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea~----~~l~A~~TGH~G~ltTlH 358 (483)
--.+=++--+|-++|+.++..|.- |.++. .++.....|.. ++...|
T Consensus 101 q~Qri~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~T-vi~vtH 153 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKT-VIVIAH 153 (171)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEEC
T ss_conf 99999999999748998999577667998999999999999809998-999957
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.63 E-value=0.00011 Score=51.33 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=66.3
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE-E-CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2258848998188888889999998303876767999642131256787567787-4-1666653000189999875205
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET-R-PPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~-~-~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
-+|-+++|+.||||.|||.+.++|..++-.+++-++-=|..||+-.|. |.-.. . |..+ ++.-.-.|-.+.|.
T Consensus 593 ~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs--vsrLiGaPPGYV----Gy~eGG~LTe~Vrr 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT--VSRLKGSPPGYV----GYGEGGVLTEAVRR 666 (852)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHH--HHHHCCCCCCCC----CCCCCCHHHHHHHH
T ss_conf 998568998789987789999999999719861147842243210436--878638999766----74877721098880
Q ss_pred CC-CEEEECCCC--CHHHHH-HHHHHHCCC
Q ss_conf 99-889965758--799999-999987397
Q gi|254780724|r 325 RP-ERIILGEVR--GPEVLD-LLQAMNTGH 350 (483)
Q Consensus 325 ~P-D~IiVGEiR--g~Ea~~-~l~A~~TGH 350 (483)
+| .+|+..||- .++.+. ++|.+--|+
T Consensus 667 ~PysVvLfDEIEKAHpdV~nilLQvlD~G~ 696 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred CCCEEEEECHHHHCCHHHHHHHHHHHCCCE
T ss_conf 998688861130028899999998724677
No 49
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=7.2e-05 Score=52.64 Aligned_cols=99 Identities=27% Similarity=0.405 Sum_probs=66.9
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE--ECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2258848998188888889999998303876767999642131256787567787--41666653000189999875205
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET--RPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~--~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
-+|-+++|++||||.|||.+.++|..++-.++.-++-=|..||+-.| .|.... -|..+ ++.-.-.|-.++|.
T Consensus 595 ~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~h--sVSrLiGaPPGYV----Gy~eGG~LTeaVRr 668 (857)
T PRK10865 595 NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH--SVSRLVGAPPGYV----GYEEGGYLTEAVRR 668 (857)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCH--HHHHHCCCCCCCC----CCCCCCCHHHHHHH
T ss_conf 99738999868987888999999999983893342562533211301--2767558998766----75778811099981
Q ss_pred CC-CEEEECCCC--CHHHHH-HHHHHHCCCC
Q ss_conf 99-889965758--799999-9999873970
Q gi|254780724|r 325 RP-ERIILGEVR--GPEVLD-LLQAMNTGHD 351 (483)
Q Consensus 325 ~P-D~IiVGEiR--g~Ea~~-~l~A~~TGH~ 351 (483)
+| .+|+..||- .++.+. ++|.+--|+.
T Consensus 669 ~PySVvLfDEIEKAHpdV~nilLQvlD~G~L 699 (857)
T PRK10865 669 RPYSVILLDEVEKAHPDVFNILLQVLDDGRL 699 (857)
T ss_pred CCCEEEEEHHHHHHCHHHHHHHHHHHCCCEE
T ss_conf 9877886325766385899999987036832
No 50
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00013 Score=50.94 Aligned_cols=110 Identities=21% Similarity=0.338 Sum_probs=67.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 98622588489981888888899999983038767679996421--31256-7875677874166665300018999987
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
..-+..+..+.|.|+.||||||+++.|+..+++..--+++.... +.... ..+.+.....- +++--.+-.+-.
T Consensus 19 ~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~QL-----SgGqkqrv~iA~ 93 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQL-----SGGQRQRVALAR 93 (157)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCCCCC-----CHHHHHHHHHHH
T ss_conf 789879979999878899989999999588479962899999999979999999406087668-----869999999999
Q ss_pred HHHCCCCEEEECCCC---CHHH----HHHHHHH-HCCCCEEEHHHCC
Q ss_conf 520599889965758---7999----9999998-7397010200047
Q gi|254780724|r 321 CLRMRPERIILGEVR---GPEV----LDLLQAM-NTGHDGSMGTIHA 359 (483)
Q Consensus 321 aLR~~PD~IiVGEiR---g~Ea----~~~l~A~-~TGH~G~ltTlHa 359 (483)
+|-++|+.++..|-- |+.+ +.++..+ ..|.. ++.+.|-
T Consensus 94 al~~~p~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~t-ii~vtH~ 139 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRT-VIIVTHD 139 (157)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 997099999996987668999999999999999968999-9999089
No 51
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.61 E-value=0.00018 Score=49.84 Aligned_cols=96 Identities=28% Similarity=0.383 Sum_probs=59.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE--ECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 258848998188888889999998303876767999642131256787567787--416666530001899998752059
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET--RPPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~--~~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
++-+|++++||||+|||.+..+|..++...++-++.-|..|+.-++ .+.... .+..+ +. .-.-.+-.++|.+
T Consensus 1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~--~v~~l~g~~~gyv-g~---~~~G~l~~~v~~~ 74 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEH--SVSRLIGAPPGYV-GY---EEGGQLTEAVRRK 74 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH--HHHHHCCCCCCCC-CC---CCCCCHHHHHHHC
T ss_conf 9837999889899899999999999967985344885575654256--9998705899872-62---4265078999838
Q ss_pred CC-EEEECCCC--CHHHHH-HHHHHHCC
Q ss_conf 98-89965758--799999-99998739
Q gi|254780724|r 326 PE-RIILGEVR--GPEVLD-LLQAMNTG 349 (483)
Q Consensus 326 PD-~IiVGEiR--g~Ea~~-~l~A~~TG 349 (483)
|. +|++-|+- .++++. ++|.+..|
T Consensus 75 p~~VillDEIeKa~~~V~~~LL~ild~g 102 (168)
T pfam07724 75 PYSIVLIDEIEKAHPGVQNDLLQILEGG 102 (168)
T ss_pred CCCEEEEHHHHHHCHHHHHHHHHHCCCC
T ss_conf 9848986577665899999999870587
No 52
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.60 E-value=0.00023 Score=49.06 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=65.4
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 86225884899818888888999999830387676799964213125678756778741666653000189999875205
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
+-++.+..+.+.||-||||||+++.|+..+++..--+++.+... +....+- +++--.+-++-.+|=+
T Consensus 21 ~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~--------i~y~~QL-----SgGqkqr~~la~al~~ 87 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVK--------IGYFEQL-----SGGEKMRLALAKLLLE 87 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCE--------EEEEHHC-----CHHHHHHHHHHHHHCC
T ss_conf 99879999999989998499999998489889850999999608--------9987007-----9999999999999725
Q ss_pred CCCEEEECCCC---CHHHHHH-HHHHHCCCCEEEHHHC
Q ss_conf 99889965758---7999999-9998739701020004
Q gi|254780724|r 325 RPERIILGEVR---GPEVLDL-LQAMNTGHDGSMGTIH 358 (483)
Q Consensus 325 ~PD~IiVGEiR---g~Ea~~~-l~A~~TGH~G~ltTlH 358 (483)
+|+.++..|-- |.++... .+....=+...+.+-|
T Consensus 88 ~p~iliLDEPt~~LD~~~~~~i~~~l~~~~~tii~vsH 125 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSH 125 (144)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99899995775558999999999999970999999967
No 53
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00017 Score=50.02 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=50.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEEE--CCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 98622588489981888888899999983038767---679996--4213125678756778741666653000189999
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE---RIVTCE--DTAELQLQQPHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~---rivtIE--D~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
..-++++..+.+.||.||||||+|+.|+..++++. --+.+. +..+........+.... ....--...|..+.+
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~--q~~~~~~~ltv~e~l 104 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVS--EEDVHFPTLTVRETL 104 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEEC--CCCCCCCCCCHHHHH
T ss_conf 889809849999989999889999998378789875137999999994051486420199986--732237688099999
Q ss_pred HHHHHCCCCEEEECCCCCHHH
Q ss_conf 875205998899657587999
Q gi|254780724|r 319 KNCLRMRPERIILGEVRGPEV 339 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEiRg~Ea 339 (483)
+.+++.+.|..+ .++-|+|-
T Consensus 105 ~~~~~~~~~~~~-~~LSgGqk 124 (202)
T cd03233 105 DFALRCKGNEFV-RGISGGER 124 (202)
T ss_pred HHHHHHCCCCCC-CCCCHHHH
T ss_conf 999984658744-45899999
No 54
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.0002 Score=49.59 Aligned_cols=114 Identities=23% Similarity=0.303 Sum_probs=67.2
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HH----HC------CCCCCEEEEEEECCCCCCCCCC
Q ss_conf 862258848998188888889999998303876767999642--13----12------5678756778741666653000
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AE----LQ------LQQPHVVRLETRPPNIEGEGEI 312 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~E----l~------l~~~~~v~~~~~~~~~e~~~~~ 312 (483)
+-++.+..+.+.|+-||||||+|+.++..++|+.--+++... .. .. .+.+......+-..+.+=+++.
T Consensus 21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~ 100 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHH
T ss_conf 78879939999878997999999999768577878899999998868488865789995687667126778986339899
Q ss_pred HHHHHHHHHHHCCCCEEEECCC-CC--HHH----HHHHHH-HHCCCCEEEHHHCC
Q ss_conf 1899998752059988996575-87--999----999999-87397010200047
Q gi|254780724|r 313 TMRDLVKNCLRMRPERIILGEV-RG--PEV----LDLLQA-MNTGHDGSMGTIHA 359 (483)
Q Consensus 313 t~~~ll~~aLR~~PD~IiVGEi-Rg--~Ea----~~~l~A-~~TGH~G~ltTlHa 359 (483)
-..-.+-.+|-.+|+.++..|- .| +.+ +.+++. ...|.. ++-+.|-
T Consensus 101 kqrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~t-vi~~tH~ 154 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT-ILLSSHI 154 (173)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEECCC
T ss_conf 99999999996499999990886579999999999999999968999-9999283
No 55
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.54 E-value=0.00032 Score=48.07 Aligned_cols=94 Identities=26% Similarity=0.355 Sum_probs=56.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCHHHCCCC-CCEEEEEEECC-CCCC-------CCCCHHHHHHHHH
Q ss_conf 48998188888889999998303876767999-6421312567-87567787416-6665-------3000189999875
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTAELQLQQ-PHVVRLETRPP-NIEG-------EGEITMRDLVKNC 321 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~El~l~~-~~~v~~~~~~~-~~e~-------~~~~t~~~ll~~a 321 (483)
-.+|+|==||||||+||.++...+ .+|+.+| -+-.|..+++ ........... -.+| ...+.+-.-|..
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHH-
T ss_conf 799811677998999999985458-980799985574022167764134897579836970787034215899999985-
Q ss_pred HHCCCCEEEECCCCCH-HHHHHHHHHHC
Q ss_conf 2059988996575879-99999999873
Q gi|254780724|r 322 LRMRPERIILGEVRGP-EVLDLLQAMNT 348 (483)
Q Consensus 322 LR~~PD~IiVGEiRg~-Ea~~~l~A~~T 348 (483)
+|.+||+|+| |.-|- +-...+++...
T Consensus 81 ~~~~~D~ivI-EtTGlA~P~pv~~t~~~ 107 (323)
T COG0523 81 RRDRPDRLVI-ETTGLADPAPVIQTFLT 107 (323)
T ss_pred CCCCCCEEEE-ECCCCCCCHHHHHHHHC
T ss_conf 2568998999-68877786999998606
No 56
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.53 E-value=0.00023 Score=49.12 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=64.3
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEEECCH----HHCCCCCCEEEEEEEC
Q ss_conf 86506998899999898622588489981888888899999983038767-679996421----3125678756778741
Q gi|254780724|r 229 LVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE-RIVTCEDTA----ELQLQQPHVVRLETRP 303 (483)
Q Consensus 229 l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~-rivtIED~~----El~l~~~~~v~~~~~~ 303 (483)
+-.+....+.+..+...+...++.++|+|+.||||||+++.++..++++. ..+.|-++. |+- ... .-.+-...
T Consensus 22 ~y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll-~~i-~~~lg~~~ 99 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLL-RMV-AADFGLET 99 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHH-HHHCCCCC
T ss_conf 1478669999999999996489659997299898899999999845934548999769999999999-999-99859898
Q ss_pred CCCCCCCC--CHHHHH-HHHHHHCCCCEEEECCCC--CHHHHHHH---HHHHCCCCEEEHHHCCCCHH
Q ss_conf 66665300--018999-987520599889965758--79999999---99873970102000478888
Q gi|254780724|r 304 PNIEGEGE--ITMRDL-VKNCLRMRPERIILGEVR--GPEVLDLL---QAMNTGHDGSMGTIHANNAR 363 (483)
Q Consensus 304 ~~~e~~~~--~t~~~l-l~~aLR~~PD~IiVGEiR--g~Ea~~~l---~A~~TGH~G~ltTlHa~s~~ 363 (483)
. ...+.. -.+.+. ......-+.-++||.|.- +.|+.+.+ ....++....+..+=...+.
T Consensus 100 ~-~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~Gqpe 166 (269)
T TIGR03015 100 E-GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE 166 (269)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
T ss_conf 8-989999999999999999966994699972422199999999999970135888704899957867
No 57
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.51 E-value=0.00014 Score=50.61 Aligned_cols=50 Identities=30% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--CCHHHCC
Q ss_conf 9898622588489981888888899999983038767679996--4213125
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE--DTAELQL 291 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE--D~~El~l 291 (483)
=+..-++++..+.|.||+||||||+++.|+.+.+|+.--|+|- |-.++.+
T Consensus 359 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp~~G~I~idG~di~~~~~ 410 (575)
T PRK11160 359 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIASYSE 410 (575)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
T ss_conf 7158976998899988999759999999862367899889999897563888
No 58
>PRK08903 hypothetical protein; Validated
Probab=97.51 E-value=0.0068 Score=38.83 Aligned_cols=160 Identities=15% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHH-HHCCC--CCEEEECCCCCCHHHHHHHHHHHCCC-CCCE--EEEECCHHHCCC--
Q ss_conf 6546678886506998899999898-62258--84899818888888999999830387-6767--999642131256--
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQI-IGRIR--CNVLISGGTGSGKTTLLNCLTRYIDK-DERI--VTCEDTAELQLQ-- 292 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~~-~v~~~--~nilVsG~TGSGKTT~L~al~~~i~~-~~ri--vtIED~~El~l~-- 292 (483)
....++++++.. . +...+..+.. +.... ..+.|.|++|||||-+|.|+++.... ..+. ++.+...+....
T Consensus 12 ~~~~tfdnFv~g-~-n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 89 (227)
T PRK08903 12 PPPPTFDNFIAG-E-NAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLLAFDFDP 89 (227)
T ss_pred CCCCCHHCCCCC-C-HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 998764315577-7-59999999988743887866999899999888999999999980699749965110457774200
Q ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCCHHHHHH---HHHHHCCCCEEEHHHCCCCHHHHHHH
Q ss_conf 7875677874166665300018999987520599-8899657587999999---99987397010200047888889999
Q gi|254780724|r 293 QPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP-ERIILGEVRGPEVLDL---LQAMNTGHDGSMGTIHANNARESFGR 368 (483)
Q Consensus 293 ~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P-D~IiVGEiRg~Ea~~~---l~A~~TGH~G~ltTlHa~s~~~ai~R 368 (483)
+...+-..-- ....+.....+.+++..+ +.+- -.+++.--+-+....+ +..=..+ |....++..+-..-..=
T Consensus 90 ~~d~l~iDDi-~~i~~~~q~~lF~l~N~~-~~~~~~~ll~s~~~~p~~l~~~~DL~SRl~~--gl~~~i~~pdde~~~~i 165 (227)
T PRK08903 90 RAELYAVDDV-ERLDDAQQIALFNLFNRV-RAHGKTALLVAGPAAPLALDVREDLRTRLGW--GLVYEVKPLSDEDKIAA 165 (227)
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHHH-HHCCCCEEEECCCCCHHHCCCCHHHHHHHHC--CCEEEEECCCHHHHHHH
T ss_conf 1898999641-148956999999999999-9729948997189971201200899999938--97389979799999999
Q ss_pred HHHHHHHCCCCCCHHHHH
Q ss_conf 997553046799989999
Q gi|254780724|r 369 MEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 369 L~~m~~~~~~~~~~~~~~ 386 (483)
|...+..-|..++.+++.
T Consensus 166 L~~~a~~rgl~l~~~v~~ 183 (227)
T PRK08903 166 LKAAAAERGLQLADEVPD 183 (227)
T ss_pred HHHHHHHCCCCCCHHHHH
T ss_conf 999999629999889999
No 59
>PTZ00243 ABC transporter; Provisional
Probab=97.50 E-value=0.00014 Score=50.66 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=57.4
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--CCHHHCCCC-CCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 9898622588489981888888899999983038767679996--421312567-8756778741666653000189999
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE--DTAELQLQQ-PHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE--D~~El~l~~-~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
=+..-++++-.|-|+|.|||||||++.+|..++++..--|+|- |...+.+.. ...+....+. .+ |+
T Consensus 1328 ~Isf~I~pGEKVGIVGRTGSGKSSLi~aLfRl~e~~~G~I~IDGvDIs~i~L~~LRs~isIIPQd-------Pv----LF 1396 (1560)
T PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD-------PV----LF 1396 (1560)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHCEEECCC-------CC----EE
T ss_conf 74699889999999879874399999999703277889899979982028989998508488978-------82----07
Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 87520599889965758799999999987
Q gi|254780724|r 319 KNCLRMRPERIILGEVRGPEVLDLLQAMN 347 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~ 347 (483)
.-.+|.|-|- .+|.-|.|.+.+++.++
T Consensus 1397 sGTIR~NLDP--~~e~sD~eIw~ALe~v~ 1423 (1560)
T PTZ00243 1397 DGTVRQNVDP--FLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCHHHHCCC--CCCCCHHHHHHHHHHCC
T ss_conf 8668987299--88999999999999858
No 60
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00088 Score=45.04 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=67.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHC---CCCCCEEEEEEECCCCCC----------
Q ss_conf 98622588489981888888899999983038767679996421--312---567875677874166665----------
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQ---LQQPHVVRLETRPPNIEG---------- 308 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~---l~~~~~v~~~~~~~~~e~---------- 308 (483)
.+-++.+..+.|.||.||||||+|+.+....+|+.--+.+.... ... .+....+.+..+..+.-.
T Consensus 20 s~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~tv~eNv~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHCE
T ss_conf 76988998999999999839999999985999996399999999988861024541775999269988998928996008
Q ss_pred --CCCCHHHHHHHHHHHCCCCEEEECCC---CCHHH----HHHHHHHH--CCCCEEEHHHC
Q ss_conf --30001899998752059988996575---87999----99999987--39701020004
Q gi|254780724|r 309 --EGEITMRDLVKNCLRMRPERIILGEV---RGPEV----LDLLQAMN--TGHDGSMGTIH 358 (483)
Q Consensus 309 --~~~~t~~~ll~~aLR~~PD~IiVGEi---Rg~Ea----~~~l~A~~--TGH~G~ltTlH 358 (483)
+|+--.+-++--||=.+|+.++..|= -|+.. .+.++..+ .|-. ++-..|
T Consensus 100 ~LSGGq~QRvaIARAL~~~P~ill~DEPts~LD~~~~~~i~~~l~~l~~~~~~t-~i~vTH 159 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT-VVLVTH 159 (178)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCE-EEEECC
T ss_conf 177268899999999852999999708976479999999999999999964999-999989
No 61
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00025 Score=48.85 Aligned_cols=99 Identities=23% Similarity=0.392 Sum_probs=66.0
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEE--EECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 225884899818888888999999830387676799964213125678756778--741666653000189999875205
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE--TRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~--~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
-+|-+++|++||||.|||.+.++|..++-.++.-++-=|..||+-.| .|.-. +-|..+ ++.-.-.|-.++|.
T Consensus 536 ~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~h--svsrLIGaPPGYV----Gy~eGG~LTeaVrr 609 (823)
T CHL00095 536 NRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKH--TVSKLIGSPPGYV----GYNEGGQLTEAVRK 609 (823)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--CHHHHCCCCCCCC----CCCCCCCHHHHHHC
T ss_conf 99746899878998877999999999974782025885351015542--0767458998766----77878820198871
Q ss_pred CCCE-EEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf 9988-9965758--7999999-999873970
Q gi|254780724|r 325 RPER-IILGEVR--GPEVLDL-LQAMNTGHD 351 (483)
Q Consensus 325 ~PD~-IiVGEiR--g~Ea~~~-l~A~~TGH~ 351 (483)
+|-- |+..||- .++.+.+ +|-+--|+.
T Consensus 610 ~PysVvLfDEIEKAHpdV~nilLQvlDdG~L 640 (823)
T CHL00095 610 KPYTVVLFDEIEKAHPDIFNLLLQILDDGRL 640 (823)
T ss_pred CCCEEEEECHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 9986998621311388999988765168843
No 62
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=0.001 Score=44.58 Aligned_cols=114 Identities=25% Similarity=0.306 Sum_probs=67.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH--------------CCCCCCEEEEEEECCCC---
Q ss_conf 9862258848998188888889999998303876767999642131--------------25678756778741666---
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL--------------QLQQPHVVRLETRPPNI--- 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El--------------~l~~~~~v~~~~~~~~~--- 306 (483)
.+-+..+--+.|+||.||||||+|+.+-..-+++.--++|+..... -.++-|-.+-.|--.|.
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH~TvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred CEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHH
T ss_conf 11673897899989999988899999977868878649999872254546999998557662466546553298887775
Q ss_pred ----------------------------------CCCCCCHHHHHHHHHHHCCCCEEEECCCC---CHHH-HH----HHH
Q ss_conf ----------------------------------65300018999987520599889965758---7999-99----999
Q gi|254780724|r 307 ----------------------------------EGEGEITMRDLVKNCLRMRPERIILGEVR---GPEV-LD----LLQ 344 (483)
Q Consensus 307 ----------------------------------e~~~~~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea-~~----~l~ 344 (483)
.=+|+=-.+-++--||=|+|+.++..|.- |+|. .+ |.+
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~dka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 39972989999999999999986955666539510480788999999987179988863697543798899999999999
Q ss_pred HHHCCCCEEEHHHC
Q ss_conf 98739701020004
Q gi|254780724|r 345 AMNTGHDGSMGTIH 358 (483)
Q Consensus 345 A~~TGH~G~ltTlH 358 (483)
.+..|.. .+...|
T Consensus 182 LA~eGmT-MivVTH 194 (240)
T COG1126 182 LAEEGMT-MIIVTH 194 (240)
T ss_pred HHHCCCE-EEEEEC
T ss_conf 9976986-999950
No 63
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.46 E-value=0.00017 Score=50.05 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=36.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++++..+.|+|++||||||+++.|+.+.+|..--|.|.+
T Consensus 23 sl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg 64 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG 64 (238)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 899769999999999999899999998238618851899999
No 64
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.45 E-value=0.0049 Score=39.82 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHH-HHHCCCC-CEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEE--ECCHHHC-----
Q ss_conf 654667888650699889999989-8622588-4899818888888999999830387-6767999--6421312-----
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQ-IIGRIRC-NVLISGGTGSGKTTLLNCLTRYIDK-DERIVTC--EDTAELQ----- 290 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~-~~v~~~~-nilVsG~TGSGKTT~L~al~~~i~~-~~rivtI--ED~~El~----- 290 (483)
....++++++.. . +...+..+. .+-.+.. .+.|.||+|||||.+|++++..... ..+++.+ ++-....
T Consensus 9 ~~~~tfdnFi~~-~-N~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~~~l~ 86 (226)
T TIGR03420 9 PDDPTFDNFYAG-G-NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLE 86 (226)
T ss_pred CCCCCHHCCCCC-C-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 998763123658-6-79999999987646688869998999998899999999998626995799529998775399997
Q ss_pred -CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-----HHHHHHHCCCCEEEHHHCCCCH
Q ss_conf -5678756778741666653--0001899998752059988996575879999-----9999987397010200047888
Q gi|254780724|r 291 -LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVL-----DLLQAMNTGHDGSMGTIHANNA 362 (483)
Q Consensus 291 -l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-----~~l~A~~TGH~G~ltTlHa~s~ 362 (483)
+.+...+-.. ......++ .+..+..++.. +..+...|++.=-+-+.-+ ++..=.++| ...+++..+-
T Consensus 87 ~l~~~d~l~iD-Di~~i~~~~~~e~~lF~l~N~-~~~~~~~ilits~~~p~~l~~~l~dL~SRl~~~---~~~~I~~pdd 161 (226)
T TIGR03420 87 GLEQADLVCLD-DVEAIAGQPEWQEALFHLYNR-VREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG---LVFQLPPLSD 161 (226)
T ss_pred HCCCCCEEEEE-CHHHHCCCHHHHHHHHHHHHH-HHHHCCEEEEECCCCHHHCCCCHHHHHHHHHCC---CEEECCCCCH
T ss_conf 27448999996-633343783789999999999-986528289867888232032017799999688---5685279999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8899999975530467999899999
Q gi|254780724|r 363 RESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 363 ~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
..-..=|...+..-+..++.+.+..
T Consensus 162 ~~~~~iL~k~~~~r~i~i~~~vi~y 186 (226)
T TIGR03420 162 EEKIAALQSRAARRGLQLPDEVADY 186 (226)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999999998599889999999
No 65
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=97.45 E-value=0.0061 Score=39.16 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=59.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH---CCCCCCEEEEEEEC--------------CCCCCCCCC
Q ss_conf 8848998188888889999998303876767999642131---25678756778741--------------666653000
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL---QLQQPHVVRLETRP--------------PNIEGEGEI 312 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El---~l~~~~~v~~~~~~--------------~~~e~~~~~ 312 (483)
++.|+++||.||||||+++.|+...|..-..+.-=.|+.- ...+.+.... ++. ....|..-=
T Consensus 1 ~klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fv-s~~~F~~~i~~~~FlE~~~~~g~~YG 79 (182)
T pfam00625 1 RRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFV-SKEEMENDISANEFLEHAEFNGNYYG 79 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEE-CHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 98699989899999999999998486673445765547999878789657996-58999998754377762640797256
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 189999875205998899657587999999999873970102000478888899999975
Q gi|254780724|r 313 TMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 313 t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m 372 (483)
+..+.++..+...-+.|+..+..|... ++... ... ..--+-+.|....-.||...
T Consensus 80 t~~~~I~~~~~~g~~vvl~id~~g~~~---lk~~~-~~~-~~IfI~pps~~~L~~RL~~R 134 (182)
T pfam00625 80 TSKEAIEQIAESGKICILDVDIQGVKQ---LRKAE-LSP-ISVFIKPPSLKVLQRRLKGR 134 (182)
T ss_pred ECHHHHHHHHHCCCEEEEEECHHHHHH---HHHHC-CCC-EEEEEECCCHHHHHHHHHHC
T ss_conf 402777999867996999972899999---98749-574-89999387999999999814
No 66
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.43 E-value=0.00018 Score=49.79 Aligned_cols=43 Identities=30% Similarity=0.435 Sum_probs=37.6
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8986225884899818888888999999830387676799964
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+..-++++..+-|.|++||||||+++.|+.+.+|+.--+.|-+
T Consensus 354 isl~i~~Ge~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg 396 (585)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLHRVFDPQSGRIRIDG 396 (585)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECC
T ss_conf 0389759988999889898699999998601578879675898
No 67
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00018 Score=49.80 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=37.4
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 89862258848998188888889999998303876767999642
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
+.+-++++..+.|+|++||||||+++.|+.+.+|..--|.|.+.
T Consensus 20 isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 63 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ 63 (236)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCE
T ss_conf 68998699999999999998999999974385488748999999
No 68
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.42 E-value=0.0013 Score=43.77 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEEECCH--HHCCCCCCEEEEEEECCCCCC-----------
Q ss_conf 986225884899818888888999999830387--67679996421--312567875677874166665-----------
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK--DERIVTCEDTA--ELQLQQPHVVRLETRPPNIEG----------- 308 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~--~~rivtIED~~--El~l~~~~~v~~~~~~~~~e~----------- 308 (483)
..-++++..+.|.||.||||||+|+.|+....+ ..--|++.... ...+. ..+.+..+....-+
T Consensus 29 s~~v~~Gei~~ilGpnGaGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~--~~ig~v~Q~~~l~~~ltv~e~l~~~ 106 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR--KIIGYVPQDDILHPTLTVRETLMFA 106 (194)
T ss_pred EEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCEECCHHHHH--HEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 88990881999998999519999999857777899628999999999757843--1289984665237768499999999
Q ss_pred ------CCCCHHHHHHHHHHHCCCCEEEECCC-C--CHHH----HHHHHH-HHCCCCEEEHHHCC
Q ss_conf ------30001899998752059988996575-8--7999----999999-87397010200047
Q gi|254780724|r 309 ------EGEITMRDLVKNCLRMRPERIILGEV-R--GPEV----LDLLQA-MNTGHDGSMGTIHA 359 (483)
Q Consensus 309 ------~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~Ea----~~~l~A-~~TGH~G~ltTlHa 359 (483)
+++--.+-.+-.+|=++|+.+++.|- . |+.+ +.+++. ...|.. ++-+.|-
T Consensus 107 a~l~~LSgGqrqRv~iA~aL~~~P~illlDEPTsgLD~~~~~~i~~~l~~l~~~g~t-vi~~tH~ 170 (194)
T cd03213 107 AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRT-IICSIHQ 170 (194)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 872698889999999999996399889994898788989999999999999968989-9999588
No 69
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=97.42 E-value=0.00012 Score=51.15 Aligned_cols=40 Identities=43% Similarity=0.529 Sum_probs=31.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCC-C----CCEEEEECCH
Q ss_conf 25884899818888888999999830387-6----7679996421
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDK-D----ERIVTCEDTA 287 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~-~----~rivtIED~~ 287 (483)
+.-||-+|.|+|||||||||+-|+..... . .+|+.+-.-.
T Consensus 514 r~~GhT~IfG~~G~GKTtLl~fL~a~~~ky~~~~a~~~~~fDkd~ 558 (931)
T TIGR00929 514 RVLGHTLIFGPTGSGKTTLLNFLLAQLQKYKPNFALTIFAFDKDR 558 (931)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 103877788888984699999999997424889870699988789
No 70
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.42 E-value=0.00017 Score=49.95 Aligned_cols=47 Identities=30% Similarity=0.309 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 99989862258848998188888889999998303876767999642
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
..=+..-++++..+.|.|++||||||+++.|+.+.+|+.--+.|-+.
T Consensus 331 L~~isl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~idg~ 377 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI 377 (569)
T ss_pred HCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECE
T ss_conf 30765688899789987999998799999999776426787465010
No 71
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00021 Score=49.37 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=36.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.|+|++||||||+++.|+.+.+|.+--+.|.+
T Consensus 22 nl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 63 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG 63 (234)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 899879999999989998299999999667667886899999
No 72
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.40 E-value=0.00021 Score=49.36 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8986225884899818888888999999830387676799964
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+..-++++..+.|.|++||||||+++.|+.+.+|..--|.+-.
T Consensus 56 Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g 98 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 (282)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 4899849999999999998199999999578727865899999
No 73
>PRK13695 putative NTPase; Provisional
Probab=97.40 E-value=0.002 Score=42.61 Aligned_cols=103 Identities=21% Similarity=0.372 Sum_probs=57.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC-CCE--EEEECCHHH-----------------CCCCCCEEEEEEECCCCCCC
Q ss_conf 8848998188888889999998303876-767--999642131-----------------25678756778741666653
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKD-ERI--VTCEDTAEL-----------------QLQQPHVVRLETRPPNIEGE 309 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~-~ri--vtIED~~El-----------------~l~~~~~v~~~~~~~~~e~~ 309 (483)
...|+|||+.|+||||++.-++..+..+ .++ ...++..|- .+.+.+.. .++. + |+
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~---~~~~-V-gk 77 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAV---SRPR-V-GK 77 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCC---CCCC-C-CC
T ss_conf 42999878999889999999999986369617469952560388285059999058856876753788---9855-4-56
Q ss_pred CCCHHH---H----HHHHHHHCCCCEEEECCCCCHHH-----HHH-HHHHHCCCCEEEHHHCC
Q ss_conf 000189---9----99875205998899657587999-----999-99987397010200047
Q gi|254780724|r 310 GEITMR---D----LVKNCLRMRPERIILGEVRGPEV-----LDL-LQAMNTGHDGSMGTIHA 359 (483)
Q Consensus 310 ~~~t~~---~----ll~~aLR~~PD~IiVGEiRg~Ea-----~~~-l~A~~TGH~G~ltTlHa 359 (483)
-.++.. + +++.++ ..+|.|++.||---|. ..+ .++++++-+ ++.|+|-
T Consensus 78 Y~V~~~~~e~~~~~~l~~a~-~~~dlivIDEIG~MEl~s~~F~~~V~~~L~s~kp-vl~tih~ 138 (174)
T PRK13695 78 YVVNLEDLERIAIPAISRAL-READLIIIDEIGPMELKSKKFVSAVEEVLKSEKP-VIATVHR 138 (174)
T ss_pred EEEEHHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECH
T ss_conf 68716897899899998353-5787999963103311049999999999738998-9999775
No 74
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.40 E-value=0.00013 Score=50.81 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=4.1
Q ss_pred HHHHHHHCCC
Q ss_conf 9975530467
Q gi|254780724|r 369 MEAMIAMGGF 378 (483)
Q Consensus 369 L~~m~~~~~~ 378 (483)
|.+|+.-.|.
T Consensus 976 ldtlFIDEGF 985 (1047)
T PRK10246 976 IDSLFLDEGF 985 (1047)
T ss_pred CCCEEECCCC
T ss_conf 8846567997
No 75
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.40 E-value=0.00023 Score=49.12 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=38.3
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 89862258848998188888889999998303876767999642
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
+..-++++..+.|.|++||||||+++-|+.+.+|..--++|-+.
T Consensus 342 isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~ 385 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 04798599889998999997799999982896699986989999
No 76
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.40 E-value=0.00021 Score=49.35 Aligned_cols=42 Identities=31% Similarity=0.336 Sum_probs=36.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.|++||||||+++.++.+.+|..--|.|.+
T Consensus 24 sl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 65 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDG 65 (220)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 999879999999999998599999999672547865899999
No 77
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.39 E-value=0.0055 Score=39.46 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEE--ECCHHH--------CCCCCCEEEEEEE
Q ss_conf 9988999998986225884899818888888999999830387-6767999--642131--------2567875677874
Q gi|254780724|r 234 AVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTC--EDTAEL--------QLQQPHVVRLETR 302 (483)
Q Consensus 234 ~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtI--ED~~El--------~l~~~~~v~~~~~ 302 (483)
+--.|.-..|---+-++..+|++|.+|-||+|||--++..+.. ..+++.+ |++.+= .+...|..
T Consensus 66 Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~----- 140 (372)
T cd01121 66 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLY----- 140 (372)
T ss_pred CCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCE-----
T ss_conf 783666540057730671799825998868899999999998639938998245678999989998587887727-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 16666530001899998752059988996575879999999998739701020004788888999999755304679998
Q gi|254780724|r 303 PPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPS 382 (483)
Q Consensus 303 ~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~ 382 (483)
--.+.++.+.+...-..+||.+||.-|- ++...-..+-+|+.+-+. +.-..|..+++..+ +
T Consensus 141 -----l~set~le~Il~~i~~~kP~~lIIDSIQ-----T~~~~~~~s~pGsvsQVR-----eca~~L~~~AK~~~--i-- 201 (372)
T cd01121 141 -----LLAETNLEDILASIEELKPDLVIIDSIQ-----TVYSSELTSAPGSVSQVR-----ECTAELMRFAKERN--I-- 201 (372)
T ss_pred -----EEECCCHHHHHHHHHHHCCCEEEEECHH-----HCCCCCCCCCCCCHHHHH-----HHHHHHHHHHHHCC--C--
T ss_conf -----8843569999999997199889995622-----020377677998789999-----99999999998619--7--
Q ss_pred HHHHHHHHHHCCEEEEEEECCC--CCEEEEEEEEEEE-EECCE
Q ss_conf 9999999742358899987699--9878999999984-14988
Q gi|254780724|r 383 QMVREIITSSLDVIVQTQRLRD--GSRRITNICEIVG-MEGNV 422 (483)
Q Consensus 383 ~~~~~~ia~avd~iV~~~r~~d--G~Rrv~~I~Ev~g-~e~~~ 422 (483)
++=+|=|+.+..+ |-|-+.++..++- +|++.
T Consensus 202 ---------~~~lVGHVTK~G~iAGPkvLEHmVDtVl~fEgd~ 235 (372)
T cd01121 202 ---------PIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred ---------EEEEEEEECCCCCCCCCHHHEEEEEEEEEECCCC
T ss_conf ---------3999987626886377403100213688751577
No 78
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00024 Score=49.01 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=36.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-++++..+.|+|++||||||+++.|+.+.++..--|.+.+.
T Consensus 23 nl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~ 65 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65 (229)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 9998799999999999980999999996686678738999999
No 79
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.0013 Score=43.77 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=35.3
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8986225884899818888888999999830387676799964
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..+-++.+-.+-+.|..||||||++++++..+++..--|++..
T Consensus 343 vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~~~~~G~I~~~G 385 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 4003589958999767876689999998566466786799999
No 80
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0045 Score=40.08 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=99.0
Q ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCEEEEECCHHHC---
Q ss_conf 76546678886506998899999898622---58848998188888889999998303---8767679996421312---
Q gi|254780724|r 220 KKDKLTLDHLVSFGAVTAEGARLLQIIGR---IRCNVLISGGTGSGKTTLLNCLTRYI---DKDERIVTCEDTAELQ--- 290 (483)
Q Consensus 220 ~~~~~~l~~l~~~g~~~~~~~~~l~~~v~---~~~nilVsG~TGSGKTT~L~al~~~i---~~~~rivtIED~~El~--- 290 (483)
....++.+.++....-....+.-...+-. ..--+.+.||+|+|||-||+|+.++. .++-|++.++...-+.
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v 159 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFV 159 (408)
T ss_pred CCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 89888554220477449999999998756688689579987999978999999999998629986488504899899999
Q ss_pred CC-------------CCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-H---HHHHHCCCC
Q ss_conf 56-------------78756778741666653--00018999987520599889965758799999-9---999873970
Q gi|254780724|r 291 LQ-------------QPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVLD-L---LQAMNTGHD 351 (483)
Q Consensus 291 l~-------------~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~---l~A~~TGH~ 351 (483)
.. +...+-. -......++ ..-.+...+ +.|+.....|++.--|-+-... + +..=...
T Consensus 160 ~a~~~~~~~~Fk~~y~~dlllI-DDiq~l~gk~~~qeefFh~F-N~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~-- 235 (408)
T COG0593 160 KALRDNEMEKFKEKYSLDLLLI-DDIQFLAGKERTQEEFFHTF-NALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW-- 235 (408)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE-CHHHHHCCCHHHHHHHHHHH-HHHHHCCCEEEEECCCCCHHHCCCCHHHHHHHHC--
T ss_conf 9988504888887642673555-13867567715799999999-9888508879997078832211035889989863--
Q ss_pred EEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 102000478888899999975530467999899999997423
Q gi|254780724|r 352 GSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSL 393 (483)
Q Consensus 352 G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~av 393 (483)
|....+|..+-..-+.=|..++...+..+|.+++. ++++.+
T Consensus 236 Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~-~la~~~ 276 (408)
T COG0593 236 GLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLE-FLAKRL 276 (408)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
T ss_conf 05775279888999999999998658888879999-999970
No 81
>PRK13544 consensus
Probab=97.37 E-value=0.00043 Score=47.21 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=36.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
...++.+..+.+.||-||||||+|+.++++++|..--|++..
T Consensus 21 s~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~~G~I~~~G 62 (208)
T PRK13544 21 SFTAKQNSLTLVIGNNGSGKTSLLRLLAGLIPITHGNIKYNG 62 (208)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 589829949999999999899999999588068974899999
No 82
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.36 E-value=0.00058 Score=46.29 Aligned_cols=43 Identities=26% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
..-++.+..+.+.||.|||||||++.+++.++|..--+.++..
T Consensus 20 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~sG~i~~~g~ 62 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG 62 (201)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 7888799599999999999999999996677888529999999
No 83
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=97.36 E-value=0.00015 Score=50.32 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=38.0
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89862258848998188888889999998303876767999
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
+..-++++..+-++|+-|+||||+||.|+.+++|++=-|.|
T Consensus 371 ~sf~~~pG~~vAl~G~SGaGKSTLL~lLLGf~~P~~G~i~v 411 (570)
T TIGR02857 371 VSFTVEPGERVALVGPSGAGKSTLLNLLLGFVEPTEGAIVV 411 (570)
T ss_pred CCEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 54166387048886279997889999997157644646887
No 84
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.35 E-value=0.00027 Score=48.64 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=37.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
..-+.++..+.|+|++||||||+++.|+.+.+|..--|.|-+.
T Consensus 22 s~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~ 64 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH 64 (237)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 8998799999999999985999999996776579878999999
No 85
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.35 E-value=0.001 Score=44.63 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=65.7
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH-HHCCCC---CCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 8622588489981888888899999983038767679996421-312567---875677874166665300018999987
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA-ELQLQQ---PHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~-El~l~~---~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
+-++.+..+-+.|+-||||||+++.++..++|+.--+.+.... ...-+. ..-+.+...- +++.-.+-.+-.
T Consensus 21 l~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~~~~~gi~~v~qL-----SgG~~Qrv~iar 95 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQL-----SVGERQMVEIAR 95 (163)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCEECCC-----CHHHHHHHHHHH
T ss_conf 898799899999889989999999995776898578999999999999999998799489469-----989999999999
Q ss_pred HHHCCCCEEEECCC-C--CHHH----HHHHHH-HHCCCCEEEHHHCC
Q ss_conf 52059988996575-8--7999----999999-87397010200047
Q gi|254780724|r 321 CLRMRPERIILGEV-R--GPEV----LDLLQA-MNTGHDGSMGTIHA 359 (483)
Q Consensus 321 aLR~~PD~IiVGEi-R--g~Ea----~~~l~A-~~TGH~G~ltTlHa 359 (483)
+|-++|+.++..|- . |+.+ +.+++. ...|.. ++-+-|-
T Consensus 96 al~~~p~llilDEPt~gLD~~~~~~i~~~l~~l~~~G~t-il~vtH~ 141 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVA-VIFISHR 141 (163)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 997299999990975579999999999999999878989-9999384
No 86
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=97.35 E-value=0.00021 Score=49.43 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=42.4
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEE--ECCHHHCCCCCCE
Q ss_conf 9989862258848998188888889999998-303876767999--6421312567875
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLT-RYIDKDERIVTC--EDTAELQLQQPHV 296 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~-~~i~~~~rivtI--ED~~El~l~~~~~ 296 (483)
.=..+-++++--+.++|++||||+|+|++|- +|.|..-+|.+= ++-.+|---.++.
T Consensus 25 ~~v~l~V~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~ 83 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83 (224)
T ss_pred CCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHH
T ss_conf 67437873673588536888767899997663047468677776240476750768457
No 87
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0025 Score=41.92 Aligned_cols=38 Identities=37% Similarity=0.476 Sum_probs=27.8
Q ss_pred CEEEECCCCCCHHHHHHH-HHHHCCCCCCEE--EEECCHHH
Q ss_conf 489981888888899999-983038767679--99642131
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNC-LTRYIDKDERIV--TCEDTAEL 289 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~a-l~~~i~~~~riv--tIED~~El 289 (483)
+.||+|++|||||||... +.+.....++.+ |.|++++-
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~ 41 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEE 41 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 91587689999999999999999876997899995079999
No 88
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.34 E-value=0.0012 Score=44.12 Aligned_cols=39 Identities=36% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCCEEEECCCCCCHHHHHHH-HHHHCCC-CCCEE--EEECCHH
Q ss_conf 88489981888888899999-9830387-67679--9964213
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNC-LTRYIDK-DERIV--TCEDTAE 288 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~a-l~~~i~~-~~riv--tIED~~E 288 (483)
+..+||+|++|||||||-.. |.+.+-. .++.+ |.|++.+
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~ 66 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPE 66 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 9779998389999999999999999885599789998579999
No 89
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.34 E-value=0.00029 Score=48.42 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8986225884899818888888999999830387676799964
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+.+-++++..+.|+|++||||||+++.|+.+++|..--+++..
T Consensus 33 is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg 75 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 3899829999999999998499999999645467887899999
No 90
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.33 E-value=0.00034 Score=47.92 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=36.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++++..+.|.|++||||||+++.|+.++++..--|.|..
T Consensus 28 sl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I~idg 69 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDG 69 (207)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 889869999999999998799999999987288887899999
No 91
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.33 E-value=0.00082 Score=45.24 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.||.||||||+++.++.+++|+.--|++..
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g 66 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66 (228)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789869989999999998699999999728987886699899
No 92
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.32 E-value=0.0012 Score=44.22 Aligned_cols=42 Identities=29% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-+..+..+.+.||-||||||+|+.|+..++|+.--|.+..
T Consensus 21 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 62 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG 62 (204)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 779879989999999998599999999768888873799999
No 93
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.0022 Score=42.29 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 9999898622588489981888888899999983038767679996421
Q gi|254780724|r 239 GARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA 287 (483)
Q Consensus 239 ~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~ 287 (483)
+..-+.+-++.+-.|.|.|+-||||||||+.|++.++|+.--|.+-...
T Consensus 327 vl~~vsl~i~~GeriaIvG~NGsGKSTLlk~L~G~l~p~~G~i~~~~~v 375 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI 375 (638)
T ss_pred CCCCCCCEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 0137750563784799974787138899999728878888569984444
No 94
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=97.32 E-value=0.0071 Score=38.70 Aligned_cols=163 Identities=17% Similarity=0.254 Sum_probs=87.4
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCC-CC---CEEEECCCCCCHHHHHHHHHHHCC---CCCCEEEE--ECCHHHCC--
Q ss_conf 466788865069988999998986225-88---489981888888899999983038---76767999--64213125--
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRI-RC---NVLISGGTGSGKTTLLNCLTRYID---KDERIVTC--EDTAELQL-- 291 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~-~~---nilVsG~TGSGKTT~L~al~~~i~---~~~rivtI--ED~~El~l-- 291 (483)
.+|.++++. |..+.........+.+. +. .+.|.|++|||||.+|.|++.... ++.+++.+ ++-....+
T Consensus 4 ~~TFdnF~v-g~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~ 82 (219)
T pfam00308 4 RYTFENFVI-GSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDA 82 (219)
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 987102023-6838999999999996758767826998899998889999999999984999828884399999988999
Q ss_pred -------------CCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-HH---HHHHHCCCCE
Q ss_conf -------------678756778741666653--0001899998752059988996575879999-99---9998739701
Q gi|254780724|r 292 -------------QQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVL-DL---LQAMNTGHDG 352 (483)
Q Consensus 292 -------------~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-~~---l~A~~TGH~G 352 (483)
..-..+-+. ......++ ....+..++... +.+...|++.=-+.+... .+ +..=.. .|
T Consensus 83 l~~~~~~~f~~~l~~~d~l~iD-Di~~l~~~~~~ee~lf~l~N~~-~~~~~~lllts~~~p~~l~~~~~dL~SRL~--~g 158 (219)
T pfam00308 83 LRDNKIEAFKKSYRNVDLLLID-DIQFLAGKEKTQEEFFHTFNAL-HENNKQIVLTSDRPPKELEGFEDRLRSRFE--WG 158 (219)
T ss_pred HHCCCHHHHHHHHHHCCHHHHC-CHHHHCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCHHHHHHHH--CC
T ss_conf 9818888999997632336522-3676568647899999999999-972986999779981002453277999986--87
Q ss_pred EEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 020004788888999999755304679998999999974
Q gi|254780724|r 353 SMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITS 391 (483)
Q Consensus 353 ~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~ 391 (483)
....++..+-..-..=|..++..-|..++.+++. +|+.
T Consensus 159 ~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~-yl~~ 196 (219)
T pfam00308 159 LIIAIEPPDLETRLAILRKKAEEENINIPNEVLN-FIAQ 196 (219)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHH
T ss_conf 5661169999999999999999849999999999-9998
No 95
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.30 E-value=0.0019 Score=42.75 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=78.2
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHH-H-HCCCCCCEE--EEECCHHHCCCC-------------CCEEEE-EEECCC---
Q ss_conf 2258848998188888889999998-3-038767679--996421312567-------------875677-874166---
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLT-R-YIDKDERIV--TCEDTAELQLQQ-------------PHVVRL-ETRPPN--- 305 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~-~-~i~~~~riv--tIED~~El~l~~-------------~~~v~~-~~~~~~--- 305 (483)
+..+..+||+|++|||||+|...++ . .....++.+ +.|++.+--..+ ...... ...+..
T Consensus 16 i~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~g~l~i~d~~~~~~~~ 95 (231)
T pfam06745 16 IPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEEGKLAIIDASTSGIGI 95 (231)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCC
T ss_conf 82996999985897259999999999999865896899981379999999999829985898646967898625442221
Q ss_pred CCCCCCCHHH----HHHHHHHHCCCCEEEECCCCCH-------HHHHHH----H-HHHCCCCEEEHHHCCCCHHHHHHHH
Q ss_conf 6653000189----9998752059988996575879-------999999----9-9873970102000478888899999
Q gi|254780724|r 306 IEGEGEITMR----DLVKNCLRMRPERIILGEVRGP-------EVLDLL----Q-AMNTGHDGSMGTIHANNARESFGRM 369 (483)
Q Consensus 306 ~e~~~~~t~~----~ll~~aLR~~PD~IiVGEiRg~-------Ea~~~l----~-A~~TGH~G~ltTlHa~s~~~ai~RL 369 (483)
.......+.. .+.+..-..+|+++++--+-.- +...++ . .-..|.. ++-|.|..+......
T Consensus 96 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~~~~~~r~~l~~l~~~lk~~g~t-~l~t~e~~~~~~~~~-- 172 (231)
T pfam06745 96 AEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLLKPAMAREILRRLKRVLKKLGVT-AIFTSEKPSGEGGIG-- 172 (231)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCCCCCCC--
T ss_conf 00112279999999999999971998899976416400588999999999999999976991-999982125777656--
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCC--EEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 9755304679998999999974235889998769998--7899999998414988998678987540
Q gi|254780724|r 370 EAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGS--RRITNICEIVGMEGNVIITQDLLKYEVM 434 (483)
Q Consensus 370 ~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~--Rrv~~I~Ev~g~e~~~~~~~~if~~~~~ 434 (483)
...+.. ..+|-||++.....+. +|..+|.-.-|.. .-..++.|+.+
T Consensus 173 ------------~~~~~~---~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~----~~~~~~~f~It 220 (231)
T pfam06745 173 ------------GYGVEE---FVVDGVIRLDLKEIEGELVRTIEIVKMRGTP----HSMKRYPFEIT 220 (231)
T ss_pred ------------CCCHHH---HEEEEEEEEEEECCCCEEEEEEEEEECCCCC----CCCCEEEEEEE
T ss_conf ------------763011---1003699999882499899999999866998----78947999990
No 96
>PRK08233 hypothetical protein; Provisional
Probab=97.30 E-value=0.00021 Score=49.39 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=26.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHH
Q ss_conf 84899818888888999999830387676799964213
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAE 288 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~E 288 (483)
..|.|+|||||||||+.++|...+|.. .++. -|...
T Consensus 4 ~IIgIaGgSgSGKTtla~~l~~~l~~~-~~~~-~D~y~ 39 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNS-KALY-FDRYD 39 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC-EEEE-ECCCC
T ss_conf 899996888678999999999974677-5899-66655
No 97
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.30 E-value=0.00033 Score=48.04 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=34.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.|+|++||||||+|++++.++++..--+.+..
T Consensus 21 nl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~~~ 62 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSN 62 (218)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 999869999999999998099999998555656776499898
No 98
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.30 E-value=0.00046 Score=47.02 Aligned_cols=90 Identities=26% Similarity=0.264 Sum_probs=54.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCC------CCCEE----------EEEEECCCCCC
Q ss_conf 862258848998188888889999998303876767999642131256------78756----------77874166665
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQ------QPHVV----------RLETRPPNIEG 308 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~------~~~~v----------~~~~~~~~~e~ 308 (483)
.-+..+..+.+.|+-||||||+++.++..+++..--|.+.+..=-.++ ....+ .+.-+.. .+=
T Consensus 20 ~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~l~~~~l~~~~~~~~-~~L 98 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPF-NEL 98 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCHHHHHHHHCCCHHHHCCCH-HHC
T ss_conf 7886997999998999889999999957989987289999999896999999554649999999859977864991-037
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 300018999987520599889965758
Q gi|254780724|r 309 EGEITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 309 ~~~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
+++--.+-++-.+|=++|+.++..|--
T Consensus 99 SGGqkQrv~iA~aL~~~P~ililDEPt 125 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 999999999999998689647885875
No 99
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00095 Score=44.81 Aligned_cols=81 Identities=23% Similarity=0.193 Sum_probs=52.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 986225884899818888888999999830387676799964213125-6787567787416666530001899998752
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQL-QQPHVVRLETRPPNIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l-~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aL 322 (483)
.+-++.+-.+.|.||.||||||+|+.+..+..++.--|.+.+..--.+ ++...+.+..+..... ...|..+-+...|
T Consensus 22 s~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~Lf--p~ltV~eNi~~~l 99 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALF--RHMTVFDNVAFGL 99 (239)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCC--CCCCHHHHHHHHH
T ss_conf 86988998999999999779999999976999986399999999999996567767981782106--7996999998799
Q ss_pred HCCC
Q ss_conf 0599
Q gi|254780724|r 323 RMRP 326 (483)
Q Consensus 323 R~~P 326 (483)
|.++
T Consensus 100 ~~~~ 103 (239)
T cd03296 100 RVKP 103 (239)
T ss_pred HHCC
T ss_conf 7335
No 100
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.30 E-value=0.00025 Score=48.88 Aligned_cols=46 Identities=28% Similarity=0.321 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 9998986225884899818888888999999830387676799964
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+=+..-++++..+.|.|++||||||+++.|+.+.+|+.--|.|-+
T Consensus 357 L~~is~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 402 (593)
T PRK10790 357 LKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (593)
T ss_pred HHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 4260104489978998799988689999999985567899416599
No 101
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.29 E-value=0.0003 Score=48.34 Aligned_cols=45 Identities=33% Similarity=0.431 Sum_probs=38.4
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 998986225884899818888888999999830387676799964
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.=+..-++++..+.|.|++||||||+++.|+.+.+|+.--+.|-+
T Consensus 359 ~~isl~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg 403 (581)
T PRK11176 359 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 403 (581)
T ss_pred CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 066335799944312289998678999999853667887487898
No 102
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00094 Score=44.85 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=51.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 9862258848998188888889999998303876767999642--13125678756778741666653000189999875
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
.+-++.+..+.|.||.||||||+|+.++...+|+.--|++.+. ..+.... ..+.+..+..... ...|..+-+...
T Consensus 19 s~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~p~~G~I~~~G~di~~~~~~~-r~ig~vfQ~~~Lf--p~~tV~eNi~~~ 95 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK-RDISYVPQNYALF--PHMTVYKNIAYG 95 (235)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH-CCEEEECCCCCCC--CCCCHHHHHHHH
T ss_conf 8798899899999999635999999997499999659999999999999767-8978945798668--999099999999
Q ss_pred HHC
Q ss_conf 205
Q gi|254780724|r 322 LRM 324 (483)
Q Consensus 322 LR~ 324 (483)
||.
T Consensus 96 l~~ 98 (235)
T cd03299 96 LKK 98 (235)
T ss_pred HHH
T ss_conf 987
No 103
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.27 E-value=0.00034 Score=47.89 Aligned_cols=41 Identities=34% Similarity=0.427 Sum_probs=34.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98622588489981888888899999983038767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
..-++++..|-|.||||+||||+.|-|-.-.+|+.--+.|.
T Consensus 355 SF~~KAG~TvAIVGPTGAGKTTLiNLLQRVydP~~G~I~ID 395 (592)
T TIGR01192 355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPKVGQILID 395 (592)
T ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 36652475689877899717899887753106986548872
No 104
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27 E-value=0.0015 Score=43.48 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=43.8
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCC-HHHHHHHHHHHC
Q ss_conf 225884899818888888999999830387-676799964213125678756778741666653000-189999875205
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEI-TMRDLVKNCLRM 324 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~-t~~~ll~~aLR~ 324 (483)
..+..++++.||+|+||||+++++...... ...++.+.-+ ++.-.. . ....... ............
T Consensus 16 ~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~-~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~ 83 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS-DLLEGL--V---------VAELFGHFLVRLLFELAEKA 83 (151)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHH-HCCHHH--H---------HHHHHHHHHHHHHHHHHHHC
T ss_conf 87998089989999886599999999712137982785477-704677--7---------75760577889899999976
Q ss_pred CCCEEEECCCCC
Q ss_conf 998899657587
Q gi|254780724|r 325 RPERIILGEVRG 336 (483)
Q Consensus 325 ~PD~IiVGEiRg 336 (483)
.|..+++-|+-.
T Consensus 84 ~~~vl~iDEi~~ 95 (151)
T cd00009 84 KPGVLFIDEIDS 95 (151)
T ss_pred CCCEEEEECHHH
T ss_conf 998698201665
No 105
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.27 E-value=0.005 Score=39.76 Aligned_cols=152 Identities=19% Similarity=0.312 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHHH--------CCCCCCEEEEEEECCCC
Q ss_conf 89999989862258848998188888889999998303876767999--642131--------25678756778741666
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAEL--------QLQQPHVVRLETRPPNI 306 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~El--------~l~~~~~v~~~~~~~~~ 306 (483)
.|.-..|---.-++..+|++|.+|-||+|||--++..+....+++.+ |++.+= .+...|. .+
T Consensus 77 ~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~~vLYvSGEES~~Qik~RA~RLg~~~~~l-~l------- 148 (454)
T PRK11823 77 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGGKVLYVSGEESLQQIKLRAERLGLPSDNL-YL------- 148 (454)
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCC-EE-------
T ss_conf 5665221587206648995079988899999999999855995799815015789999999758888873-78-------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 65300018999987520599889965758799999999987397010200047888889999997553046799989999
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~ 386 (483)
-.+.++.+.+......+||.+||.-|-. +...-..|-+|+.+-+ ++.-..|..+++..+ ++
T Consensus 149 --~~et~l~~Il~~i~~~~P~~lIIDSIQT-----~~~~~~~s~pGsvsQV-----re~a~~L~~~AK~~~--i~----- 209 (454)
T PRK11823 149 --LAETNLEDILATIEEEKPDLVVIDSIQT-----MYSPELESAPGSVSQV-----RECAAELTRLAKQSG--IA----- 209 (454)
T ss_pred --EECCCHHHHHHHHHHHCCCEEEEECHHE-----EEECCCCCCCCCHHHH-----HHHHHHHHHHHHHCC--CC-----
T ss_conf --8536899999999860998899943111-----5415667789978999-----999999999997449--82-----
Q ss_pred HHHHHHCCEEEEEEECCC--CCEEEEEEEEEE-EEECC
Q ss_conf 999742358899987699--987899999998-41498
Q gi|254780724|r 387 EIITSSLDVIVQTQRLRD--GSRRITNICEIV-GMEGN 421 (483)
Q Consensus 387 ~~ia~avd~iV~~~r~~d--G~Rrv~~I~Ev~-g~e~~ 421 (483)
+=+|=|+.+..+ |-|-+.++..++ -+||+
T Consensus 210 ------~~lVGHVTKdG~iAGPkvLEHmVDtVl~fEGd 241 (454)
T PRK11823 210 ------VFLVGHVTKEGAIAGPRVLEHMVDTVLYFEGD 241 (454)
T ss_pred ------EEEEEEECCCCCCCCCHHHHHHHCEEEEECCC
T ss_conf ------89999772677646614522201046875157
No 106
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.27 E-value=0.00041 Score=47.35 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=36.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++++..+.|+|++||||||+++.|+.++++..--|.+.+
T Consensus 41 nl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg 82 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG 82 (257)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 899879999999999998199999999605667888899998
No 107
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00037 Score=47.67 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=36.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-+..+..+.+.||.||||||+|+.++..++|+.--|++...
T Consensus 21 sl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~~~G~ 63 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPPQHGSITLDGK 63 (255)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 7798699899999999846999999997599889971857996
No 108
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.25 E-value=0.0004 Score=47.41 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=33.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-+..+..+.|.|++||||||+++.|+.++++. --|.|.+
T Consensus 24 sf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~-G~I~idg 64 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDG 64 (275)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEECC
T ss_conf 7998799999999999997999999996035789-5399998
No 109
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.24 E-value=0.00095 Score=44.82 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=48.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-CCHHHCCCCCCE----EEEEEECC-----CCCCCCCCHHHHHHHHHH
Q ss_conf 89981888888899999983038767679996-421312567875----67787416-----666530001899998752
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCE-DTAELQLQQPHV----VRLETRPP-----NIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i~~~~rivtIE-D~~El~l~~~~~----v~~~~~~~-----~~e~~~~~t~~~ll~~aL 322 (483)
.+|+|-=||||||+||.++..- +..|+..|. |-.|+.+++... .....-.. ...+.-.-++.+++....
T Consensus 3 ~iitGFLGaGKTTll~~lL~~~-~~~~~avIvNEfG~~~ID~~ll~~~~~~v~el~~GCiCCs~~~dl~~~l~~l~~~~~ 81 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ-HGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEECCCCCHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8998488899999999998478-899779997076554631667637882499933871465225158999999999765
Q ss_pred --HCCCCEEEECCCCCH-HHHHHHHH
Q ss_conf --059988996575879-99999999
Q gi|254780724|r 323 --RMRPERIILGEVRGP-EVLDLLQA 345 (483)
Q Consensus 323 --R~~PD~IiVGEiRg~-Ea~~~l~A 345 (483)
..+||+|+| |.-|. +-..++++
T Consensus 82 ~~~~~~d~iiI-E~SGla~P~~i~~~ 106 (158)
T cd03112 82 AGKIAFDRIVI-ETTGLADPGPVAQT 106 (158)
T ss_pred CCCCCCCEEEE-ECCCCCCCHHHHHH
T ss_conf 15788788999-63687882899998
No 110
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.24 E-value=0.00046 Score=47.03 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++++..+-|.|++||||||+++.|+.+.|. +--|+|-+
T Consensus 370 s~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~~p~-~G~I~i~g 410 (588)
T PRK11174 370 NFTLPAGQRVALVGPSGAGKTSLLNALLGFLPY-QGSLKING 410 (588)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEECC
T ss_conf 699749978999899986499999999872898-83899999
No 111
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.23 E-value=0.00084 Score=45.18 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=36.9
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 89862258848998188888889999998303876767999642
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
+..-+..+..+.+.||-||||||+|+.|+..++++.--|.+...
T Consensus 30 isf~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~~G~I~~~g~ 73 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73 (214)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 38898189899999999987999999997697788419999999
No 112
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.22 E-value=0.00048 Score=46.89 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=36.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.|.|+.||||||+++.|+.++++..--|.+..
T Consensus 24 sl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 65 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG 65 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 899869989999999999899999999679718984899999
No 113
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0014 Score=43.54 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+.+..+..+.|.||-||||||++++++..++|..--+.+...
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~ 66 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66 (254)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 8997489689999998888899999996787677426998366
No 114
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.21 E-value=0.0005 Score=46.74 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+..+.|.||.||||||+++.++.+.+|+.--|.+..
T Consensus 27 s~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p~~G~I~~~g 68 (225)
T PRK10247 27 NFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68 (225)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 799859969999999999999999999646688876599999
No 115
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.21 E-value=0.00074 Score=45.56 Aligned_cols=108 Identities=25% Similarity=0.323 Sum_probs=57.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC-CHHHCCCCCC-------EEEEE---EECCCCCCCCCCHHHHHHHH
Q ss_conf 4899818888888999999830387676799964-2131256787-------56778---74166665300018999987
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED-TAELQLQQPH-------VVRLE---TRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED-~~El~l~~~~-------~v~~~---~~~~~~e~~~~~t~~~ll~~ 320 (483)
-.++||=-|||||||||.++.. +...|+.+|+. -.|..+++.- ++.+. .+.+ ..+.-.-++.+++..
T Consensus 6 VtiltGFLGaGKTTlL~~lL~~-~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs-~~~dl~~~l~~l~~~ 83 (317)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCS-RSNELEDALLDLLDN 83 (317)
T ss_pred EEEEEECCCCCHHHHHHHHHHC-CCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEE-ECCHHHHHHHHHHHH
T ss_conf 8998308888999999999727-78997899983761453329887356532688447736873-052289999999986
Q ss_pred HHHC--CCCEEEECCCCCH-HHHHHHHHHHC-----CC---CEEEHHHCCCCH
Q ss_conf 5205--9988996575879-99999999873-----97---010200047888
Q gi|254780724|r 321 CLRM--RPERIILGEVRGP-EVLDLLQAMNT-----GH---DGSMGTIHANNA 362 (483)
Q Consensus 321 aLR~--~PD~IiVGEiRg~-Ea~~~l~A~~T-----GH---~G~ltTlHa~s~ 362 (483)
..+. .+|+|+| |.-|. +-..++++..+ .| .|++|.+-|-..
T Consensus 84 ~~~~~~~~D~IiI-EtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~ 135 (317)
T PRK11537 84 LDRGNIQFDRLVI-ECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHA 135 (317)
T ss_pred HHCCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHH
T ss_conf 6435777547999-625778839999998612565653203655999866555
No 116
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00049 Score=46.79 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=34.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.|++||||||+++.+.+.++|..--|.+.+
T Consensus 27 sl~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p~~G~I~~~g 68 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD 68 (286)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 779869989999999998199999999707888887599998
No 117
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.00022 Score=49.30 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH-H-CCCCCCEEEE-ECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 588489981888888899999983-0-3876767999-642131256787567787416666530001899998752059
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTR-Y-IDKDERIVTC-EDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~-~-i~~~~rivtI-ED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
.++.|.+.||||.||||++.-|+. + +....++..| =|++-. ...-+..-+...-++.-....+..++-.+.-|.+
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRI--gAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~ 299 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI--AAIEQLKRYADTMGMPFYPVKDIKKFKETLARDG 299 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCH--HHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCC
T ss_conf 76299998999988899999999999997499279995266537--7999999999985994599518999999998569
Q ss_pred CCEEEECCC----CCHHHH----HHHHHHHCC-CCEEEHHHCCCCHHHHHHHHHH
Q ss_conf 988996575----879999----999998739-7010200047888889999997
Q gi|254780724|r 326 PERIILGEV----RGPEVL----DLLQAMNTG-HDGSMGTIHANNARESFGRMEA 371 (483)
Q Consensus 326 PD~IiVGEi----Rg~Ea~----~~l~A~~TG-H~G~ltTlHa~s~~~ai~RL~~ 371 (483)
-|.|+|.-. |+.+-. .++++...- +.=++-.+-|.+-...+.....
T Consensus 300 ~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~ 354 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9999992999897899999999999986366788517999978899899999999
No 118
>KOG0735 consensus
Probab=97.20 E-value=0.00097 Score=44.76 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=58.5
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCE-EEEECCHHHCCCCCCEEEEEEECCCC
Q ss_conf 88650699889999989862258848998188888889999998303876767-99964213125678756778741666
Q gi|254780724|r 228 HLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERI-VTCEDTAELQLQQPHVVRLETRPPNI 306 (483)
Q Consensus 228 ~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ri-vtIED~~El~l~~~~~v~~~~~~~~~ 306 (483)
+++...+...++....-..+-..+||++.||.|||||+++.+++.+...+.-. +-+=|--++.... .
T Consensus 409 d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~------------~ 476 (952)
T KOG0735 409 DFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS------------L 476 (952)
T ss_pred CEEECCHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHH------------H
T ss_conf 6244304555443230454334661898679987776999999987515650699997522104204------------8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 6530001899998752059988996575
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIILGEV 334 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiVGEi 334 (483)
.+..-.+...+-.|+++.|.+|++.-+
T Consensus 477 -e~iQk~l~~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735 477 -EKIQKFLNNVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred -HHHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf -999999999999988637808997050
No 119
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.20 E-value=0.00095 Score=44.81 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=35.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+--+.++|+-|+||||||+=|+....|.+=.|-|+-
T Consensus 22 ~l~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G 63 (215)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAG 63 (215)
T ss_pred CEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 447527740788727786178999999852698758088887
No 120
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0013 Score=43.93 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=34.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+-+.|+-||||||+++.+++.++|+.--+.+.-
T Consensus 44 sf~i~~GEivgllG~NGaGKSTLlk~I~Gl~~P~~G~I~~~G 85 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 788859989999989986199999999679888874799998
No 121
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.19 E-value=0.00069 Score=45.77 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=74.6
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-CCHHHCCCCCCEEEEEE-----ECCCCCC--------
Q ss_conf 898622588489981888888899999983038767679996-42131256787567787-----4166665--------
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE-DTAELQLQQPHVVRLET-----RPPNIEG-------- 308 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE-D~~El~l~~~~~v~~~~-----~~~~~e~-------- 308 (483)
+...++++..++|.|+.|+||||+++|+.+.-|-..-.+.+. |..=+.+||.-.++.-+ +.++...
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~ 491 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELV 491 (604)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHH
T ss_conf 52654799879987899987889999996458567874416898755771488777876589998089997779959999
Q ss_pred -----------------------------CCCCHHHHHHHHHHHCCCCEEEECCCCC---HHHH-HHHHHHHC---CCCE
Q ss_conf -----------------------------3000189999875205998899657587---9999-99999873---9701
Q gi|254780724|r 309 -----------------------------EGEITMRDLVKNCLRMRPERIILGEVRG---PEVL-DLLQAMNT---GHDG 352 (483)
Q Consensus 309 -----------------------------~~~~t~~~ll~~aLR~~PD~IiVGEiRg---~Ea~-~~l~A~~T---GH~G 352 (483)
+..+.|+ -.|=+.|+++++.|.-+ .+.. .|.|++.. +- .
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA----RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~-t 566 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA----RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-T 566 (604)
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHCCHHHHHHHHHH----HHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCC-E
T ss_conf 999981919899987332757664585278999999----99970999899806011259578999999998548997-8
Q ss_pred EEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 02000478888899999975530
Q gi|254780724|r 353 SMGTIHANNARESFGRMEAMIAM 375 (483)
Q Consensus 353 ~ltTlHa~s~~~ai~RL~~m~~~ 375 (483)
+++.-|-.+...--.+...+...
T Consensus 567 vISV~Hr~tl~~~h~~~l~l~~~ 589 (604)
T COG4178 567 VISVGHRPTLWNFHSRQLELLDD 589 (604)
T ss_pred EEEECCCHHHHHHHHHHEEECCC
T ss_conf 99955600057887543231146
No 122
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00054 Score=46.51 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.|++||||||++++|.+.++|..--+.+.+
T Consensus 46 s~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p~~G~I~i~~ 87 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD 87 (320)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 558859989999949998499999999758889983599865
No 123
>PRK13542 consensus
Probab=97.18 E-value=0.00055 Score=46.47 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++++..+.+.|+-||||||||+.|+.+++|+.--|++..
T Consensus 38 sl~i~~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~I~~~G 79 (224)
T PRK13542 38 DISLAPGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGDLYWRG 79 (224)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 678759979999999999999999999579788852899999
No 124
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=97.18 E-value=0.00091 Score=44.94 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4667888650699889999989862258---84899818888888999999830387
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIR---CNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~---~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
+-++++|.-..---.+...||.....++ ..+|.+||.||||||++..|+..+..
T Consensus 15 P~~l~ELAVHKKKV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ 71 (490)
T pfam03215 15 PRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGI 71 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 887899855354399999999998547777318998798998899999999997596
No 125
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=97.18 E-value=0.00056 Score=46.42 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||-||||||+++.++..++++.--|++.+
T Consensus 23 sl~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~~~~G~I~i~g 64 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD 64 (241)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789839979999889998699999999678888876277634
No 126
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.17 E-value=0.0011 Score=44.45 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHH--CCCCCCEEEE
Q ss_conf 986225884899818888888999999830--3876767999
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRY--IDKDERIVTC 283 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~--i~~~~rivtI 283 (483)
.+.++.+..+.+.||-||||||+++.++.+ ..+..--+.+
T Consensus 20 sl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~ 61 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61 (200)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 568879989999968999999999997077777852007999
No 127
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.17 E-value=0.00052 Score=46.61 Aligned_cols=40 Identities=33% Similarity=0.248 Sum_probs=35.0
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-+..+..+.+.||.||||||||+.+....+|+.--+++.+
T Consensus 26 ~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g 65 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG 65 (218)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 9869989999999998699999999669999964999999
No 128
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.17 E-value=0.00057 Score=46.38 Aligned_cols=46 Identities=28% Similarity=0.347 Sum_probs=37.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHC
Q ss_conf 98622588489981888888899999983038767679996421312
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQ 290 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~ 290 (483)
...++++..+.|.|++||||||+++.|+.+.+++.--+.| |-.++.
T Consensus 349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~ 394 (567)
T COG1132 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIR 394 (567)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-CCEEHH
T ss_conf 2775489878885588885789999998615888836989-999777
No 129
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.16 E-value=0.00057 Score=46.35 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=37.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
...+.++..+.+.|+-||||||+|+.|++.+++++--|.+.+.
T Consensus 22 sf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~p~~G~I~~~g~ 64 (206)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLLAGLLPPAAGTIKLDGG 64 (206)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 7898699499998999998999999995887888518999997
No 130
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.0036 Score=40.77 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=55.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEE---CCHHHCCCCCCEEEEEEECCCCCC----CCCCH-
Q ss_conf 9862258848998188888889999998303876--7679996---421312567875677874166665----30001-
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCE---DTAELQLQQPHVVRLETRPPNIEG----EGEIT- 313 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIE---D~~El~l~~~~~v~~~~~~~~~e~----~~~~t- 313 (483)
..-++++..+.+.||.||||||+|+.|+....+. .--+++. .+.++. ..+....+...... ...+.
T Consensus 27 s~~i~~Ge~~~llGpnGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~----~~igyv~q~~~~~~~~tv~e~l~~ 102 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ----RSTGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCHHHH----HHEEEEECCHHCCCCCHHHHHHHH
T ss_conf 8899288399999999998899999983798788317899987827667756----227999411330734549999986
Q ss_pred ------------HHHHHHHHHHCCCCEEEECCCC---CHHH----HHHHH-HHHCCCCEEEHHHC
Q ss_conf ------------8999987520599889965758---7999----99999-98739701020004
Q gi|254780724|r 314 ------------MRDLVKNCLRMRPERIILGEVR---GPEV----LDLLQ-AMNTGHDGSMGTIH 358 (483)
Q Consensus 314 ------------~~~ll~~aLR~~PD~IiVGEiR---g~Ea----~~~l~-A~~TGH~G~ltTlH 358 (483)
.+-.+-.+|=++|+.++..|-- |..+ +.+++ ....|.. ++.+.|
T Consensus 103 ~~~l~~LS~gqrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~t-iii~th 166 (192)
T cd03232 103 SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQA-ILCTIH 166 (192)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf 6777337976765899999984499889984887688989999999999999969999-999983
No 131
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.16 E-value=0.00058 Score=46.31 Aligned_cols=43 Identities=30% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-+..+..+.|.||.||||||+|+.+.....|+.--+++.+.
T Consensus 18 sl~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~~p~sG~i~~~g~ 60 (206)
T TIGR03608 18 NLTIEKGKMVAIVGESGSGKSTLLNIIGLLEKPDSGQVYLNGQ 60 (206)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 7798699899998799970999999997599989759999999
No 132
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00059 Score=46.28 Aligned_cols=42 Identities=26% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+-.+.|.|+.||||||+++.|+..++|+.--|.+..
T Consensus 27 sl~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I~i~G 68 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG 68 (279)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 768879989999999996599999999728888896499999
No 133
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.15 E-value=0.00043 Score=47.18 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHH-C--CCCCCEEEE-ECCHHHCCCCCCEEEEEEECCCCCC---CCCCHHHHHHHH
Q ss_conf 25884899818888888999999830-3--876767999-6421312567875677874166665---300018999987
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRY-I--DKDERIVTC-EDTAELQLQQPHVVRLETRPPNIEG---EGEITMRDLVKN 320 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~-i--~~~~rivtI-ED~~El~l~~~~~v~~~~~~~~~e~---~~~~t~~~ll~~ 320 (483)
..++.|...||||-||||+|.-|... . ....++..| =|++-+ ...-+.+.+...-++.- ...-++.+.+.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~vv~~~~el~~ai~- 277 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI--GAVEQLKTYADIMGVPLEVVYSPKELAEAIE- 277 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHHHHCCCEEEECCHHHHHHHHH-
T ss_conf 4685799989988758879999999997532576068997144115--2899999999986995599639999999999-
Q ss_pred HHHCCCCEEEECCC-C---CHHH----HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHH
Q ss_conf 52059988996575-8---7999----9999998739701020004788888999999
Q gi|254780724|r 321 CLRMRPERIILGEV-R---GPEV----LDLLQAMNTGHDGSMGTIHANNARESFGRME 370 (483)
Q Consensus 321 aLR~~PD~IiVGEi-R---g~Ea----~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~ 370 (483)
.|+.. |.|+|.-+ | +.+- .+++++..+-+ +.-++-|++-...+....
T Consensus 278 ~l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~--~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 278 ALRDC-DVILVDTAGRSQYDKEKIEELKELIDVSHSIE--VYLVLSATTKYEDLKEII 332 (407)
T ss_pred HHHCC-CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE--EEEEEECCCCHHHHHHHH
T ss_conf 85318-88999689988337899999999970356621--799984576468899999
No 134
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.14 E-value=0.00055 Score=46.49 Aligned_cols=46 Identities=30% Similarity=0.283 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 9998986225884899818888888999999830387676799964
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+=+..-++++..+.|+|++||||||+++.|+++.+|..--|.+..
T Consensus 481 l~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~idg 526 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred HCCHHHEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 1363118879978999805898788999985567589988799898
No 135
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=97.14 E-value=0.00031 Score=48.21 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5884899818888888999999830387
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
.-...+|||+|||||||+|-|++-.+-.
T Consensus 29 sl~~f~i~G~tGAGKtsLldAI~yALYG 56 (1063)
T TIGR00618 29 SLKLFVICGKTGAGKTSLLDAITYALYG 56 (1063)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 2573677788998354599999998728
No 136
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0028 Score=41.55 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH------H-HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 88489981888888899999983038767679996421------3-1256787567787416666530001899998752
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA------E-LQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~------E-l~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aL 322 (483)
+..+.|.||.||||||+|+.+....+++.--|.+.... . ...++...+.+..+..+..+ ..|..+-+...|
T Consensus 23 ge~~~iiGpSGsGKSTll~~i~GL~~p~sG~I~~~G~~~~~~~~~~~~~~~~r~ig~VfQ~~~Lfp--~ltV~eNi~~~l 100 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFP--HLNVRENLAFGL 100 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCEEEEECCCCCCC--CCCHHHHHHHHH
T ss_conf 979999999973599999999849999964999999997665412467713487589767876578--891999998887
Q ss_pred HCC
Q ss_conf 059
Q gi|254780724|r 323 RMR 325 (483)
Q Consensus 323 R~~ 325 (483)
|..
T Consensus 101 ~~~ 103 (214)
T cd03297 101 KRK 103 (214)
T ss_pred CCC
T ss_conf 679
No 137
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=97.13 E-value=0.00065 Score=45.95 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=26.9
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHH----H-CCCCCCEEEE
Q ss_conf 22588489981888888899999983----0-3876767999
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTR----Y-IDKDERIVTC 283 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~----~-i~~~~rivtI 283 (483)
+..-|+.+|.|||||||||+|+.|+. + ..++-+++..
T Consensus 423 ~~d~GHt~I~G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~f 464 (789)
T PRK13853 423 EHDVGMTAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVFF 464 (789)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788774488789999889999999999997422357708999
No 138
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.13 E-value=0.00068 Score=45.81 Aligned_cols=42 Identities=31% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+--+.|.||.||||||+||-+...-.|+.-.+.+..
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 588749989999899999899999999646678884699998
No 139
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.13 E-value=0.0015 Score=43.45 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=51.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCC---EEEEECCHHH---CCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 84899818888888999999830387676---7999642131---2567-875677874166665300018999987520
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDER---IVTCEDTAEL---QLQQ-PHVVRLETRPPNIEGEGEITMRDLVKNCLR 323 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~r---ivtIED~~El---~l~~-~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR 323 (483)
.||.|+|.+||||+||.|||-+.-+.++. ..++|.|.|. ..++ +| +.++=-| +-|...+...+-++..--
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p~~pn-v~lwDlP--G~Gt~~f~~~~Yl~~~~~ 78 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPN-VTLWDLP--GIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CEEECCC--CCCCCCCCHHHHHHHCCC
T ss_conf 1799955899868999999868898877758888874677862047999998-7697289--999876598999986585
Q ss_pred CCCC-EEEECCCCCHH
Q ss_conf 5998-89965758799
Q gi|254780724|r 324 MRPE-RIILGEVRGPE 338 (483)
Q Consensus 324 ~~PD-~IiVGEiRg~E 338 (483)
.+=| .||+---|=.+
T Consensus 79 ~~yD~fiiiss~rf~~ 94 (197)
T cd04104 79 SEYDFFIIISSTRFSS 94 (197)
T ss_pred CCCCEEEEEECCCCCH
T ss_conf 5457899983886414
No 140
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.13 E-value=0.00068 Score=45.83 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHHCCCCCHHHHHH---------HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 576546678886506998899999---------8986225884899818888888999999830387676799964
Q gi|254780724|r 219 FKKDKLTLDHLVSFGAVTAEGARL---------LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 219 ~~~~~~~l~~l~~~g~~~~~~~~~---------l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
|.+++-..-.+...|.-..++.+- ..+-++.+-.+.+.||.||||||+|+.+...++++.--|.|.|
T Consensus 10 FG~~~~~a~~~~~~g~~k~~i~~~tg~~vAV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~pt~G~I~i~~ 85 (382)
T TIGR03415 10 FGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKD 85 (382)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 2899899999998799989998833999989651748879989999999973499999999759998852999926
No 141
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.13 E-value=0.00065 Score=45.98 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 8622588489981888888899999983038767679996421
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA 287 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~ 287 (483)
+-++.+-.+.|.||.||||||+|+.++.+.+++.--|.+.+..
T Consensus 21 l~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~ 63 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD 63 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEE
T ss_conf 7986998999999998809999999976999986399999999
No 142
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.13 E-value=0.0089 Score=38.03 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEE
Q ss_conf 9999898622588489981888888899999983-038767679996
Q gi|254780724|r 239 GARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCE 284 (483)
Q Consensus 239 ~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIE 284 (483)
+-.+|---+..+..++|+|+.|+||||++-.++. ......+++.|.
T Consensus 8 lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yid 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99985699878879999899998499999999999863698699996
No 143
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00066 Score=45.90 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=49.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 9862258848998188888889999998303876767999642131256-787567787416666530001899998752
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~aL 322 (483)
.+-++.+..+.|.||.||||||+|+.+....+++.--|.+.+..=..++ +...+.+..+....- ...|..+-+...|
T Consensus 20 sl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~~~Lf--p~ltV~~Nva~~l 97 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALF--PHLTVFENIAFGL 97 (232)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCC--CCCCHHHHHHHHH
T ss_conf 74887998999999999839999999977999985399999999999995457756991488547--7891999987799
Q ss_pred HC
Q ss_conf 05
Q gi|254780724|r 323 RM 324 (483)
Q Consensus 323 R~ 324 (483)
|.
T Consensus 98 ~~ 99 (232)
T cd03300 98 RL 99 (232)
T ss_pred HH
T ss_conf 87
No 144
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0017 Score=43.03 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC--CCCCC---EEEE-ECCHHHCCCCCCEEEEEEECCCCCCC---CCCHHHHHHHH
Q ss_conf 8848998188888889999998303--87676---7999-64213125678756778741666653---00018999987
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYI--DKDER---IVTC-EDTAELQLQQPHVVRLETRPPNIEGE---GEITMRDLVKN 320 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i--~~~~r---ivtI-ED~~El~l~~~~~v~~~~~~~~~e~~---~~~t~~~ll~~ 320 (483)
.+.+...||||+||||++.-|..+. ....+ +..| -|++-. ....+.+.+...-++.-. ..-++..++..
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRi--gAveQLktya~il~vp~~v~~~~~dl~~~l~~ 251 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI--GAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
T ss_conf 6289998998875787999999999986267677379998078758--89999999999978806985788999999997
Q ss_pred HHHCCCCEEEECCC-CC---H----HHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHH
Q ss_conf 52059988996575-87---9----99999999873970102000478888899999
Q gi|254780724|r 321 CLRMRPERIILGEV-RG---P----EVLDLLQAMNTGHDGSMGTIHANNARESFGRM 369 (483)
Q Consensus 321 aLR~~PD~IiVGEi-Rg---~----Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL 369 (483)
..+-|+|+|.-. |. . |...++.+++.-+. ++-++-|++-...+...
T Consensus 252 --~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~-~~Lvlsat~~~~d~~~i 305 (388)
T PRK12723 252 --SKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAE-FHLAVSSTTKTSDIKEI 305 (388)
T ss_pred --HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEEECCCCCHHHHHHH
T ss_conf --2499999995899885689999999999974189845-99998798999999999
No 145
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.11 E-value=0.0091 Score=37.94 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=80.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCC-----CCCCCCCHHHHHHHHHH
Q ss_conf 2588489981888888899999983038767679996421312567875677874166-----66530001899998752
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPN-----IEGEGEITMRDLVKNCL 322 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~-----~e~~~~~t~~~ll~~aL 322 (483)
+.-+-|+++|++||||||+.+.+...... ..++.| |+.|+...+|+.-.+...... .......-...++..++
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~-~~~v~I-n~D~~r~~~P~y~~l~~~~~~~~~~~~~~~a~~~~~~~~~~a~ 87 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELARALLEELGG-GNVVRI-DPDELRTYHPDYDELQKADPKDASELTQPDASRWVEKLIDYAI 87 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC-CCCEEE-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69879999579988889999999875378-993897-1358788777478655407677899989999999999999999
Q ss_pred HCCCCEEEECCCCCHHHH-HHHHHH-HCCCCEEEHHHCCCCHHHHHHHHHHHHHHC---CCCCCHHHHH
Q ss_conf 059988996575879999-999998-739701020004788888999999755304---6799989999
Q gi|254780724|r 323 RMRPERIILGEVRGPEVL-DLLQAM-NTGHDGSMGTIHANNARESFGRMEAMIAMG---GFTLPSQMVR 386 (483)
Q Consensus 323 R~~PD~IiVGEiRg~Ea~-~~l~A~-~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~---~~~~~~~~~~ 386 (483)
..+-+.|+=|-.|+.+.. ..++.+ .-|.. +.-=+=+-++.-+..|...-.... |.-+|.+...
T Consensus 88 ~~r~n~iiegT~~~~~~~~~~~~~lk~~GY~-v~v~~Va~~~e~S~~r~~~Ry~~~~~~gR~v~~~~hd 155 (191)
T pfam06414 88 ERGYNIILEGTLRSPDVARKLARKLKAAGYE-VEVYVVAVPPELSWLGVLDRYEEELAAGRRVPKEVHD 155 (191)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHCCCE-EEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 7599989857778979999999999978997-9999998899999999999998510578748999999
No 146
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.002 Score=42.58 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=50.8
Q ss_pred CCCCCCCHHHHHHCCCCCHHHHHHH---------HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 5765466788865069988999998---------986225884899818888888999999830387676799964
Q gi|254780724|r 219 FKKDKLTLDHLVSFGAVTAEGARLL---------QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 219 ~~~~~~~l~~l~~~g~~~~~~~~~l---------~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
|.+++-..-.+.+.|....++.+-- .+-++.+-.+.|.|+.||||||+|+.+...++|+.--|.+..
T Consensus 14 fg~~~~~a~~~~~~g~~k~ei~~~tg~~vAv~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~gL~~Pt~G~I~i~G 89 (400)
T PRK10070 14 FGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDG 89 (400)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 2989899999987699989999864999989740768879999999999984699999999759998981899999
No 147
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.10 E-value=0.00042 Score=47.28 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=33.6
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 898622588489981888888899999983038767679996
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
+.+-++.+..+.|.|++||||||+++.++..+++..--+.+.
T Consensus 24 isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~ 65 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP 65 (204)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 489976998999999999858999999818952568952258
No 148
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.10 E-value=0.00076 Score=45.49 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-+..+..+.+.|+-|||||||++.++++++|+.--|++..
T Consensus 21 s~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~ 62 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62 (200)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789879979999889998799999999778588985699999
No 149
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.09 E-value=0.00042 Score=47.28 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEE
Q ss_conf 6225884899818888888999999830387--6767999
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDK--DERIVTC 283 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~--~~rivtI 283 (483)
=+..-|+.+|.|||||||||+|+.|+..... +-+++..
T Consensus 452 H~~dvGHtlIiGpTGsGKTvll~fl~aq~~ky~~~~vf~F 491 (818)
T PRK13830 452 HVDDVGHTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAF 491 (818)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8898650589899999889999999999864279838997
No 150
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00071 Score=45.68 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=35.6
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 862258848998188888889999998303876767999642
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
+-+..+..+.|.||.||||||+|+.+....+|+.--|.+.+.
T Consensus 22 l~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p~~G~I~~~g~ 63 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGT 63 (241)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 899999899999999833999999997499998559999999
No 151
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.08 E-value=0.026 Score=34.73 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=27.3
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 62258848998188888889999998303876
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
.++.+..|+|+||.|+||||+++.|+...|..
T Consensus 3 ~~~~g~livisGPSG~GK~tl~~~L~~~~p~~ 34 (208)
T PRK00300 3 MMRRGLLIVLSAPSGAGKSTLVRALLERDPND 34 (208)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 24188389999999889999999999729986
No 152
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00065 Score=45.97 Aligned_cols=41 Identities=34% Similarity=0.379 Sum_probs=34.3
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-++.+..+.|.|+.||||||+++.|...++|+.--+.+.+
T Consensus 15 l~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~~g 55 (276)
T PRK13634 15 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTIGE 55 (276)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 79989989999999996999999999749998874999999
No 153
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0024 Score=42.00 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.+.||.||||||+|+.++.+..++.--|.+.+
T Consensus 26 sl~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~p~~G~I~~~g 67 (351)
T PRK11432 26 DLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDG 67 (351)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 749889989999999964999999999769998836999999
No 154
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0009 Score=44.97 Aligned_cols=43 Identities=28% Similarity=0.248 Sum_probs=35.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-++.+..+.+.||-||||||+++.++..++++.--+++...
T Consensus 22 sl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~~G~I~~~g~ 64 (257)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELPPSSGEVRLFGR 64 (257)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECE
T ss_conf 7898699899999999987999999985675778756999365
No 155
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=97.06 E-value=0.00087 Score=45.06 Aligned_cols=42 Identities=33% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+-.+.|.|+.||||||++++++..++|+.--+.+..
T Consensus 26 s~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G~I~~~g 67 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 778879979999888998899999998567888887399746
No 156
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.06 E-value=0.0009 Score=44.98 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||-||||||+++.++.+++|..--+++..
T Consensus 19 s~~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i~i~g 60 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 (213)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789859989999999998699999999768788975899999
No 157
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0007 Score=45.74 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.|.|+.||||||+++.+.+.++|..--|.+.+
T Consensus 27 sl~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~V~i~G 68 (287)
T PRK13637 27 NIEIEDGEFVALIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG 68 (287)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 769879989999999993999999999739988872699999
No 158
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00079 Score=45.37 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 862258848998188888889999998303876767999642
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
+-++.+..+.+.||.||||||+|+.++...+|+.--|.+...
T Consensus 25 l~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~ 66 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE 66 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 898799899999999957999999997599988738999999
No 159
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.05 E-value=0.00089 Score=45.01 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+-.+.|.||.||||||+++.++..++|..--|++..
T Consensus 20 sl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g 61 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61 (205)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 788869989999889999899999999568577787389999
No 160
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=97.05 E-value=0.0073 Score=38.63 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=71.7
Q ss_pred HHHHCCCCCHH---HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEEECCH---HHCCCC-CCEE
Q ss_conf 88650699889---9999898622588489981888888899999983038767---679996421---312567-8756
Q gi|254780724|r 228 HLVSFGAVTAE---GARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE---RIVTCEDTA---ELQLQQ-PHVV 297 (483)
Q Consensus 228 ~l~~~g~~~~~---~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~---rivtIED~~---El~l~~-~~~v 297 (483)
.-.+.|.++.. +.+.|..+-....||-|+|.+|+||+||.|||-+.=+.++ ...++|.+. .|..|+ ||++
T Consensus 10 ~al~~g~l~~a~s~I~e~L~~~~~~~lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvvetT~~~~~Y~hp~~pnV~ 89 (375)
T pfam05049 10 TALREGNLQKVVSIIKKAIQEISSAPLKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVETTMKRTPYSHPHFPNVV 89 (375)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf 99965998999999999997544382479985489986789999874789877776876876632675567899999807
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCH--HHHHHHHHHHCCC
Q ss_conf 778741666653000189999875205998-8996575879--9999999987397
Q gi|254780724|r 298 RLETRPPNIEGEGEITMRDLVKNCLRMRPE-RIILGEVRGP--EVLDLLQAMNTGH 350 (483)
Q Consensus 298 ~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD-~IiVGEiRg~--Ea~~~l~A~~TGH 350 (483)
++--|. -|...+...+-++-.-=.+=| .|||.--|=. ++.-+-.....|-
T Consensus 90 -lwDLPG--~gt~~f~~~~Yl~~~~f~~yDfFiiiss~rf~~n~v~LAk~i~~mgK 142 (375)
T pfam05049 90 -LWDLPG--LGATNFTVETYLEEMKFSEYDFFIIISSERFSLNDVKLAKAIQRMGK 142 (375)
T ss_pred -EECCCC--CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf -962899--99899898999987485647789999677543201899999998389
No 161
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.05 E-value=0.00062 Score=46.10 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 9998986225884899818888888999999830387676799964
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-..+.++.+-.|+|+||.|+||+|||+.++..|+++.-.++-|-
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~G 64 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64 (223)
T ss_pred ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 3241366538854887678876688999999813699885288747
No 162
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.04 E-value=0.00084 Score=45.19 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-++.+-.+.|.||.||||||+|+.+.....|+.--|.+...
T Consensus 20 sl~i~~Ge~~~ivGpSGsGKSTLL~~i~gL~~p~~G~i~i~g~ 62 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGL 62 (213)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 7598899899999999844999999998199998649999999
No 163
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00084 Score=45.17 Aligned_cols=42 Identities=33% Similarity=0.401 Sum_probs=35.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.|+.||||||+++.+...++|..--|++.+
T Consensus 26 sl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~~~ 67 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67 (288)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 679859989999999994799999999748888885699999
No 164
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.03 E-value=0.029 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=13.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 48998188888889999998303
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i 274 (483)
++++.||.|+||||+.+.+....
T Consensus 39 s~Il~GPPG~GKTTlA~iiA~~~ 61 (417)
T PRK13342 39 SMILWGPPGTGKTTLARIIAGAT 61 (417)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59988969998999999999986
No 165
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00092 Score=44.91 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=35.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.|+.||||||+++.+.+.++|..--|++..
T Consensus 26 sl~I~~Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~I~~~G 67 (285)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG 67 (285)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789879989999999998099999999659888860899999
No 166
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.03 E-value=0.0018 Score=42.85 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=57.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 4899818888888999999830-3876767999-642131----256---787567787416666530001899998752
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~~~ll~~aL 322 (483)
.|++.||||+||||++.-|..+ .....++..| -|+.-. +|. ...-+++.... ......--..+.+..+-
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~--~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEG--EGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHHHH
T ss_conf 9999899999889999999999997699289997488757799999999997498599227--75587999999999987
Q ss_pred HCCCCEEEECCC----CCHHHHHHHHHH---HCCCCEEEHHHCCCCHHHHHHHHH
Q ss_conf 059988996575----879999999998---739701020004788888999999
Q gi|254780724|r 323 RMRPERIILGEV----RGPEVLDLLQAM---NTGHDGSMGTIHANNARESFGRME 370 (483)
Q Consensus 323 R~~PD~IiVGEi----Rg~Ea~~~l~A~---~TGH~G~ltTlHa~s~~~ai~RL~ 370 (483)
..+-|.|+|.-. ++.+-..-++.+ ..-+. ++-.+.|.+..+++....
T Consensus 80 ~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~-~~LVl~a~~~~~~~~~~~ 133 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDE-VLLVVDAMTGQDAVNQAK 133 (173)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCHHHHHHHHH
T ss_conf 568998999788878799999999999986448972-157424655065899999
No 167
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00091 Score=44.94 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=48.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 9862258848998188888889999998303876767999642131256-787567787416666530001899998752
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKNCL 322 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~aL 322 (483)
.+-++.+..+.+.||.||||||+++.++.+++++.--|.+....--..+ ....+.+.....+. -...|..+-+..++
T Consensus 19 sl~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p~sG~I~i~G~~~~~~~~~~r~i~~v~Q~~~l--~~~ltv~eni~~~~ 96 (233)
T PRK10771 19 TLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLLINGVDHTTTPPSRRPVSMLFQENNL--FSHLTVAQNIGLGL 96 (233)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCC--CCCCCHHHHHHHHH
T ss_conf 8898899899999999981999999996599998559999999988799888887999057766--88990999998786
Q ss_pred H
Q ss_conf 0
Q gi|254780724|r 323 R 323 (483)
Q Consensus 323 R 323 (483)
+
T Consensus 97 ~ 97 (233)
T PRK10771 97 N 97 (233)
T ss_pred H
T ss_conf 2
No 168
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.02 E-value=0.024 Score=35.04 Aligned_cols=166 Identities=19% Similarity=0.277 Sum_probs=82.1
Q ss_pred EEECCCCCCCHHHHHHCCCCCHHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHHHC
Q ss_conf 84057654667888650699889999989862--258848998188888889999998303-876767999--6421312
Q gi|254780724|r 216 IRKFKKDKLTLDHLVSFGAVTAEGARLLQIIG--RIRCNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAELQ 290 (483)
Q Consensus 216 IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v--~~~~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~El~ 290 (483)
+........+++.++.. . +.+.+..+..+. .+...+.+.|++|||||-+|+|++.+. ..+.+++.+ +...++.
T Consensus 11 L~~~l~~~~tfdnFi~g-~-n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~~ 88 (235)
T PRK08084 11 LPLYLPDDETFASFYPG-D-NDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWFV 88 (235)
T ss_pred CCCCCCCCCCHHCCCCC-C-CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
T ss_conf 58999997663023448-8-699999999998578987699989999888999999999997079857998779866517
Q ss_pred ------CCCCCEEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHH----HHHHHCCCCEEEHHHC
Q ss_conf ------56787567787416666530--00189999875205998899657587999999----9998739701020004
Q gi|254780724|r 291 ------LQQPHVVRLETRPPNIEGEG--EITMRDLVKNCLRMRPERIILGEVRGPEVLDL----LQAMNTGHDGSMGTIH 358 (483)
Q Consensus 291 ------l~~~~~v~~~~~~~~~e~~~--~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~----l~A~~TGH~G~ltTlH 358 (483)
+.+...+-+.- .....|+. +..+..++..+....--.|++.=-+-+..... +..=..+ |....+|
T Consensus 89 ~~~l~~l~~~dll~iDD-i~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~--g~~~~i~ 165 (235)
T PRK08084 89 PEVLEGMEQLSLVCIDN-IECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDW--GQIYKLQ 165 (235)
T ss_pred HHHHHHHHHCCEEEEEC-HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHC--CCEEEEC
T ss_conf 99998764189899827-45546997899999999999998489669996798824302312889999956--9727855
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 7888889999997553046799989999
Q gi|254780724|r 359 ANNARESFGRMEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 359 a~s~~~ai~RL~~m~~~~~~~~~~~~~~ 386 (483)
..+-.+-+.=|...+..-|..++.+++.
T Consensus 166 ~~dde~~~~iL~~~a~~rgl~l~~~V~~ 193 (235)
T PRK08084 166 PLSDEEKLQALQLRARLRGFELPEDVGR 193 (235)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9998999999999999739999989999
No 169
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.02 E-value=0.00084 Score=45.20 Aligned_cols=33 Identities=42% Similarity=0.410 Sum_probs=25.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCH
Q ss_conf 48998188888889999998303876767999-6421
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTA 287 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~ 287 (483)
.|-|+|+|||||||+.+.|...++. +.+| +|..
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~---~~iI~qDdy 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPN---CCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC---CEEECCCCC
T ss_conf 9899688887599999999998799---889715446
No 170
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.0019 Score=42.64 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=49.4
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC------CCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 8622588489981888888899999983038767679996421312567------8756778741666653000189999
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQ------PHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~------~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
+-++.+-.+.|.|+.||||||++++++....|+.--|++.+..=..+.. ...+++..+.+..--....+..+.+
T Consensus 33 ~~i~~GE~l~ivGeSGsGKSTL~r~i~gl~~p~sG~I~~~g~~l~~~~~~~~~~~rr~i~~VfQ~~~~slnP~~tv~~~i 112 (266)
T PRK10419 33 LTLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIL 112 (266)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHH
T ss_conf 58889989999999997799999999669999962998899956758999999975473899739136368164899999
Q ss_pred HHHHH
Q ss_conf 87520
Q gi|254780724|r 319 KNCLR 323 (483)
Q Consensus 319 ~~aLR 323 (483)
...||
T Consensus 113 ~epl~ 117 (266)
T PRK10419 113 REPLR 117 (266)
T ss_pred HHHHH
T ss_conf 99999
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00085 Score=45.16 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCCCCCCHHHHHHCCCCCHHHH---------HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH
Q ss_conf 5765466788865069988999---------9989862258848998188888889999998303876767999642131
Q gi|254780724|r 219 FKKDKLTLDHLVSFGAVTAEGA---------RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL 289 (483)
Q Consensus 219 ~~~~~~~l~~l~~~g~~~~~~~---------~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El 289 (483)
|.+++.+-.++...+...+++. +=..+-+..+-.+.|.|+.||||||+|+.+.....|+.--|.+....=.
T Consensus 10 f~~~~~~~~~~~~~~~~~e~v~K~fG~~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I~~~G~~i~ 89 (269)
T cd03294 10 FGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA 89 (269)
T ss_pred CCCCHHHHHHHHHCCCCHHHEEEECCCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECC
T ss_conf 18998999999875998788588509927977747588899999999899848999999997599999759999999999
Q ss_pred CCC-------CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 256-------78756778741666653000189999875205
Q gi|254780724|r 290 QLQ-------QPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 290 ~l~-------~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
.++ ....+.+..+..... ...|..+-+...|+.
T Consensus 90 ~~~~~~l~~~r~~~igmVFQ~~aL~--P~ltV~eNV~~~L~~ 129 (269)
T cd03294 90 AMSRKELRELRRKKISMVFQSFALL--PHRTVLENVAFGLEV 129 (269)
T ss_pred CCCHHHHHHHHCCCEEEEEECCCCC--CCCCHHHHHHHHHHH
T ss_conf 9998999885256469996157547--678799998688885
No 172
>PRK07667 uridine kinase; Provisional
Probab=97.01 E-value=0.00096 Score=44.78 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 6225884899818888888999999830387676
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDER 279 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~r 279 (483)
--.++..|-|+|++||||||+.+.|...++....
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~ 43 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGI 43 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7598699997798978899999999999866598
No 173
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.00099 Score=44.67 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.|+.||||||+++.+...+.|+.--|.+..
T Consensus 22 sl~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I~v~G 63 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63 (274)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 779848999999999998099999999706858887299999
No 174
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=97.01 E-value=0.00049 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 884899818888888999999830
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
.-||||+|..|+|||||+|+|+..
T Consensus 4 ~fnimvvG~sGlGKTTfiNtL~~~ 27 (280)
T pfam00735 4 DFTLMVVGESGLGKTTLINTLFLT 27 (280)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 789999779999789999998578
No 175
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.001 Score=44.63 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+.-+++.||.||||||||+.+.+..+++.--+.|-+
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~p~~G~I~i~g 64 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 689747979999899988889999999688778871599999
No 176
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.00 E-value=0.0091 Score=37.95 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=16.0
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 8389717620798999999999999809812
Q gi|254780724|r 153 GKTVETGINFRDNEQLLSVCQRIVNQVGRRV 183 (483)
Q Consensus 153 G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i 183 (483)
|....|..+ .=....++.|++.-.|..+
T Consensus 119 ~~I~~TQPR---RiAA~svA~RVA~E~~~~l 146 (1295)
T PRK11131 119 GLIGHTQPR---RLAARTVANRIAEELETEL 146 (1295)
T ss_pred CEEEECCCH---HHHHHHHHHHHHHHHCCCC
T ss_conf 989977965---9999999999999819998
No 177
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.001 Score=44.55 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH-------HHCCCCCCEEEEEEECCCCCCCCCCHHHH
Q ss_conf 98622588489981888888899999983038767679996421-------31256787567787416666530001899
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA-------ELQLQQPHVVRLETRPPNIEGEGEITMRD 316 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~-------El~l~~~~~v~~~~~~~~~e~~~~~t~~~ 316 (483)
.+-+..+..+.|.|+.||||||+|+.++..++|+.--+++.... ++..-..+ +.+..+...... ..|..+
T Consensus 20 sl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~p~~G~I~~~g~~i~~~~~~~~~~~r~~-ig~vfQ~~~Lf~--~lTv~e 96 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR-MGMLFQSGALFD--SLTVFE 96 (235)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCC-EEEEECCCCCCC--CCCHHH
T ss_conf 64887998999999999729999999975999898589999999998998899997578-299704986589--996999
Q ss_pred HHHHHHHCC
Q ss_conf 998752059
Q gi|254780724|r 317 LVKNCLRMR 325 (483)
Q Consensus 317 ll~~aLR~~ 325 (483)
-+-..||+.
T Consensus 97 Nv~~~l~~~ 105 (235)
T cd03261 97 NVAFPLREH 105 (235)
T ss_pred HHHHHHHHH
T ss_conf 999999995
No 178
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.00 E-value=0.0031 Score=41.20 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=34.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+-.+.+-||.||||||+|+.+..+..++.--|.+.+
T Consensus 24 ~l~v~~Ge~~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g 65 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG 65 (353)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 869989999999999953599999999769999873999999
No 179
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.00061 Score=46.14 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=18.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 58848998188888889999998303
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i 274 (483)
..+..+|+|+|||||||+|.|++-.+
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~AL 49 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFAL 49 (908)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88837998999997889999999998
No 180
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.00 E-value=0.00044 Score=47.16 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=43.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 84899818888888999999830-3876767999-642131----256---78756778741666653000189999875
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
..|++.||||+||||++.-|..+ ...+.++..| =|+.-. +|. ..--++..... .+....-...+.++.+
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~--~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSG--TGSDPAAVAFDAVEKA 79 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHHH
T ss_conf 69999899999889999999999997799289997587768899999999986398178148--7778789999999998
Q ss_pred HHCCCCEEEECCC
Q ss_conf 2059988996575
Q gi|254780724|r 322 LRMRPERIILGEV 334 (483)
Q Consensus 322 LR~~PD~IiVGEi 334 (483)
...+-|.|+|.-.
T Consensus 80 ~~~~~D~IlIDTa 92 (196)
T pfam00448 80 KAENYDVVLVDTA 92 (196)
T ss_pred HHCCCCEEEEECC
T ss_conf 8468999999899
No 181
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00099 Score=44.70 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-+..+..+.|.||.||||||+|+.++.+..|+.--++|..
T Consensus 19 l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G 59 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING 59 (211)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89889989999999995599999999769998852999999
No 182
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.99 E-value=0.00062 Score=46.11 Aligned_cols=38 Identities=37% Similarity=0.404 Sum_probs=28.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEE
Q ss_conf 225884899818888888999999830387-67679996
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCE 284 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIE 284 (483)
++.-|+-+|.|||||||||+++.|+..... +-+++.+-
T Consensus 443 ~~d~GHtlI~G~TGsGKTtl~~fL~aq~~ky~~~~f~fD 481 (800)
T PRK13898 443 VRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFD 481 (800)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 598775699899999899999999999875488799997
No 183
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.001 Score=44.63 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=34.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+..+.+.|+.||||||+++.+...+.+..--|.+.+
T Consensus 25 s~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G~I~i~G 66 (273)
T PRK13647 25 SLVIPEGSKTAILGPNGAGKSTLLLHLNGIYTAQRGRVKVMG 66 (273)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 789889989999999997599999999669888861999999
No 184
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=96.99 E-value=0.00058 Score=46.29 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=40.1
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHCCC--CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 53578816888405765466788865069--9889999989862258848998188888889999998303
Q gi|254780724|r 206 PLALDGPTLTIRKFKKDKLTLDHLVSFGA--VTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 206 p~s~~G~~i~IRk~~~~~~~l~~l~~~g~--~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i 274 (483)
.-+..--++.+=-|.++-...+...+... .+-+ .+.|...=-.+.|||..||||||||=|...|+..+
T Consensus 107 e~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nve-lehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~L 176 (452)
T TIGR00382 107 EQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVE-LEHLEEVELSKSNILLIGPTGSGKTLLAQTLARIL 176 (452)
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 01052543241124666532430455588400023-54444433300662454688852689999999873
No 185
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.98 E-value=0.0011 Score=44.24 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=32.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 862258848998188888889999998303876767999
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
.-++.+..+.+.||.||||||+++.|....+|+.--+.+
T Consensus 22 l~i~~Ge~~aliG~sGsGKSTLl~~l~gl~~p~~G~i~~ 60 (248)
T PRK11264 22 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 60 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 798799899999999980999999997589999867999
No 186
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0017 Score=43.11 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=32.2
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 225884899818888888999999830387676799964
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+..+ .+.+.||-||||||+|+.++..++|+.--|.|..
T Consensus 23 i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g 60 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred ECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 8897-5999999982399999999759668962999999
No 187
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=96.97 E-value=0.001 Score=44.53 Aligned_cols=128 Identities=23% Similarity=0.393 Sum_probs=75.1
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCC------EEEEECCH--------HHC---------CCCCCEEE
Q ss_conf 8622588489981888888899999983038---7676------79996421--------312---------56787567
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYID---KDER------IVTCEDTA--------ELQ---------LQQPHVVR 298 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~---~~~r------ivtIED~~--------El~---------l~~~~~v~ 298 (483)
+-++++--+.|.||-||||||||+++-..+. ++.- -|++|+.- ||+ .+|-|-|.
T Consensus 23 l~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~Gdk~~~Geilidf~i~~~g~~i~~~~~~k~LR~~R~~igMIFQ~yNLi~ 102 (253)
T TIGR02315 23 LEINPGEFVAVIGPSGAGKSTLLRCINRLVEGDKPSSGEILIDFSILLEGTDITKLRRGKKLRKLRRKIGMIFQHYNLIE 102 (253)
T ss_pred CEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEHHHHCCC
T ss_conf 43416517999737887267999877530268888765089888888727318767548899999764350110102378
Q ss_pred EEEECCCC---------------------CC-----------------------CCCCHHHHHHHHHHHCCCCEEEECC-
Q ss_conf 78741666---------------------65-----------------------3000189999875205998899657-
Q gi|254780724|r 299 LETRPPNI---------------------EG-----------------------EGEITMRDLVKNCLRMRPERIILGE- 333 (483)
Q Consensus 299 ~~~~~~~~---------------------e~-----------------------~~~~t~~~ll~~aLR~~PD~IiVGE- 333 (483)
-.+--.|+ +- +|+==.+=++--||=|.|+.|+.-|
T Consensus 103 R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rVGl~~~A~~RaD~LSGGQQQRVaIARAL~Q~P~lILADEP 182 (253)
T TIGR02315 103 RLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERVGLADKAYQRADQLSGGQQQRVAIARALAQQPKLILADEP 182 (253)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 30366764214321450345563258998999999876523878898652132158511689999863689958970488
Q ss_pred C--CCHHH----HHHHHHHHC--CCCEEEHHHCCCCHHHHH-HHHHHHH
Q ss_conf 5--87999----999999873--970102000478888899-9999755
Q gi|254780724|r 334 V--RGPEV----LDLLQAMNT--GHDGSMGTIHANNARESF-GRMEAMI 373 (483)
Q Consensus 334 i--Rg~Ea----~~~l~A~~T--GH~G~ltTlHa~s~~~ai-~RL~~m~ 373 (483)
| =|+.+ ++.|+-.|- |=. ++.+||-=+-+-.+ +|++.|-
T Consensus 183 iASLDP~~s~~VMd~lk~In~e~GIT-~i~NLH~VdlA~~Y~dRivGL~ 230 (253)
T TIGR02315 183 IASLDPKTSKQVMDYLKRINKEDGIT-VIVNLHQVDLAKKYADRIVGLK 230 (253)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECCCHHHHHHHHHHHHHHH
T ss_conf 43367567899999999988776977-9997461787887633776666
No 188
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.97 E-value=0.00079 Score=45.36 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=24.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEE
Q ss_conf 489981888888899999983038767-67999
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDE-RIVTC 283 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~-rivtI 283 (483)
.|.|+||.||||||+.+.|...+.... ..++|
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vi 33 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVI 33 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 989989897789999999999984648853999
No 189
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.97 E-value=0.0077 Score=38.48 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHH
Q ss_conf 998986225884899818888888999999830387676799964213
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAE 288 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~E 288 (483)
.=+...+..+--|.|.||-|+||||||+.|+..+.+..-.|.+-.+..
T Consensus 339 ~~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ 386 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVK 386 (530)
T ss_pred CCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEE
T ss_conf 372677658988999899987789999998521356772599579678
No 190
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.97 E-value=0.00067 Score=45.85 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9862258848998188888889999998303876
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
..-++.+..+.|.||.||||||||++++..++++
T Consensus 27 s~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~~~ 60 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG 60 (226)
T ss_pred EEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 7899188099999899960999999996789789
No 191
>PRK05642 DNA replication initiation factor; Validated
Probab=96.97 E-value=0.034 Score=33.94 Aligned_cols=162 Identities=18% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE--ECCHHHC-
Q ss_conf 7654667888650699889999989862258-----848998188888889999998303-876767999--6421312-
Q gi|254780724|r 220 KKDKLTLDHLVSFGAVTAEGARLLQIIGRIR-----CNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC--EDTAELQ- 290 (483)
Q Consensus 220 ~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~-----~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI--ED~~El~- 290 (483)
.....+++.++. | .+.....++..+.... ..+.+.|++|||||-+|+|++... ..+.+.+.+ ++..+..
T Consensus 12 l~~~~tfdnFi~-g-~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~~ 89 (234)
T PRK05642 12 LRDDATFANYYP-G-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGP 89 (234)
T ss_pred CCCCCCHHCCCC-C-CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 999777303571-8-75999999999876067877883899889999889999999999980799679978999875449
Q ss_pred -----CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHH-H---HHHHHCCCCEEEHHHCC
Q ss_conf -----5678756778741666653--00018999987520599889965758799999-9---99987397010200047
Q gi|254780724|r 291 -----LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPERIILGEVRGPEVLD-L---LQAMNTGHDGSMGTIHA 359 (483)
Q Consensus 291 -----l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~-~---l~A~~TGH~G~ltTlHa 359 (483)
+.+...+-..= ....-|+ -+..+..++ +.++.....+++.--+-+.... . ++.-..+ |....++.
T Consensus 90 ~~~~~l~~~d~l~IDD-i~~i~g~~~~e~~lF~l~-N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~--~~~~~i~~ 165 (234)
T PRK05642 90 ELLDNLEQYELVCIDD-LDVIAGKADWEEALFHLF-NRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTL--ALVFQMRG 165 (234)
T ss_pred HHHHHHHHCCEEEEEC-HHHHCCCHHHHHHHHHHH-HHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHC--CCEEEECC
T ss_conf 9986242279898936-455468859999999999-9999839959995787955523001679999957--81275148
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8888899999975530467999899999
Q gi|254780724|r 360 NNARESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 360 ~s~~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
.+-.+-+.=|...+..-|..+|.+++..
T Consensus 166 l~d~~~~~iL~~~a~~rgi~l~~~v~~y 193 (234)
T PRK05642 166 LSDEDKLRALQLRASRRGLHLTDEVGHF 193 (234)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9989999999999775468999899999
No 192
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.001 Score=44.65 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=35.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.+.||.||||||+++.++..++|..--|.+..
T Consensus 24 s~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~I~i~G 65 (277)
T PRK13652 24 NFIAGRKQRIAVIGPNGAGKSTLFKHFNGILKPTSGSVLIRG 65 (277)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 879989989999999994799999999669999846999999
No 193
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0011 Score=44.31 Aligned_cols=42 Identities=26% Similarity=0.185 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.|.||.||||||+++.+....+|+.--|.+..
T Consensus 29 s~~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g 70 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70 (233)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 899889989999999994099999999669999863999999
No 194
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0012 Score=44.20 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=35.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.+.|+.||||||+++.|+...+|..--|++..
T Consensus 31 sl~i~~Ge~~~liG~NGaGKSTLl~~l~gl~~p~~G~I~~~g 72 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 (265)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 889879989999999998099999999568899873899997
No 195
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.96 E-value=0.0012 Score=44.11 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+-.+.+.||-||||||+++.++..++++.--|++..
T Consensus 20 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~G 61 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 899889989999999998599999999779889960999999
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0011 Score=44.39 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-+..+..+.|.|+.||||||+++.+.+.++|..--+.+-+
T Consensus 32 l~i~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~~~ 72 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGD 72 (289)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 89889989999999995799999999659889998599999
No 197
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.0021 Score=42.42 Aligned_cols=46 Identities=35% Similarity=0.360 Sum_probs=31.5
Q ss_pred HHHHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEE
Q ss_conf 9999989862-25884899818888888999999830387676-7999
Q gi|254780724|r 238 EGARLLQIIG-RIRCNVLISGGTGSGKTTLLNCLTRYIDKDER-IVTC 283 (483)
Q Consensus 238 ~~~~~l~~~v-~~~~nilVsG~TGSGKTT~L~al~~~i~~~~r-ivtI 283 (483)
++++-+..+- .....|-|.|++|||||||.+.|...+...-+ ++.+
T Consensus 13 ~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v 60 (227)
T PRK06696 13 EIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRA 60 (227)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999835999868999778998787999999999997469948997
No 198
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.95 E-value=0.0032 Score=41.16 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8622588489981888888899999983038767679996
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
.-++.+..+.+.||-||||||+|+.|++.+.|+.--+.+.
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G~i~i~ 65 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL 65 (293)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9982895999989999989999999967977886499995
No 199
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.95 E-value=0.0056 Score=39.41 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=55.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC------CCEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 98622588489981888888899999983038767679996421312567------875677874166665300018999
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQ------PHVVRLETRPPNIEGEGEITMRDL 317 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~------~~~v~~~~~~~~~e~~~~~t~~~l 317 (483)
..-++.+-.+-+.|+.||||||+.+.++...+|..-.++..... +.+.. ...+++....+..-=....|..+.
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCC-CCCCCCHHHHHHHHEEEEEECCCCCCCCCCCHHHH
T ss_conf 45763887899988999998999999948778888449992765-56552314552420379996762336700069999
Q ss_pred HHHHHHCCCCE
Q ss_conf 98752059988
Q gi|254780724|r 318 VKNCLRMRPER 328 (483)
Q Consensus 318 l~~aLR~~PD~ 328 (483)
+...|+.....
T Consensus 390 i~epL~~~~~~ 400 (539)
T COG1123 390 LAEPLRIHGGG 400 (539)
T ss_pred HHHHHHHCCCC
T ss_conf 87478650665
No 200
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.95 E-value=0.001 Score=44.53 Aligned_cols=95 Identities=24% Similarity=0.394 Sum_probs=61.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE-E-CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 258848998188888889999998303876767999642131256787567787-4-16666530001899998752059
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET-R-PPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~-~-~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
++-+++|++||||.|||.+.++|..++ ...++.+ |..||+-.| .+.-.. . |..+ +++-.-.|-.++|.+
T Consensus 486 rPigsFlf~GPTGVGKTElak~LA~~L--~~~lir~-DMSEy~e~h--svsrLiGaPPGYV----Gy~eGG~Lte~Vr~~ 556 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL--GIELLRF-DMSEYMERH--TVSRLIGAPPGYV----GFDQGGLLTDAVIKH 556 (758)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH--HHHHHCC-CHHHHCCHH--HHHHHCCCCCCCC----CCCCCCCCCHHHHHC
T ss_conf 970589997899877799999999998--6677214-266531201--4777448998666----767777012878739
Q ss_pred CC-EEEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf 98-89965758--7999999-999873970
Q gi|254780724|r 326 PE-RIILGEVR--GPEVLDL-LQAMNTGHD 351 (483)
Q Consensus 326 PD-~IiVGEiR--g~Ea~~~-l~A~~TGH~ 351 (483)
|- +|+..|+- .++.+.+ +|.+-.|..
T Consensus 557 PysVvL~DEIEKAhpdV~nilLQvlD~G~L 586 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTL 586 (758)
T ss_pred CCEEEEEHHHHHHCHHHHHHHHHHCCCCCC
T ss_conf 877997336756398999988732377830
No 201
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.95 E-value=0.0011 Score=44.34 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=35.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+-.+.+.||.||||||+++.++...+|+.--+++.+
T Consensus 21 sl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I~~~g 62 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 (211)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 788849979999889999899999999646779888778999
No 202
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.95 E-value=0.0012 Score=44.11 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.+.|+.||||||+++.+...++|+.--|.+..
T Consensus 28 s~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p~~G~I~~~G 69 (269)
T PRK11831 28 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG 69 (269)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 668879989999939997599999999679888986699999
No 203
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0078 Score=38.42 Aligned_cols=23 Identities=17% Similarity=-0.048 Sum_probs=9.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22247976899999999999885
Q gi|254780724|r 50 NFVNRTPHYYEVKSTIFTTLIEM 72 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~i~~~l~~~ 72 (483)
-..+|.-....+..++.+.+.+.
T Consensus 99 ~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 99 CTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 65843899999999999983898
No 204
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.94 E-value=0.0011 Score=44.41 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=34.8
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-++.+-.+.|.|+.||||||+|+.++...+|+.--|++..
T Consensus 31 l~i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G 71 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG 71 (228)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89999989999999985899999999669999967999999
No 205
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0013 Score=43.93 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=34.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||-||||||++++++..++|..--|.+.+
T Consensus 22 sl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~sG~I~i~g 63 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD 63 (255)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 889989979999999998199999999759888864899999
No 206
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.93 E-value=0.03 Score=34.36 Aligned_cols=63 Identities=29% Similarity=0.405 Sum_probs=45.2
Q ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHCCCC---CEEEECCCCCCHHHHHHHHHHHC---CCCCCEEEEE
Q ss_conf 546678886506998899999898622588---48998188888889999998303---8767679996
Q gi|254780724|r 222 DKLTLDHLVSFGAVTAEGARLLQIIGRIRC---NVLISGGTGSGKTTLLNCLTRYI---DKDERIVTCE 284 (483)
Q Consensus 222 ~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~---nilVsG~TGSGKTT~L~al~~~i---~~~~rivtIE 284 (483)
..+|.+.++....-.-..+.-+..+-.++. -+.|.|++|.|||-||+|+.+++ .|+.|++.+-
T Consensus 114 ~~yTFdnFVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~t 182 (447)
T PRK00149 114 PKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVS 182 (447)
T ss_pred CCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 556032622269859999999999837676778558977998878899999999999858997289954
No 207
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.93 E-value=0.0013 Score=43.95 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=24.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 48998188888889999998303876767999
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
.|.|+|++||||||+.+.|...++. ..+.+|
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~-~~v~~i 31 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-PKVVII 31 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-CCEEEE
T ss_conf 9898899988599999999998099-985899
No 208
>KOG0054 consensus
Probab=96.92 E-value=0.0039 Score=40.55 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=93.0
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCC---CCHHHHHHH
Q ss_conf 89862258848998188888889999998303876767999642131256787567787416666530---001899998
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEG---EITMRDLVK 319 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~---~~t~~~ll~ 319 (483)
+..-++.+..+.|+|++|||||++|.|+++.++...--+.+--..-|-. |.-|++.-|-..|.-... .--+.+.++
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~-Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~ 618 (1381)
T KOG0054 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVP-QQPWIQNGTVRENILFGSPYDEERYDKVIK 618 (1381)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEC-CCCHHHCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf 1589628988999899988889999999658755675599847489866-655641785667500687035999999999
Q ss_pred HH-H----H--CCCCEEEECC----CCCH-HHH-HHHHHHHCCCCE-----EEHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 75-2----0--5998899657----5879-999-999998739701-----02000478888899999975530467999
Q gi|254780724|r 320 NC-L----R--MRPERIILGE----VRGP-EVL-DLLQAMNTGHDG-----SMGTIHANNARESFGRMEAMIAMGGFTLP 381 (483)
Q Consensus 320 ~a-L----R--~~PD~IiVGE----iRg~-Ea~-~~l~A~~TGH~G-----~ltTlHa~s~~~ai~RL~~m~~~~~~~~~ 381 (483)
+| | . -.-|...||| +-|+ -+. .+-.|.-...+= .++-+-|......+.+.....+.+ ...=
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~-KT~I 697 (1381)
T KOG0054 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRG-KTVI 697 (1381)
T ss_pred HCCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 706776797468987535778862776769999999999865799898879632240776699999999876459-8899
Q ss_pred HHHHHHHHHHHCCEEEEEE
Q ss_conf 8999999974235889998
Q gi|254780724|r 382 SQMVREIITSSLDVIVQTQ 400 (483)
Q Consensus 382 ~~~~~~~ia~avd~iV~~~ 400 (483)
.-+=.-+.-...|.|+.++
T Consensus 698 LVTHql~~L~~ad~Iivl~ 716 (1381)
T KOG0054 698 LVTHQLQFLPHADQIIVLK 716 (1381)
T ss_pred EEECCHHHHHHCCEEEEEC
T ss_conf 9847166452288999952
No 209
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.92 E-value=0.0013 Score=43.82 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=35.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||.||||||+++++....+++.--+.+..
T Consensus 21 s~~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~~~~G~i~~~G 62 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62 (240)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789879989999999998099999999638999997487899
No 210
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.92 E-value=0.00074 Score=45.57 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=27.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCC--CCCCEEEE
Q ss_conf 22588489981888888899999983038--76767999
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYID--KDERIVTC 283 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~--~~~rivtI 283 (483)
+..-|+.+|.|||||||||+|+.|+.... ++-+++..
T Consensus 438 ~gdvGHtlI~GpTGsGKTvll~~l~~q~~ry~~~~vf~F 476 (815)
T PRK13873 438 VGDVGHTLVVGPTGAGKSVLLALMALQFRRYPGSQVFAF 476 (815)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 688764389788999899999999999864489848999
No 211
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=96.92 E-value=0.00054 Score=46.52 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=15.4
Q ss_pred CCCCCCEEEEEECCCCCCCHHHH--HHCCCCCHHHHHHHHHHH
Q ss_conf 35788168884057654667888--650699889999989862
Q gi|254780724|r 207 LALDGPTLTIRKFKKDKLTLDHL--VSFGAVTAEGARLLQIIG 247 (483)
Q Consensus 207 ~s~~G~~i~IRk~~~~~~~l~~l--~~~g~~~~~~~~~l~~~v 247 (483)
-..+|.++.|..+-.+.+.-+++ .=-|+..+.+.++.+.+=
T Consensus 881 ~~~DGVTV~IP~PlLnq~~~~~F~WLVPGlr~ek~vaLik~LP 923 (1320)
T TIGR01967 881 HSDDGVTVHIPVPLLNQLDEEDFDWLVPGLREEKVVALIKSLP 923 (1320)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7977716885554578988887401104578999999987357
No 212
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.92 E-value=0.0014 Score=43.65 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-+..+..+.+.||.||||||+++.++..++|+.-.+..+..
T Consensus 24 s~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~p~~G~I~~~~~ 66 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK 66 (251)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 7898799799999899988999999996688898608999994
No 213
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0012 Score=44.08 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||.||||||+|+.++.+.+++.--|.+.+
T Consensus 23 sl~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g 64 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE 64 (369)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 889879989999999973699999999779999954999999
No 214
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.91 E-value=0.0014 Score=43.71 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=33.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98622588489981888888899999983038767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
.+-+..+..+.|.|+.||||||+++.++...+|+.--|.+.
T Consensus 25 sl~i~~Gei~~iiG~sGsGKSTLl~~i~gl~~p~~G~I~~~ 65 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 (257)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 66887997999998999819999999965999998189999
No 215
>PRK10908 cell division protein FtsE; Provisional
Probab=96.91 E-value=0.0012 Score=44.13 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.+.|+.||||||+++.++...+|+.--|++..
T Consensus 22 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g 63 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG 63 (222)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 879969989999999980799999999659999862999999
No 216
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.91 E-value=0.0013 Score=43.82 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC----CCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 98622588489981888888899999983038767679996421312567----87567787416666530001899998
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQ----PHVVRLETRPPNIEGEGEITMRDLVK 319 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~----~~~v~~~~~~~~~e~~~~~t~~~ll~ 319 (483)
..-++.+..+.+.||-||||||+++.++.+++++.--+.+++..=-..+. ...+....+..+ --...|..+-+.
T Consensus 20 s~~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gig~v~Q~~~--lf~~lTV~Enl~ 97 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE--IFPRLTVEENLL 97 (230)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCCC--CCCCCCHHHHHH
T ss_conf 779999979999999994099999999779999954999999999999989999829599377742--576788999999
Q ss_pred HHHHCCC
Q ss_conf 7520599
Q gi|254780724|r 320 NCLRMRP 326 (483)
Q Consensus 320 ~aLR~~P 326 (483)
..++..+
T Consensus 98 ~~~~~~~ 104 (230)
T TIGR03410 98 TGLAALP 104 (230)
T ss_pred HHHHHCC
T ss_conf 9998749
No 217
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.0014 Score=43.61 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.+.|+.||||||+++.++...+++.--|++..
T Consensus 25 sl~i~~Gei~~liG~NGaGKSTLl~~i~G~~~~~~G~I~~~G 66 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66 (237)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 789869979999879997599999999679988962899999
No 218
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.90 E-value=0.0013 Score=43.76 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-+..+--+.+.||.||||||+|+.+.....|+.--+.+.+
T Consensus 23 ~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p~sG~i~i~g 62 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62 (214)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 9859989999979995399999999629898864999999
No 219
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.89 E-value=0.0013 Score=43.96 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=87.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC-------HHHC-----CCCCCEEEEE-E--------E
Q ss_conf 9862258848998188888889999998303876767999642-------1312-----5678756778-7--------4
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT-------AELQ-----LQQPHVVRLE-T--------R 302 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~-------~El~-----l~~~~~v~~~-~--------~ 302 (483)
.+-++.+..+.+.||-||||||+|+.|+.++++..--|.+... .|+. ++|....... + +
T Consensus 22 sl~I~~GEi~gLIGPNGAGKSTLLk~I~Gll~P~~G~V~l~G~~i~~~~~~elar~ia~vpQ~~~l~~~~tv~e~V~~Gr 101 (409)
T PRK09536 22 DLSVREGHLVGVVGPNGAGKTTLLRAMNGLITPTAGTVLVAGDDVHALSAAAASRQVATVPQDTSLSFEFDVRQVVEMGR 101 (409)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 88988998999999987279999999966888896399999999887998999623348433346677877999998250
Q ss_pred ---------CCCC-----C------------------CCCCCHHHHHHHHHHHCCCCEEEECCC-CC--H----HHHHHH
Q ss_conf ---------1666-----6------------------530001899998752059988996575-87--9----999999
Q gi|254780724|r 303 ---------PPNI-----E------------------GEGEITMRDLVKNCLRMRPERIILGEV-RG--P----EVLDLL 343 (483)
Q Consensus 303 ---------~~~~-----e------------------~~~~~t~~~ll~~aLR~~PD~IiVGEi-Rg--~----Ea~~~l 343 (483)
.... + =+++--.+-++-.+|=|+|+.++.-|= .+ . |.+.++
T Consensus 102 ~p~~~~~~~~~~~d~~~v~~aLe~~~l~~l~dr~~~~LSGGqrQRV~IARALaq~P~ILLLDEPTs~LDi~~q~ell~lL 181 (409)
T PRK09536 102 TPHRSRFGTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQIRTLELV 181 (409)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 23332036757899999999998749976855880028999999999999996799989995876679999999999999
Q ss_pred HHH-HCCCCEEEHHHCCCC-HHHHHHHHHHHHHHC----CCCCCHHHHH-HHHHHHCCEEEEEEECC-CCCEEEEEE
Q ss_conf 998-739701020004788-888999999755304----6799989999-99974235889998769-998789999
Q gi|254780724|r 344 QAM-NTGHDGSMGTIHANN-ARESFGRMEAMIAMG----GFTLPSQMVR-EIITSSLDVIVQTQRLR-DGSRRITNI 412 (483)
Q Consensus 344 ~A~-~TGH~G~ltTlHa~s-~~~ai~RL~~m~~~~----~~~~~~~~~~-~~ia~avd~iV~~~r~~-dG~Rrv~~I 412 (483)
+.+ ..|+. ++..+|-=+ +...-.|+.-| .. ..+-|.+.+. +.|...+++=..+...+ .|.=.|+.+
T Consensus 182 r~L~~~G~T-VI~vtHDL~lA~~~cDrVivl--~~GrIva~GtPeEVlt~e~l~~vy~~~~~v~~~p~tG~~~v~~~ 255 (409)
T PRK09536 182 RDLADDGKT-VVAAIHDLNLAARYCDELVLL--ADGRVHDAGRPASVLTPDTLRAAFDARTAVGTDPATGAPTVTPL 255 (409)
T ss_pred HHHHHCCCE-EEEEECCHHHHHHHCCEEEEE--ECCEEEEEECCHHHCCHHHHHHHHCCCCEEECCCCCCCEEEECC
T ss_conf 999858999-999956899999869999999--89989987187597598899998299645535899997524316
No 220
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.89 E-value=0.0025 Score=41.87 Aligned_cols=109 Identities=27% Similarity=0.402 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCE-EEEECCHHHCCC-CCCEEEEEEECCCCCCCC-CCHHHH
Q ss_conf 998986225884899818888888999999830-3876767-999642131256-787567787416666530-001899
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERI-VTCEDTAELQLQ-QPHVVRLETRPPNIEGEG-EITMRD 316 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~ri-vtIED~~El~l~-~~~~v~~~~~~~~~e~~~-~~t~~~ 316 (483)
.-+.+.-+...|+|+.|.||+||+.+.|||..- ..+-..+ ++.+.+-++... +.+...++-.|.-.+++. .-..++
T Consensus 30 ~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~ 109 (296)
T COG3596 30 RMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ 109 (296)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 12112036861589743777768899999970267342104668870156774126652488437885532022189999
Q ss_pred HHHHHHHCCCC---EEEECCCCCHHH-HHHH-HHHHCCC
Q ss_conf 99875205998---899657587999-9999-9987397
Q gi|254780724|r 317 LVKNCLRMRPE---RIILGEVRGPEV-LDLL-QAMNTGH 350 (483)
Q Consensus 317 ll~~aLR~~PD---~IiVGEiRg~Ea-~~~l-~A~~TGH 350 (483)
+++.-| ++-| +++=|+-|..-+ ..++ +-...||
T Consensus 110 ~~~d~l-~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~ 147 (296)
T COG3596 110 LYRDYL-PKLDLVLWLIKADDRALGTDEDFLRDVIILGL 147 (296)
T ss_pred HHHHHH-HHCCEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 999886-32247999614777001477999999998605
No 221
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.89 E-value=0.0021 Score=42.34 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=32.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEEE
Q ss_conf 9862258848998188888889999998303876--7679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtIE 284 (483)
.+-+..+-.+.+.||.||||||+|+.+..+..++ .--+.+.
T Consensus 25 sl~i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~ 67 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIA 67 (362)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 7199999899999999745999999997776777881799999
No 222
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.89 E-value=0.0015 Score=43.37 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
..-+..+..+.|.||-||||||+|++|+..++|..--|.+...
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~ 64 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64 (258)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 6886599799998998889999999986567888877999997
No 223
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0048 Score=39.90 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=55.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCC----CCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 986225884899818888888999999830387676799964213125----6787567787416666530001899998
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQL----QQPHVVRLETRPPNIEGEGEITMRDLVK 319 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l----~~~~~v~~~~~~~~~e~~~~~t~~~ll~ 319 (483)
..-+..+..+-|.|+-||||||+.++|+.+..++.--|++....=... ..-+.|++..+.+..--....+..+.+.
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 59964897899984898988899999956567888628988840576653033304506995187224684101989974
Q ss_pred HHHHC
Q ss_conf 75205
Q gi|254780724|r 320 NCLRM 324 (483)
Q Consensus 320 ~aLR~ 324 (483)
..|+.
T Consensus 107 Epl~~ 111 (252)
T COG1124 107 EPLRP 111 (252)
T ss_pred HHHCC
T ss_conf 24303
No 224
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.89 E-value=0.0028 Score=41.49 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=9.7
Q ss_pred HHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 999999869983-699999998
Q gi|254780724|r 456 FWNRAAQYGEEK-NLAEVLQSL 476 (483)
Q Consensus 456 ~~~~~~~~g~~~-~~~~~~~~~ 476 (483)
+.+.++..|++. .|.+.....
T Consensus 615 l~~~ir~~Gl~~l~w~~~~~ql 636 (812)
T PRK11664 615 LLNGIRRKGLSVLNWTEEAEQL 636 (812)
T ss_pred HHHHHHHCCHHCCCCCHHHHHH
T ss_conf 9999987283008999899999
No 225
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0014 Score=43.68 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-++.+..+.|.|+.||||||+++.|...++|+.--+.+.+.
T Consensus 27 sl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (280)
T PRK13649 27 NLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDDT 69 (280)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 6898799899999599986999999996699988608999999
No 226
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0014 Score=43.60 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-++.+..+.+.|+.||||||+++.|...++|..--|.+..
T Consensus 23 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I~v~G 63 (275)
T PRK13639 23 FKAEEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSVLIKG 63 (275)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 89989989999999996499999999739899963999999
No 227
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.0012 Score=44.10 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=34.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.||-||||||+|+.++.+++|..--|.+..
T Consensus 27 sl~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~p~~G~I~l~g 68 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG 68 (265)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 889859979999999883999999999749888852999999
No 228
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0015 Score=43.50 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=35.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.|+-||||||+++.|++.++|+.--|++..
T Consensus 21 sl~i~~Gei~~liGpNGaGKSTLlk~l~Gl~~p~~G~I~~~G 62 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62 (271)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 879838979999999998099999999668888860799999
No 229
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0014 Score=43.55 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=34.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+.-+.|.|+.||||||+++.|...++|..--|.+..
T Consensus 30 sl~i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G~I~v~G 71 (273)
T PRK13632 30 SFTINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIFG 71 (273)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 889849989999999998699999999738778887599999
No 230
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.88 E-value=0.0026 Score=41.71 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=47.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH--HHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98622588489981888888899999983038767679996421--3125678756778741666653000189999875
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA--ELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~--El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
..-++.+..+.+.|+-||||||+++.++..++|+.--++|.... .........+....... .--...|..+.+...
T Consensus 22 s~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~--~l~~~ltv~e~l~~~ 99 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFD--ALFDELTVREHLRFY 99 (220)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCC--CCCCCCCHHHHHHHH
T ss_conf 889849959999989997399999999669878899779999977658898860569992356--568788799999998
Q ss_pred HHCC
Q ss_conf 2059
Q gi|254780724|r 322 LRMR 325 (483)
Q Consensus 322 LR~~ 325 (483)
.+.+
T Consensus 100 ~~~~ 103 (220)
T cd03263 100 ARLK 103 (220)
T ss_pred HHHC
T ss_conf 9756
No 231
>PRK07429 phosphoribulokinase; Provisional
Probab=96.87 E-value=0.0014 Score=43.60 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCH
Q ss_conf 848998188888889999998303876767999-6421
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTA 287 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~ 287 (483)
-.|-|+|++||||||+.+++......+ ++.+| .|..
T Consensus 9 ~IIGIAGgSGSGKTTv~r~I~~~fg~~-~VtvI~~DdY 45 (331)
T PRK07429 9 VIIGVAGDSGCGKSTFLRRLADLFGEE-LVTVICLDDY 45 (331)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 899985788778999999999983888-7799947867
No 232
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0014 Score=43.59 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-++.+..+.|.|+.||||||+++.+...++++.--|.+..
T Consensus 25 l~i~~GE~vaivG~nGsGKSTL~~~l~Gll~p~~G~I~i~G 65 (276)
T PRK13650 25 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGSIIIDG 65 (276)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 79989989999999998799999999738898860899999
No 233
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.87 E-value=0.0028 Score=41.50 Aligned_cols=66 Identities=29% Similarity=0.531 Sum_probs=43.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf 89981888888899999983038767679996421312567875677874166665300018999987520599889965
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILG 332 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVG 332 (483)
||+.||.|+|||++.++++.....+ ++.+.-+ ++ . ...-+...-.+.+++..+-.+.|-+|++.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~--~~~v~~~-~~-------~------~~~~g~~~~~i~~~f~~a~~~~p~Il~iD 64 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP--FIEISGS-EL-------V------SKYVGESEKRLRELFEAAKKLAPCVIFID 64 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCC--CEECCCC-CC-------C------CCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9878999999999999999997898--5332420-12-------2------23345068889999999997499189831
Q ss_pred CC
Q ss_conf 75
Q gi|254780724|r 333 EV 334 (483)
Q Consensus 333 Ei 334 (483)
|+
T Consensus 65 e~ 66 (131)
T pfam00004 65 EI 66 (131)
T ss_pred HH
T ss_conf 16
No 234
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.86 E-value=0.042 Score=33.34 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=64.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCC---CCCEEEEEEEC--------------CCCCCCCCC
Q ss_conf 8848998188888889999998303876767999642131256---78756778741--------------666653000
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQ---QPHVVRLETRP--------------PNIEGEGEI 312 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~---~~~~v~~~~~~--------------~~~e~~~~~ 312 (483)
++.++++||.||||+|+.+.|+...|..-..+.--.|+..... +.+.. ..+.. ....|...=
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~-Fvs~~~F~~~i~~~~flE~~~~~g~~YG 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYH-FVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEE-EEEHHHHHHHHHCCHHHHHHHHCCCCCC
T ss_conf 977999999999999999999863964505778767279988999996369-9717999999872741788874787754
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 189999875205998899657587999999999873970102000478888899999975
Q gi|254780724|r 313 TMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 313 t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m 372 (483)
+..+-++.++++.-+.++..+..|.. -++... .....-=+...|....-.||...
T Consensus 81 t~~~~I~~~~~~g~~~ildi~~~g~~---~l~~~~--~~~~~Ifi~pps~e~L~~RL~~R 135 (184)
T smart00072 81 TSKETIRQVAEQGKHCLLDIDPQGVK---QLRKAQ--LYPIVIFIAPPSSEELERRLRGR 135 (184)
T ss_pred CHHHHHHHHHCCCCEEEEEECHHHHH---HHHHHC--CCCEEEEEECCCHHHHHHHHHCC
T ss_conf 10678999872698699996299999---999858--88079999389999999999716
No 235
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0013 Score=43.91 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+..+.|.|+.||||||+++.+...+.|..--|.+..
T Consensus 27 sl~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll~P~sG~V~i~G 68 (286)
T PRK13641 27 SFELEDGSFVALIGHTGSGKSTLMQHFNALLKPSSGKITIAG 68 (286)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 679869999999999983999999999659898854999998
No 236
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0014 Score=43.73 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+-.+.+.|+.||||||+++.++....|+.--+.+.+
T Consensus 32 s~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~ 73 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGT 73 (257)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 758879989999989988899999999658988887089898
No 237
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.85 E-value=0.0015 Score=43.51 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||.||||||+|+.++.+.+++.--|.+.+
T Consensus 22 sl~i~~GE~~~llGpSGsGKSTLlr~iaGL~~p~sG~I~~~G 63 (352)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG 63 (352)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 769999989999999984699999999769999956999999
No 238
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0016 Score=43.16 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-++.+-.+-+.||-||||||+++++...++|+.--|.+...
T Consensus 25 s~~v~~Gei~~liGpnGaGKSTL~~~i~Gl~~p~~G~I~~~G~ 67 (255)
T PRK11300 25 NLEVREQEVVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLDGQ 67 (255)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 8898999799999899964999999996798898608999999
No 239
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.85 E-value=0.0008 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 884899818888888999999830
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
.-||+|+|..|+|||||+|+|+..
T Consensus 4 ~fnimVvG~sGlGKsTfiNtLf~~ 27 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNT 27 (276)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 799999768999889999997478
No 240
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.85 E-value=0.0082 Score=38.26 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEEE
Q ss_conf 9989862258848998188888889999998-3038767679996
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLT-RYIDKDERIVTCE 284 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~-~~i~~~~rivtIE 284 (483)
.+|.--+..+..++|+|+.||||||++-.++ ...-...+++.|.
T Consensus 14 ~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYid 58 (224)
T PRK09361 14 ELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYID 58 (224)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 862699888879999899998599999999999997499099967
No 241
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0015 Score=43.43 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.|.||.||||||+|+.+....+|+.--+.+..
T Consensus 21 sl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g 62 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62 (242)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 768869989999999995699999999759999815999999
No 242
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.84 E-value=0.0071 Score=38.70 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE-ECC
Q ss_conf 8998188888889999998303-876767999-642
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYI-DKDERIVTC-EDT 286 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i-~~~~rivtI-ED~ 286 (483)
|-|+||.|+|||||+.+|..++ ....++.+| .||
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDP 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 762589978789999999999997898379999688
No 243
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0018 Score=42.93 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 862258848998188888889999998303876767999
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
+-+..+--+.|.|+.|||||||++.|...+.|+.--|.+
T Consensus 28 l~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G~V~~ 66 (304)
T PRK13651 28 TEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (304)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 798599899998799985999999996699988716999
No 244
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.84 E-value=0.00092 Score=44.89 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-C-CCCCEEEE
Q ss_conf 89862258848998188888889999998303-8-76767999
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI-D-KDERIVTC 283 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i-~-~~~rivtI 283 (483)
+..=+..=++.+|.|||||||||+|+.|+... . ++-+++..
T Consensus 481 fN~Hv~DvGHTlIiGpTGaGKTvll~fL~aQ~~rY~~~~vf~F 523 (852)
T PRK13891 481 LNLHVRDLGHTFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAF 523 (852)
T ss_pred EECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8545688664078789999889999999999744189818987
No 245
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.84 E-value=0.0026 Score=41.73 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98622588489981888888899999983038767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
.+-+.++..+-+.|+.||||+|..+-|..+.+|..--|+|-
T Consensus 405 sl~i~~G~t~AlVG~SGsGKSTii~LL~RfYdP~~G~I~i~ 445 (1467)
T PTZ00265 405 NFTLKEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445 (1467)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 38863897799866888756679999963268899869978
No 246
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.83 E-value=0.0017 Score=43.04 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-+..+..+.+.|+-||||||+|+.+++.+.|+.--+.+.+.
T Consensus 20 sl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~ 62 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62 (195)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 7787799799999999981999999996798898408999999
No 247
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.83 E-value=0.00052 Score=46.63 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=26.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH-C--CCCCCEEEE-ECCH
Q ss_conf 5884899818888888999999830-3--876767999-6421
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRY-I--DKDERIVTC-EDTA 287 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~-i--~~~~rivtI-ED~~ 287 (483)
.++.+.+.||||+||||++.-|... . ....+|..| =|++
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~Dty 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTY 235 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 6727999778887578899999999999738996799980777
No 248
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.83 E-value=0.0016 Score=43.17 Aligned_cols=37 Identities=30% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 5884899818888888999999830387676799964
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+..+.+.||.||||||+|+.|+..++|+.--+.+..
T Consensus 24 ~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g 60 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL 60 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 7989999979997699999999778788860799898
No 249
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.82 E-value=0.00097 Score=44.75 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 48998188888889999998303876
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
.|.|+|++||||||+.+.|...+...
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~ 26 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGRE 26 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 98998998571999999999996605
No 250
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0017 Score=43.13 Aligned_cols=40 Identities=30% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-+..+.-++|.|++||||||+++.|...++|..--+.+.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g 65 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 9878989999889998899999995376768898488778
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.00069 Score=45.79 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCC-CCCCEEEE-ECCHH
Q ss_conf 8489981888888899999983038-76767999-64213
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYID-KDERIVTC-EDTAE 288 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~-~~~rivtI-ED~~E 288 (483)
..|+++|+|||||||++.-|..+.. ...++..| -|++-
T Consensus 76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 1899988898988999999999998679908999838888
No 252
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0011 Score=44.40 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9862258848998188888889999998303876
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
.+-++.+..+.+.|+.||||||++++++..+|+.
T Consensus 21 sl~i~~Ge~~aliG~nGaGKSTLl~~i~G~l~~~ 54 (273)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKVLAGELTGG 54 (273)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 8899899899999999976999999995678876
No 253
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.80 E-value=0.0026 Score=41.75 Aligned_cols=130 Identities=13% Similarity=0.032 Sum_probs=64.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEE---------------EEEECCCCCCCCCCHH
Q ss_conf 8848998188888889999998303876767999642131256787567---------------7874166665300018
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVR---------------LETRPPNIEGEGEITM 314 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~---------------~~~~~~~~e~~~~~t~ 314 (483)
+..|+|+||.|+||||++++|....++.-...+=-.|+.-...+.+... ++......+ ..++.
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~e~~g~dy~fvs~eeF~~~i~~g~F~~~w~~~g~-~YG~~- 79 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGL-YYGVG- 79 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCHHHHHHHHHCCCEEEEEEECCC-CCCCC-
T ss_conf 7099998998699999999998448998899987237899999968288799999999977982999986695-66707-
Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 999987520599889965758799999999987397010200047-8888899999975530467999899999997423
Q gi|254780724|r 315 RDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHA-NNARESFGRMEAMIAMGGFTLPSQMVREIITSSL 393 (483)
Q Consensus 315 ~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa-~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~av 393 (483)
. -+...|...-|+++=|...+. .++...--. .+..++. .|+...-.||..- | .=+.+.+.+.++.|-
T Consensus 80 ~-~v~~~l~~G~dVi~~g~~~~~-----~~~~~~~~~-~~~~~~i~ps~~~L~~RL~~R----G-tEs~e~I~~RL~~A~ 147 (184)
T PRK10078 80 I-EIDLWLHAGFDVVVNGSRAHL-----PQARARYQS-ALLPVCLQVSPEILRQRLENR----G-RENASEINARLARAA 147 (184)
T ss_pred H-HHHHHHHCCCEEEEECHHHHH-----HHHHHHCCC-CEEEEEECCCHHHHHHHHHHC----C-CCCHHHHHHHHHHHC
T ss_conf 8-999999749949995179899-----999986798-589999579999999999972----9-999999999999612
No 254
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0018 Score=42.81 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-++.+-.+.+.||-||||||+++.++.+++|+.--+.+.+
T Consensus 21 ~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g 61 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 79889989999999997399999999759998970899999
No 255
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.00077 Score=45.44 Aligned_cols=38 Identities=37% Similarity=0.501 Sum_probs=25.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH-HC-CCC-CCE--EEEECCH
Q ss_conf 588489981888888899999983-03-876-767--9996421
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTR-YI-DKD-ERI--VTCEDTA 287 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~-~i-~~~-~ri--vtIED~~ 287 (483)
.++.|.+.||||+||||++.-|.. +. -.. .+| ||+ |++
T Consensus 209 ~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~-Dty 251 (412)
T PRK05703 209 QGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL-DTY 251 (412)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE-CCC
T ss_conf 6736999888887567699999999999729981799983-767
No 256
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=96.80 E-value=0.0012 Score=44.18 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=92.9
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCE----EEEEC-CHH---------------HCCCC----CC-----E
Q ss_conf 62258848998188888889999998303876767----99964-213---------------12567----87-----5
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERI----VTCED-TAE---------------LQLQQ----PH-----V 296 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ri----vtIED-~~E---------------l~l~~----~~-----~ 296 (483)
..+++-.+-|=|+-|||||||||+|+...+.+-.+ ++|-- +.| |.++. ++ .
T Consensus 54 ~a~~GeLlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~lNG~~~~~~~~~~~saYvqQ~Dlf~~~LTv~E~L~f~A~ 133 (671)
T TIGR00955 54 VAKPGELLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVLLNGRPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH 133 (671)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEEECCEECCHHHHHHHHCHHEEHHHCCCCCCHHEEEEEEEE
T ss_conf 21067068984787662689999985337478614683678758375868998540122011004885103000010122
Q ss_pred EEEEE---------------------------ECC---------CCCCCCCCHHHHHHHHHHHCCCCEEEECC-CCCHHH
Q ss_conf 67787---------------------------416---------66653000189999875205998899657-587999
Q gi|254780724|r 297 VRLET---------------------------RPP---------NIEGEGEITMRDLVKNCLRMRPERIILGE-VRGPEV 339 (483)
Q Consensus 297 v~~~~---------------------------~~~---------~~e~~~~~t~~~ll~~aLR~~PD~IiVGE-iRg~Ea 339 (483)
.+|.. +.+ .+| +..++++ .=+=.||..++..| .-|.++
T Consensus 134 lRm~~~~~~~~~k~~rV~~vl~~l~L~~ca~T~IG~pg~~KGlSGGE-rKRLafA----~E~ltdP~~LFcDEPTSGLDS 208 (671)
T TIGR00955 134 LRMKRRVTKKHEKRERVDEVLQALGLRKCADTRIGIPGRVKGLSGGE-RKRLAFA----SELLTDPIILFCDEPTSGLDS 208 (671)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEECCCH-HHHHHHH----HHHHHCCCEEEECCCCCHHHH
T ss_conf 33476676057999999999986042112113437999645520113-6789988----788718942650388953459
Q ss_pred H---HHHH----HHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEE
Q ss_conf 9---9999----98739701020004788888999999755304679998999999974235889998769998789999
Q gi|254780724|r 340 L---DLLQ----AMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNI 412 (483)
Q Consensus 340 ~---~~l~----A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I 412 (483)
+ ..+| -++.|.. +++|||=+|+. |-.-+|=|+.+. +| |-|
T Consensus 209 fmA~~Vv~~L~~LA~~G~t-iI~tIHQPSs~-------------------------lF~lFd~i~lla---~G-rvv--- 255 (671)
T TIGR00955 209 FMAYSVVQVLKGLAQKGKT-IICTIHQPSSE-------------------------LFELFDKIILLA---EG-RVV--- 255 (671)
T ss_pred HHHHHHHHHHHHHHCCCCE-EEEEEECCCHH-------------------------HHHHHCCEEEEE---CC-EEE---
T ss_conf 9999999999998508979-99983056188-------------------------985117167752---77-279---
Q ss_pred EEEEEEECCEEEEEEEEEEEEECCCCCCEEEE--EEEECCCCCHHHHHHHHH
Q ss_conf 99984149889986789875406688862879--999779989889999998
Q gi|254780724|r 413 CEIVGMEGNVIITQDLLKYEVMGEDETGKLIG--QHISTGVSRPRFWNRAAQ 462 (483)
Q Consensus 413 ~Ev~g~e~~~~~~~~if~~~~~~~~~~~~~~g--~~~~~g~~~~~~~~~~~~ 462 (483)
|.|..-..-+-|. -.| ...|+.+.+++|+=+...
T Consensus 256 -----y~G~p~~a~~FF~-----------~~Gpd~~cP~~yNPADF~~~~la 291 (671)
T TIGR00955 256 -----YLGSPDQAVPFFS-----------ELGPDFPCPENYNPADFYLQVLA 291 (671)
T ss_pred -----EECCCHHHHHHHH-----------HCCCCCCCCCCCCCHHHHHHHHH
T ss_conf -----8278103689898-----------44888789788888889999973
No 257
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0018 Score=42.82 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-+..+....+-||.||||||+|+.+....+|+.--+.+.+
T Consensus 20 ~i~~g~i~~l~GpsGaGKTTLl~~iaGl~~p~~G~I~~~g 59 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINLISGLTRPQKGRIVLNG 59 (352)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 9889989999999996299999999768999965999999
No 258
>KOG0054 consensus
Probab=96.80 E-value=0.002 Score=42.58 Aligned_cols=122 Identities=18% Similarity=0.295 Sum_probs=72.1
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC--CHHHCCCCCCEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 9998986225884899818888888999999830387676799964--21312567875677874166665300018999
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED--TAELQLQQPHVVRLETRPPNIEGEGEITMRDL 317 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED--~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~l 317 (483)
.+=+..-++++--|-|.|-|||||+|+++||...+.+.+--|.|-+ ..++.+.. .+ .+.+-. ++..+ |
T Consensus 1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d---LR--srlsII-PQdPv----L 1225 (1381)
T KOG0054 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD---LR--SRLSII-PQDPV----L 1225 (1381)
T ss_pred HCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH---HH--HCCEEE-CCCCC----E
T ss_conf 13845997499768886898998899999999614765875998686525176889---97--447166-88985----5
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 987520599889965758799999999987397010200047888889999997553046799989
Q gi|254780724|r 318 VKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQ 383 (483)
Q Consensus 318 l~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~ 383 (483)
+.-.+|.|-|= .+|--|.|.+.+++.++-.. ++. .-+. .|...+.++|.|++.-
T Consensus 1226 FsGTvR~NLDP--f~e~sD~~IW~ALe~~~Lk~--~v~----~~p~----~Ld~~v~EgG~NfSvG 1279 (1381)
T KOG0054 1226 FSGTVRFNLDP--FDEYSDDEIWEALERCQLKD--VVS----SLPG----GLDSEVSEGGENFSVG 1279 (1381)
T ss_pred ECCCCCCCCCC--CCCCCHHHHHHHHHHHCHHH--HHH----CCCC----CCCCEECCCCCCCCHH
T ss_conf 36756256697--54369899999999818199--986----1876----7885616798348777
No 259
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.79 E-value=0.0023 Score=42.16 Aligned_cols=155 Identities=16% Similarity=0.233 Sum_probs=86.5
Q ss_pred HHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCE-----EEEECCHHHCCCC--------C------CEEEE
Q ss_conf 99989862258-848998188888889999998303876767-----9996421312567--------8------75677
Q gi|254780724|r 240 ARLLQIIGRIR-CNVLISGGTGSGKTTLLNCLTRYIDKDERI-----VTCEDTAELQLQQ--------P------HVVRL 299 (483)
Q Consensus 240 ~~~l~~~v~~~-~nilVsG~TGSGKTT~L~al~~~i~~~~ri-----vtIED~~El~l~~--------~------~~v~~ 299 (483)
..++..++.++ +.+||.|+.|+||||+.++|...+|+-+++ -.+-+++++.... . ..+++
T Consensus 22 ~aLll~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~ 101 (347)
T CHL00081 22 LALLLNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIRNGEKIPTKKIKIPM 101 (347)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCE
T ss_conf 99999825788786998789987499999999985787422068876789898100242666543146667521146862
Q ss_pred EEECCC-CCC--CCCCHHHHHHHHHH---------HCCCCEEEECCCC--CHHHH-HHHHHHHCCCCE----EEHHHCCC
Q ss_conf 874166-665--30001899998752---------0599889965758--79999-999998739701----02000478
Q gi|254780724|r 300 ETRPPN-IEG--EGEITMRDLVKNCL---------RMRPERIILGEVR--GPEVL-DLLQAMNTGHDG----SMGTIHAN 360 (483)
Q Consensus 300 ~~~~~~-~e~--~~~~t~~~ll~~aL---------R~~PD~IiVGEiR--g~Ea~-~~l~A~~TGH~G----~ltTlHa~ 360 (483)
..-|-+ .|+ -|.+++...++..- +-+--++.|.||- +.... .+++||.+|..- .+|--|
T Consensus 102 v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLda~a~G~~~VEReG~S~~~-- 179 (347)
T CHL00081 102 VDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRH-- 179 (347)
T ss_pred EECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEECCCCEEECC--
T ss_conf 536888852301140009989845871156531222038858861454323799999999985580898046423305--
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 88889999997553046799989999999742358899987699
Q gi|254780724|r 361 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRD 404 (483)
Q Consensus 361 s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~d 404 (483)
..++.-+..|+ -.+..++.++..-|.+.|.+....+
T Consensus 180 -----Pa~F~liaT~N---PeEgeLrp~llDRF~l~v~v~~~~~ 215 (347)
T CHL00081 180 -----PARFVLIGSGN---PEEGELRPQLLDRFGMHAEIRTVKD 215 (347)
T ss_pred -----CCCEEEEECCC---CCCCCCCHHHHHHEEEEEECCCCCC
T ss_conf -----75006885578---6556748888826322674588789
No 260
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0018 Score=42.92 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=34.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.+.||.||||||+|+.+....+++.--|.+.+
T Consensus 24 sl~i~~Ge~~~llGpsG~GKTTllr~iaGl~~p~~G~I~~~g 65 (358)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG 65 (358)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 779889989999999863699999999769998862999999
No 261
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.79 E-value=0.0036 Score=40.81 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98622588489981888888899999983038767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
..-++.+..+-+.|+-||||||+++.++..++|+.--+.|.
T Consensus 25 s~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~i~ 65 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65 (218)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 78985982999999999849999999977977897489999
No 262
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0019 Score=42.64 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.|.|+.||||||+++.+...+.|..--|.+..
T Consensus 31 sl~i~~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~I~i~G 72 (281)
T PRK13633 31 NLEVKKGEFLVILGHNGSGKSTIAKHMNALLLPSEGKVYVDG 72 (281)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 768879989999999998499999999758878885699999
No 263
>PRK03918 chromosome segregation protein; Provisional
Probab=96.78 E-value=0.0012 Score=44.05 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=6.8
Q ss_pred HHCCEEEEEEECC
Q ss_conf 4235889998769
Q gi|254780724|r 391 SSLDVIVQTQRLR 403 (483)
Q Consensus 391 ~avd~iV~~~r~~ 403 (483)
..+|.+|.+....
T Consensus 861 ~~~d~~i~V~k~~ 873 (882)
T PRK03918 861 DAADHVIRVSLEG 873 (882)
T ss_pred HHCCCEEEEEEEC
T ss_conf 8679689999878
No 264
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.77 E-value=0.0062 Score=39.11 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHH-HHHHHHHHCCCC--CCEEEEECCHHHCC
Q ss_conf 9889999989862258848998188888889-999998303876--76799964213125
Q gi|254780724|r 235 VTAEGARLLQIIGRIRCNVLISGGTGSGKTT-LLNCLTRYIDKD--ERIVTCEDTAELQL 291 (483)
Q Consensus 235 ~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT-~L~al~~~i~~~--~rivtIED~~El~l 291 (483)
+.+.+...+..+....++++|.++||||||+ ++..++..+... .+++.+-.+.++..
T Consensus 9 ~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~ 68 (201)
T smart00487 9 LRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAE 68 (201)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
T ss_conf 998899999999838998899899996099999999999863389975999908599999
No 265
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.0043 Score=40.26 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-HCC-C-CCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 88489981888888899999983-038-7-6767999-642131----256---78756778741666653000189999
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTR-YID-K-DERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~-~i~-~-~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
++.+.+.||||.||||++.-|.. +.- . ..++..| =|++-+ +|. ..-.++++.- ...-++..++
T Consensus 176 ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv------~~~~eL~~aL 249 (404)
T PRK06995 176 GGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAV------KDAADLRLAL 249 (404)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEE------CCHHHHHHHH
T ss_conf 7558986688876375899999999998389837999768754789999999998759559995------9999999999
Q ss_pred HHHHHCCCCEEEECCC----CCHHHHH---HHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHH
Q ss_conf 8752059988996575----8799999---99998739701020004788888999999755
Q gi|254780724|r 319 KNCLRMRPERIILGEV----RGPEVLD---LLQAMNTGHDGSMGTIHANNARESFGRMEAMI 373 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEi----Rg~Ea~~---~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~ 373 (483)
.. | .+-|.|+|.-. |+..-.. ++.....-.. .+-.+-|++-.+.+..+..-+
T Consensus 250 ~~-l-~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~-~~LVLsat~~~~dl~~i~~~f 308 (404)
T PRK06995 250 AE-L-RNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQ-RLLLLNATSHGDTLNEVVQAY 308 (404)
T ss_pred HH-H-CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE-EEEEECCCCCHHHHHHHHHHH
T ss_conf 97-0-89999998099989768889999999973578852-899977989999999999984
No 266
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.005 Score=39.79 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 98622588489981888888899999983038767679996421
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA 287 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~ 287 (483)
.+-+..+--+-|.||.|+||||+||.+.++..+..--|.+....
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~ 66 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP 66 (248)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 35877997999989997889999999968787777559988821
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.77 E-value=0.0042 Score=40.27 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHH--CCCCCCEEEEE
Q ss_conf 986225884899818888888999999830--38767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRY--IDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~--i~~~~rivtIE 284 (483)
.+-++.+-.+.|.||.||||||++++++++ ..+..--|.+.
T Consensus 26 sl~i~~Gei~aiiG~nGsGKSTL~~~i~G~~~~~~~~G~I~~~ 68 (252)
T CHL00131 26 NLSINAGEIHAIMGPNGSGKSTLSKVIAGHPAYTVLEGDILFK 68 (252)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 7788799899999999999999999972787667664259987
No 268
>PRK08118 topology modulation protein; Reviewed
Probab=96.77 E-value=0.0052 Score=39.63 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=39.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 84899818888888999999830387676799964213125678756778741666653000189999875205998899
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERII 330 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~Ii 330 (483)
.-|+|.|..|||||||.+.|+....- +-+.++..+|-+..+ ....-.+...++.++. .+.+||
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~i----------p~~~LD~l~w~~~w~------~~~~~e~~~~~~~~~~-~~~WIi 64 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI----------PVHHLDALFWKPNWE------GVPKEEQRTVQNELVK-EDEWII 64 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC----------CEEECCCEEECCCCC------CCCHHHHHHHHHHHHH-CCCEEE
T ss_conf 67999889998799999999998896----------979644347668994------6888999999999983-898799
Q ss_pred EC
Q ss_conf 65
Q gi|254780724|r 331 LG 332 (483)
Q Consensus 331 VG 332 (483)
=|
T Consensus 65 dG 66 (167)
T PRK08118 65 DG 66 (167)
T ss_pred EC
T ss_conf 47
No 269
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.002 Score=42.60 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=29.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCH
Q ss_conf 848998188888889999998303876767999-6421
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTA 287 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~ 287 (483)
..|.|+|+.||||||+.+.|+..++.+ .++.| +|..
T Consensus 9 iiIgIaG~SgSGKTTv~~~l~~~~~~~-~~~~I~~D~Y 45 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE-KVVVISLDDY 45 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEECCCC
T ss_conf 999986798778899999999982867-5247652232
No 270
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0021 Score=42.35 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-++.+..+.+.||.||||||+++.+.....|+.--+.|..
T Consensus 23 l~i~~Ge~~~iiG~nGaGKSTLl~~l~gl~~p~~G~i~i~g 63 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 78879989999999997199999999658888860899999
No 271
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0066 Score=38.94 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=36.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
.+-++.+..+-+.||-||||||+++.++..++|+.--+.+...
T Consensus 20 s~~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~G~ 62 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62 (210)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 6788799599999899984999999996002668998999998
No 272
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0023 Score=42.16 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=33.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 225884899818888888999999830387676799964
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+..+..+.|.|+.||||||+++.++....+..--|.+.+
T Consensus 32 i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~~~g 70 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNN 70 (269)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 859989999999999799999999649799850999999
No 273
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.74 E-value=0.0036 Score=40.76 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 8888899999975530467999899999997
Q gi|254780724|r 360 NNARESFGRMEAMIAMGGFTLPSQMVREIIT 390 (483)
Q Consensus 360 ~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia 390 (483)
+...+....++..... ..++...+...+.
T Consensus 319 g~vy~~Y~~lc~~~~~--~~ls~~~~~~~l~ 347 (394)
T PRK00411 319 GEVYEEYKELCEELGY--EPRSHTRFYEYLN 347 (394)
T ss_pred HHHHHHHHHHHHHCCC--CCCCHHHHHHHHH
T ss_conf 9999999999997399--8887999999999
No 274
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0021 Score=42.45 Aligned_cols=41 Identities=27% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.-+..+..+.|.|+.||||||+++.+....++..-.|++..
T Consensus 28 ~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~~~G~I~~~G 68 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGIVKIDG 68 (277)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 99889989999999996899999999638998884899999
No 275
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.74 E-value=0.002 Score=42.62 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=35.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 98622588489981888888899999983038767679996421
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA 287 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~ 287 (483)
.+-++.+-.|.|.|+-||||||||+.|++.++|+.--|.+-...
T Consensus 339 sl~i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~ 382 (632)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKL 382 (632)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 33357887799988988427799998606668998779989987
No 276
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.73 E-value=0.0024 Score=41.98 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=65.0
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC----CCC----CCEEEEECCHH----H---------CCCCCCEEEEE
Q ss_conf 989862258848998188888889999998303----876----76799964213----1---------25678756778
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYI----DKD----ERIVTCEDTAE----L---------QLQQPHVVRLE 300 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i----~~~----~rivtIED~~E----l---------~l~~~~~v~~~ 300 (483)
+--..+-.++-.|||||+|+|||||..-|+..+ +.. -||..+--|.= | .+...+..--.
T Consensus 234 ~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~ 313 (753)
T TIGR01447 234 VAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDE 313 (753)
T ss_pred HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999860876899879889778999999999999898649974047886684479999999999886322342366587
Q ss_pred EECCCCCCCCCCHHHHHHHHHH---------HC---CCCEEEECCC--CCHHHH-HHHHHHHCCCC-EE-----------
Q ss_conf 7416666530001899998752---------05---9988996575--879999-99999873970-10-----------
Q gi|254780724|r 301 TRPPNIEGEGEITMRDLVKNCL---------RM---RPERIILGEV--RGPEVL-DLLQAMNTGHD-GS----------- 353 (483)
Q Consensus 301 ~~~~~~e~~~~~t~~~ll~~aL---------R~---~PD~IiVGEi--Rg~Ea~-~~l~A~~TGH~-G~----------- 353 (483)
...... .....|+..||..-- +. .-|+|||-|. =|...+ -+++|..-+-. |-
T Consensus 314 ~~~~~~-~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMVdl~lm~kL~~A~~~~~k~~KLy~~~LIllGD 392 (753)
T TIGR01447 314 DLIAAL-PSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKDKKLYADRLILLGD 392 (753)
T ss_pred HHHCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCEECC
T ss_conf 985487-2045688886166147876776777788985527870600226799999997226300132010102001226
Q ss_pred ---EHHHCCCCHHHHHHHHHH
Q ss_conf ---200047888889999997
Q gi|254780724|r 354 ---MGTIHANNARESFGRMEA 371 (483)
Q Consensus 354 ---ltTlHa~s~~~ai~RL~~ 371 (483)
|..+=+.++-..+..+..
T Consensus 393 ~nQL~sveaG~Vl~~l~~~~~ 413 (753)
T TIGR01447 393 KNQLPSVEAGAVLGDLCELAN 413 (753)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 788887543555799999975
No 277
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.73 E-value=0.0012 Score=44.08 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=43.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 48998188888889999998303876767999642131256787567787416666530001899998752059988996
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIL 331 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiV 331 (483)
.|.||||+||||||....|+..+. .+.|+--+-+||.-..--.+. +......+....-.....++-.-+..-|+|+=
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls--l~~iSaG~iRelA~~~Gldl~-E~~~aee~~eIDk~iD~~~~E~A~~~~nvvlE 78 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS--LKLISAGDIRELAEKMGLDLA-ESKYAEENPEIDKKIDRRIREIAEKEKNVVLE 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CCEECCCHHHHHHHHCCCCHH-HHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 788735896864789999998639--831202007889864298877-73443058631167537885543048966885
No 278
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.73 E-value=0.0034 Score=40.94 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=73.7
Q ss_pred HHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-------ECCHHHC-CCCC----CEEEEEEECCC-C
Q ss_conf 9989862-258848998188888889999998303876767999-------6421312-5678----75677874166-6
Q gi|254780724|r 241 RLLQIIG-RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-------EDTAELQ-LQQP----HVVRLETRPPN-I 306 (483)
Q Consensus 241 ~~l~~~v-~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-------ED~~El~-l~~~----~~v~~~~~~~~-~ 306 (483)
.++-.++ -+.+|+|+.|+.|+||||+.++|...+|+-+.+-.. ++..+.. .... ...++...+-+ .
T Consensus 19 AL~laav~p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPl~at 98 (334)
T PRK13407 19 AMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVSSTTMVERPTPVIDLPLGAT 98 (334)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997727898608997899865999999999728995110367556677421133431145553448998767899999
Q ss_pred CC--CCCCHHHHHHHHH---------HHCCCCEEEECCCC--CHHHHH-HHHHHHCCCC----EEEHHHCCCCHHHHHHH
Q ss_conf 65--3000189999875---------20599889965758--799999-9999873970----10200047888889999
Q gi|254780724|r 307 EG--EGEITMRDLVKNC---------LRMRPERIILGEVR--GPEVLD-LLQAMNTGHD----GSMGTIHANNARESFGR 368 (483)
Q Consensus 307 e~--~~~~t~~~ll~~a---------LR~~PD~IiVGEiR--g~Ea~~-~l~A~~TGH~----G~ltTlHa~s~~~ai~R 368 (483)
+. -|.++....++.. -+-+--++.+.|+- +....+ +++++.+|.. ..+|.-| ..|
T Consensus 99 edr~~G~ldie~al~~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~G~~~IeReg~s~~~-------Par 171 (334)
T PRK13407 99 EDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRH-------PAR 171 (334)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEEECCEEEEC-------CCC
T ss_conf 8664474218888626987788605434028867872053333889999998871695799977634603-------662
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 9975530467999899999997423588999876
Q gi|254780724|r 369 MEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 369 L~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
+.-...|+ -....++.++..-|++.|.+...
T Consensus 172 F~LVatmN---PeEg~Lrp~lLDRf~l~v~v~~~ 202 (334)
T PRK13407 172 FVLVGSGN---PEEGELRPQLLDRFGLSVEVRSP 202 (334)
T ss_pred CEEEEEEC---CCCCCCCHHHHHHHCEEEEECCC
T ss_conf 65898208---88777598998361006871487
No 279
>PRK05480 uridine kinase; Provisional
Probab=96.72 E-value=0.0019 Score=42.64 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 258848998188888889999998303876767999
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
+--..|.|+|+.||||||+.+.|...++.. .+.+|
T Consensus 4 k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~-~v~vi 38 (209)
T PRK05480 4 KQPIIIGIAGGSGSGKTTVASTIYEELGDE-SIAVI 38 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEE
T ss_conf 898899998999778999999999980868-75999
No 280
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.72 E-value=0.0014 Score=43.62 Aligned_cols=127 Identities=25% Similarity=0.379 Sum_probs=60.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHC----CCCCCE-------EEEECCHHHCCC---CCCEEEEEEECCCCCCCCCCH
Q ss_conf 258848998188888889999998303----876767-------999642131256---787567787416666530001
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYI----DKDERI-------VTCEDTAELQLQ---QPHVVRLETRPPNIEGEGEIT 313 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i----~~~~ri-------vtIED~~El~l~---~~~~v~~~~~~~~~e~~~~~t 313 (483)
...+.++|+|+|||||||+|.|++-.+ |...+. -+-|+..|..+. +....+ ..| ..+++
T Consensus 26 ~~~~lflI~G~nGsGKSTIlDAI~~aLYGk~~r~~~~~~~~~~~~~ge~~aeV~feF~~g~~~Yr-V~R------~~gld 98 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYR-VER------SRGLD 98 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEE-EEE------CCCCC
T ss_conf 87888999889999788999999999838882336641000244567844999999997786889-986------27998
Q ss_pred HHHHHHH----------HHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCC-CCCH
Q ss_conf 8999987----------5205998899657587999999999873970102000478888899999975530467-9998
Q gi|254780724|r 314 MRDLVKN----------CLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGF-TLPS 382 (483)
Q Consensus 314 ~~~ll~~----------aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~-~~~~ 382 (483)
+.+-.+. .| .+| +-+.-|+|++.+=-|.. . .++.+-.+ ... .||+.+....|. .++.
T Consensus 99 ~~qF~r~vlLpQG~F~~FL-~r~----~~~lSGgE~f~~slsla---l-als~~~q~-~~~--~~Le~lfidEGfgtld~ 166 (213)
T cd03279 99 YDQFTRIVLLPQGEFDRFL-ARP----VSTLSGGETFLASLSLA---L-ALSEVLQN-RGG--ARLEALFIDEGFGTLDP 166 (213)
T ss_pred HHHHHHEEEECCHHHHHHH-HCC----HHHCCHHHHHHHHHHHH---H-HHHHHHHH-HHH--HHHHHHHHHHHHHHCCH
T ss_conf 8893320175351079998-376----12105477877657899---9-99999998-516--67889988735754259
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999974235
Q gi|254780724|r 383 QMVREIITSSLD 394 (483)
Q Consensus 383 ~~~~~~ia~avd 394 (483)
+.+. .+.+++.
T Consensus 167 e~le-~~~~~l~ 177 (213)
T cd03279 167 EALE-AVATALE 177 (213)
T ss_pred HHHH-HHHHHHH
T ss_conf 9999-9999999
No 281
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.72 E-value=0.0022 Score=42.32 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=34.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.+.||.||||||+|+.++.+.+++.--|.+..
T Consensus 37 sl~I~~GE~~~llGpSGsGKSTLlr~iaGl~~p~sG~I~~~G 78 (378)
T PRK09452 37 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG 78 (378)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 779999989999989997699999999769999846999999
No 282
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.71 E-value=0.0024 Score=42.05 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-+..+-.+.+.||-||||||+++.++.+++|+.--|.+..
T Consensus 20 s~~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~I~~~g 61 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61 (232)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 679899959999999996199999999779999862999999
No 283
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0014 Score=43.69 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=31.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH-HCCCC-CCEEEEECCHHHC
Q ss_conf 588489981888888899999983-03876-7679996421312
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTR-YIDKD-ERIVTCEDTAELQ 290 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~-~i~~~-~rivtIED~~El~ 290 (483)
..+|.+|+|+|||||||||+-|+. ..... -+++.+-.-.++.
T Consensus 435 d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~ 478 (796)
T COG3451 435 DVGHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAY 478 (796)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 76974998898887899999999999874598189984897357
No 284
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.71 E-value=0.0017 Score=43.05 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=53.6
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 99898622588489981888888899999983038767679996421312567875677874166665300018999987
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
.|..+-.+.-+.+|..||.|+|||-+.+|+.....- -.+.+- +...+.+.. |.+.--.++|++.
T Consensus 176 k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~v--pF~~~s--------gsef~e~~v------Gvga~rVR~lF~~ 239 (644)
T PRK10733 176 RFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTIS--------GSDFVEMFV------GVGASRVRDMFEQ 239 (644)
T ss_pred HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC--EEEEEE--------HHHHHHEEE------ECCHHHHHHHHHH
T ss_conf 999749979985177798998778999998645598--089978--------477302225------3068999999999
Q ss_pred HHHCCCCEEEECCCC
Q ss_conf 520599889965758
Q gi|254780724|r 321 CLRMRPERIILGEVR 335 (483)
Q Consensus 321 aLR~~PD~IiVGEiR 335 (483)
|-...|-+|.+.|+-
T Consensus 240 Ar~~aP~IIFIDEiD 254 (644)
T PRK10733 240 AKKAAPCIIFIDEID 254 (644)
T ss_pred HHHCCCEEEEEECHH
T ss_conf 996699799995322
No 285
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.71 E-value=0.0054 Score=39.52 Aligned_cols=48 Identities=33% Similarity=0.439 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHC-CCC--CEEEECCCCCCHHHHHHHHHHHCC-----CCCC-EEEEE
Q ss_conf 899999898622-588--489981888888899999983038-----7676-79996
Q gi|254780724|r 237 AEGARLLQIIGR-IRC--NVLISGGTGSGKTTLLNCLTRYID-----KDER-IVTCE 284 (483)
Q Consensus 237 ~~~~~~l~~~v~-~~~--nilVsG~TGSGKTT~L~al~~~i~-----~~~r-ivtIE 284 (483)
.+++..|+-+++ +.. ||+|-|+||+|||...+.++..+. .+.+ +.|+.
T Consensus 27 ~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~ 83 (383)
T TIGR02928 27 EELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVY 83 (383)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999999887506748987258878889878899999999999986226997158999
No 286
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0032 Score=41.08 Aligned_cols=41 Identities=24% Similarity=0.206 Sum_probs=34.2
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.-++.+..+.+-||-||||||+++.++..++|+.--+.|..
T Consensus 21 ~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~G 61 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG 61 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 79889839999999987199999999769788962899999
No 287
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=96.70 E-value=0.00094 Score=44.83 Aligned_cols=139 Identities=24% Similarity=0.296 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHC-----------------CCCC
Q ss_conf 06998899999898622588489981888888899999983038767679996421312-----------------5678
Q gi|254780724|r 232 FGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQ-----------------LQQP 294 (483)
Q Consensus 232 ~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~-----------------l~~~ 294 (483)
.|..-..+..=..+-+.++=.++.+||-||||||+|.-+-..-..-+=-+.+=+ .||. ....
T Consensus 13 ~G~~rkQvL~di~L~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg-~~L~ga~~~~l~~~RR~iGyIFQ~H 91 (220)
T TIGR02982 13 EGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLG-QELKGASKKELVQVRRNIGYIFQAH 91 (220)
T ss_pred CCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC-CHHCCCCHHHHHHHHHHCCCEECCC
T ss_conf 687421001276317717647984378898468899988762565556047822-0102678889999987639144120
Q ss_pred CEEEEEEECCCCCC-------------------------------------CCCCHHHHHHHHHHHCCCCEEEECC----
Q ss_conf 75677874166665-------------------------------------3000189999875205998899657----
Q gi|254780724|r 295 HVVRLETRPPNIEG-------------------------------------EGEITMRDLVKNCLRMRPERIILGE---- 333 (483)
Q Consensus 295 ~~v~~~~~~~~~e~-------------------------------------~~~~t~~~ll~~aLR~~PD~IiVGE---- 333 (483)
|-....|-..|+.- +|+=-.+=++--||=.+|+.|+=-|
T Consensus 92 NLl~~LTA~QNVqM~~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARALv~~P~LvLADEPTAA 171 (220)
T TIGR02982 92 NLLGFLTARQNVQMALELQPNLSAQEAREKARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARALVARPKLVLADEPTAA 171 (220)
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 00100017788864898876116889999999999860601255405243678616899999997338976762577233
Q ss_pred ---CCCHHHHHHHH--HHHCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf ---58799999999--9873970102000478888899999975
Q gi|254780724|r 334 ---VRGPEVLDLLQ--AMNTGHDGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 334 ---iRg~Ea~~~l~--A~~TGH~G~ltTlHa~s~~~ai~RL~~m 372 (483)
--|.+..+++| |-.-|-. ++--.|=|=.-|.-+|+..|
T Consensus 172 LD~~SGr~VV~Lm~~lA~eqGc~-iL~VTHD~RIlDvADRI~~M 214 (220)
T TIGR02982 172 LDSKSGRDVVELMQKLAREQGCT-ILLVTHDNRILDVADRIVQM 214 (220)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCE-EEEEECCCCHHHHHHHHHHC
T ss_conf 22113389999999988771988-99983673120065444211
No 288
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=96.69 E-value=0.0016 Score=43.17 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH----CCC-CCCEEEEECC
Q ss_conf 84899818888888999999830----387-6767999642
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRY----IDK-DERIVTCEDT 286 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~----i~~-~~rivtIED~ 286 (483)
-++||+|.||||||++|++++.. ..| +-+++.| |+
T Consensus 39 pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~li-D~ 78 (202)
T pfam01580 39 PHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLI-DP 78 (202)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE-CC
T ss_conf 86899658999800999999999987379620699997-48
No 289
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.69 E-value=0.0024 Score=41.99 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEEC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 41877896789999999999885656335885883321799856991899827838971-76207989999999999998
Q gi|254780724|r 100 VKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVET-GINFRDNEQLLSVCQRIVNQ 178 (483)
Q Consensus 100 ~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~-~~~f~~~~~l~~~i~rla~~ 178 (483)
+--..++..+.+.+.+.+ .++-.-|. .-++-.-++.++. .=.++|.|-++|+.... +..-.+++.+ ++. .
T Consensus 167 EPt~~Ld~~~~~~l~~~l-~~l~~~g~-til~isH~l~~~~-~~~drv~vl~~G~iv~~~~~~~~~~~~l---~~~---~ 237 (501)
T PRK10762 167 EPTDALTDTETESLFRVI-RELKSQGR-GIVYISHRMKEIF-EICDDVTVLRDGQFIGEREVASLTEDSL---IEM---M 237 (501)
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHCCC-CEEEECCCHHHHH-HCCCCCEEECCCEEEEEECHHHCCHHHH---HHH---H
T ss_conf 875578878889999988-78774484-1477514257664-2146411312781897824453799999---887---5
Q ss_pred HCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 09812433877879823762034531553578816888405765466788865069988999998986225884899818
Q gi|254780724|r 179 VGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGG 258 (483)
Q Consensus 179 ~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~ 258 (483)
.|+++....|..+.. ...+.+.++...... + .-+.+-++.+-.+.|.|+
T Consensus 238 ~g~~~~~~~p~~~~~---------------~~~~~l~~~~ls~~~--l--------------~~vs~~v~~GEi~gi~G~ 286 (501)
T PRK10762 238 VGRKLEDQYPHLDKA---------------PGEIRLKVDNLCGPG--V--------------NDVSFTLRKGEILGVSGL 286 (501)
T ss_pred HCCCHHHHCCCCCCC---------------CCCEEEEEEECCCCC--C--------------CCEEEEECCCCEEEEECC
T ss_conf 145513307776688---------------886489986314676--5--------------634447668818996678
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 888888999999830387676799964
Q gi|254780724|r 259 TGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 259 TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.||||||+++.|+...++..--+++..
T Consensus 287 nGsGKsTL~~~l~Gl~~~~~G~v~~~G 313 (501)
T PRK10762 287 MGAGRTELMKVLYGALPRTSGYVTLDG 313 (501)
T ss_pred CCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 887688999998187677777699999
No 290
>PTZ00301 uridine kinase; Provisional
Probab=96.69 E-value=0.0022 Score=42.25 Aligned_cols=37 Identities=30% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC---CCCEEEE-ECC
Q ss_conf 884899818888888999999830387---6767999-642
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK---DERIVTC-EDT 286 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~---~~rivtI-ED~ 286 (483)
...|.|+||+||||||+.+.+...+.. ...+.++ .|.
T Consensus 3 ~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~ 43 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF 43 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 88999968876789999999999987614998079983676
No 291
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.68 E-value=0.0016 Score=43.20 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=63.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC-HHHCCCC---CCEEEEEEE-------------CCCC
Q ss_conf 9862258848998188888889999998303876767999642-1312567---875677874-------------1666
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT-AELQLQQ---PHVVRLETR-------------PPNI 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~-~El~l~~---~~~v~~~~~-------------~~~~ 306 (483)
.+-++.+-.+.+.|+.||||||+++.++..++++.--+++... .....++ ...+.+... ..+.
T Consensus 20 sl~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~ 99 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHH
T ss_conf 78985996999988899992637787669867887759999999886499999978969960207662567899099995
Q ss_pred C----CCCCCHHHHHHHHHHHCCCCEEEECCCC---CHHH----HHHHH-HHHCCCCEEEHHHCC
Q ss_conf 6----5300018999987520599889965758---7999----99999-987397010200047
Q gi|254780724|r 307 E----GEGEITMRDLVKNCLRMRPERIILGEVR---GPEV----LDLLQ-AMNTGHDGSMGTIHA 359 (483)
Q Consensus 307 e----~~~~~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea----~~~l~-A~~TGH~G~ltTlHa 359 (483)
. =+++--.+-.+-.+|=++|+.++..|-- |.++ +.+++ ....|.. ++-+.|-
T Consensus 100 ~~~~~LSGG~~Qrv~lAral~~~p~llllDEPT~gLD~~~~~~i~~~i~~l~~~g~t-vi~isHd 163 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA-VLLISSE 163 (182)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECC
T ss_conf 185579989999999999997199999986875458999999999999999978999-9999687
No 292
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.002 Score=42.55 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=40.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 9862258848998188888889999998303876767999642131256
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQ 292 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~ 292 (483)
.+-++++..+.+.|++||||||+++.|+++.++..--+++-|..=-.+.
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~ 389 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389 (559)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
T ss_conf 0675489679998899997899999984757777844888993100068
No 293
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.68 E-value=0.0024 Score=41.95 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=26.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCH
Q ss_conf 48998188888889999998303876767999-6421
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTA 287 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~ 287 (483)
.|-|+|++||||||+.+++......+. +..| .|..
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~-v~vI~~D~Y 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL-VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCC
T ss_conf 989978887869999999999858487-699965777
No 294
>PRK06217 hypothetical protein; Validated
Probab=96.68 E-value=0.006 Score=39.22 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 848998188888889999998303
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i 274 (483)
+.|+|.|..|||||||-++|....
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l 25 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEAL 25 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 679997899887899999999975
No 295
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.67 E-value=0.0017 Score=43.09 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=28.3
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8622588489981888888899999983038767
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE 278 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ 278 (483)
+-+..+-.+.|.||-||||||||+.++..++++.
T Consensus 25 l~i~~GE~~~iiGpNGaGKSTLlk~i~Gll~~d~ 58 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK 58 (262)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 8987998999998999609999999975677798
No 296
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.67 E-value=0.0093 Score=37.88 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=49.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC-CC--CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCC-CCCHHHHHHHHHHHCCC
Q ss_conf 848998188888889999998303-87--676799964213125678756778741666653-00018999987520599
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYI-DK--DERIVTCEDTAELQLQQPHVVRLETRPPNIEGE-GEITMRDLVKNCLRMRP 326 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i-~~--~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~-~~~t~~~ll~~aLR~~P 326 (483)
..++|+||-||||||+|+++.-.. -. ...+ ......-...+............-..+. .-..++.++..+.-.+|
T Consensus 22 ~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lSgg~~~~~~l~~~l~~~~~~~~ 100 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPR 100 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 689998998775799999999999986326775-2555427764023057664120005429999999999985424898
Q ss_pred CEEEECCC-CCH---HH---HHH-HHHHHCCCCEEEHHHCCCCHHH
Q ss_conf 88996575-879---99---999-9998739701020004788888
Q gi|254780724|r 327 ERIILGEV-RGP---EV---LDL-LQAMNTGHDGSMGTIHANNARE 364 (483)
Q Consensus 327 D~IiVGEi-Rg~---Ea---~~~-l~A~~TGH~G~ltTlHa~s~~~ 364 (483)
..+++.|+ +|- |. +.+ ++....|-. ++.|.|=..-.+
T Consensus 101 ~lillDE~~~Gtd~~~~~~l~~~i~~~~~~~~~-~i~tTH~~eL~~ 145 (162)
T cd03227 101 PLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ-VIVITHLPELAE 145 (162)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEECCHHHHHH
T ss_conf 489963655799988999999999999976998-999797399999
No 297
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.66 E-value=0.0027 Score=41.65 Aligned_cols=41 Identities=29% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHH--CCCCCCEEEEE
Q ss_conf 986225884899818888888999999830--38767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRY--IDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~--i~~~~rivtIE 284 (483)
.+-++++..+.|.||.||||||+++.++.. .+++.--|.+.
T Consensus 21 sl~i~~Gei~~iiG~nGaGKSTLl~~i~G~~~~~~~~G~I~~~ 63 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVTFK 63 (248)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 8898499799999999999999999983775568752359999
No 298
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0046 Score=40.00 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=32.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-++.+-.+-|.|+.||||||++++|....+++.--|.++.
T Consensus 37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I~~~G 76 (327)
T PRK11308 37 NLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG 76 (327)
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9889999999999831999999999569998863799899
No 299
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.66 E-value=0.0073 Score=38.61 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=53.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC------------CCCEEEEECCHHHCCCCCCEEEEEEECCCCCC---CCCCH
Q ss_conf 5884899818888888999999830387------------67679996421312567875677874166665---30001
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDK------------DERIVTCEDTAELQLQQPHVVRLETRPPNIEG---EGEIT 313 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~------------~~rivtIED~~El~l~~~~~v~~~~~~~~~e~---~~~~t 313 (483)
....|+|+||||||||.+.-.|...++. +..|.|---+.|..-.-+|..--...+ +.+- .-.-.
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~~~~-~e~~sv~~f~~~ 81 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDILDP-TESYSAADFQRD 81 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEEECC-CCCEEHHHHHHH
T ss_conf 9977999898865899999999998799899412688749998688999999981898124345658-875449999999
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 8999987520599889965758799999999987397
Q gi|254780724|r 314 MRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGH 350 (483)
Q Consensus 314 ~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH 350 (483)
...++...+..+---|+||- +--+++|...|-
T Consensus 82 a~~~i~~i~~~~kiPIiVGG-----TglYl~aLl~g~ 113 (304)
T PRK00091 82 ALAAIEDITARGKLPILVGG-----TGLYFKALLEGL 113 (304)
T ss_pred HHHHHHHHHHCCCCCEEECC-----CHHHHHHHHCCC
T ss_conf 99999999976998789808-----389999997187
No 300
>PRK08727 hypothetical protein; Validated
Probab=96.66 E-value=0.058 Score=32.33 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHCC-CCCCEEEE--ECCHHHC-----
Q ss_conf 654667888650699889999989862258--8489981888888899999983038-76767999--6421312-----
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQIIGRIR--CNVLISGGTGSGKTTLLNCLTRYID-KDERIVTC--EDTAELQ----- 290 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~--~nilVsG~TGSGKTT~L~al~~~i~-~~~rivtI--ED~~El~----- 290 (483)
....++++++.. -+..++. ++....+. .-+.+.|++|||||-+|.|++.... ...+...+ ++.....
T Consensus 13 ~~~~tfdnFi~~--~n~~~a~-l~~~~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~~~~~~l~ 89 (233)
T PRK08727 13 PSDQRFDSYIAA--PDGLLAQ-LQALAAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAGRLRDALE 89 (233)
T ss_pred CCCCCHHHCCCC--CHHHHHH-HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 972242120678--5599999-9987438888989998999998899999999999827997288447885320256775
Q ss_pred -CCCCCEEEEEEEC-CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH-----HHHHHHHCCCCEEEHHHCCCCHH
Q ss_conf -5678756778741-6666530001899998752059988996575879999-----99999873970102000478888
Q gi|254780724|r 291 -LQQPHVVRLETRP-PNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL-----DLLQAMNTGHDGSMGTIHANNAR 363 (483)
Q Consensus 291 -l~~~~~v~~~~~~-~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~-----~~l~A~~TGH~G~ltTlHa~s~~ 363 (483)
+.+...+.+.--. -.....-+..+.+++..+ |.+.-.+++.--.-+-.. ++--=+..| ....+|..+-.
T Consensus 90 ~le~~~ll~iDDid~i~g~~~~e~aLFhL~N~~-~~~~~~ll~ts~~~P~~l~~~l~DL~SRL~~~---~~~~l~~~dD~ 165 (233)
T PRK08727 90 ALEGRSLVALDGVDSIAGQREDEVALFDFHNRA-RAAGITLLYTARQMPDGLALVLPDLRSRLSQC---IRIGLPVLDDV 165 (233)
T ss_pred HHCCCCEEEEECCHHCCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCHHHHCCCHHHHHHHHHCC---CEEEECCCCHH
T ss_conf 310389789855011269827999999999999-86198389977989566231002199999669---22885788979
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89999997553046799989999999
Q gi|254780724|r 364 ESFGRMEAMIAMGGFTLPSQMVREII 389 (483)
Q Consensus 364 ~ai~RL~~m~~~~~~~~~~~~~~~~i 389 (483)
.-..=|...+..-|..++.+++...+
T Consensus 166 ~~~~iL~~~a~~rgl~l~~~V~~Yll 191 (233)
T PRK08727 166 ARAAVLRDRAQRRGLALDEAAIDWLL 191 (233)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999869999989999999
No 301
>KOG0952 consensus
Probab=96.65 E-value=0.0024 Score=42.05 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=26.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHH-HHH--HHCCCCCCEEEEECCHH
Q ss_conf 2258848998188888889999-998--30387676799964213
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLN-CLT--RYIDKDERIVTCEDTAE 288 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~-al~--~~i~~~~rivtIED~~E 288 (483)
.....|+++.-|||||||--.. ++. ..-+|..+++.|-+---
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~ka 984 (1230)
T KOG0952 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKA 984 (1230)
T ss_pred EECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCH
T ss_conf 504414542377667521588898888750388762799747705
No 302
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.64 E-value=0.0024 Score=41.96 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 898622588489981888888899999983038767679996
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
+.+-++.+..+.|.||-||||||+++.+....|. .--+++.
T Consensus 16 isl~v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~p~-~G~I~i~ 56 (245)
T PRK03695 16 LSGEVRAGEILHLVGPNGAGKSTLLARMAGLLSG-SGEIQFA 56 (245)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC-CCEEEEC
T ss_conf 4899959989999978994199999998466888-9659999
No 303
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.64 E-value=0.0028 Score=41.51 Aligned_cols=42 Identities=26% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-+..+-.+-+.|+-||||||+++.++..++|+.--+.+.-
T Consensus 42 sf~i~~GeivgilG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G 83 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83 (224)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 789838989999979998199999999758777877699998
No 304
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=96.64 E-value=0.0052 Score=39.68 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=25.5
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2258848998188888889999998303876
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
-..+..|-|+|++||||||+..+|...+...
T Consensus 31 ~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~ 61 (230)
T PRK09270 31 PQRRTVVGIAGPPGAGKSTLAETLWEALSQQ 61 (230)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9971899998999889999999999998623
No 305
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.64 E-value=0.0027 Score=41.67 Aligned_cols=42 Identities=24% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+-.+-+.||-||||||+++.|+..++|+.--+++..
T Consensus 41 sf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G 82 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82 (236)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 578848959999999983099999999649488715999999
No 306
>KOG0057 consensus
Probab=96.63 E-value=0.0035 Score=40.84 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=61.8
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCHHHC----------CCCCCEEEEEEECCCCC-CCCCCH
Q ss_conf 62258848998188888889999998303876767999-6421312----------56787567787416666-530001
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTAELQ----------LQQPHVVRLETRPPNIE-GEGEIT 313 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~El~----------l~~~~~v~~~~~~~~~e-~~~~~t 313 (483)
-+..+..+-|+|+.||||+|++++|+.|.+..-+|..= .|--++. .||.++....|-..|.. |...++
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas 453 (591)
T KOG0057 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSAS 453 (591)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 86489789897899987889999999974468859998733765075776522167677664300659988632898768
Q ss_pred HHHHHHHHHHCCCCEE----------EECC----CCCHHH--HHHHHHHHCCCC
Q ss_conf 8999987520599889----------9657----587999--999999873970
Q gi|254780724|r 314 MRDLVKNCLRMRPERI----------ILGE----VRGPEV--LDLLQAMNTGHD 351 (483)
Q Consensus 314 ~~~ll~~aLR~~PD~I----------iVGE----iRg~Ea--~~~l~A~~TGH~ 351 (483)
..+.++.|-|-.-+=+ .||| +-|+|- ..+..|+.---+
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 899999999728378887366630326753444256406789999999845898
No 307
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.63 E-value=0.0066 Score=38.93 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=32.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE-EC---CHHHCCCC
Q ss_conf 8998188888889999998303-876767999-64---21312567
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYI-DKDERIVTC-ED---TAELQLQQ 293 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i-~~~~rivtI-ED---~~El~l~~ 293 (483)
+-|+|.-+|||||++.++.... ....|+.|| =+ .-|+.++.
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~ 47 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDK 47 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECC
T ss_conf 3789625886789999999999707995089860898887565279
No 308
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.63 E-value=0.0024 Score=42.05 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 884899818888888999999830387
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
++.|+++||.||||+|+++.|+...|.
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 939999899988999999999976899
No 309
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0019 Score=42.78 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=31.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEEE
Q ss_conf 98622588489981888888899999983038767---679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE---RIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~---rivtIE 284 (483)
.+-++.+.-+.|.|+.||||||+++.|...+.|+. -.+.+.
T Consensus 28 sl~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~ 71 (283)
T PRK13640 28 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVD 71 (283)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 86998999999999999879999999964037888861799999
No 310
>KOG1051 consensus
Probab=96.61 E-value=0.01 Score=37.56 Aligned_cols=96 Identities=29% Similarity=0.399 Sum_probs=67.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 58848998188888889999998303876767999642131256787567787416666530001899998752059988
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPER 328 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~ 328 (483)
+-..+++.||||.|||-+..||+.+.-..+....-=|-.|++- +-.+...++ |=-+.+.-+-|..++|.+|..
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e----vskligsp~---gyvG~e~gg~LteavrrrP~s 662 (898)
T KOG1051 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE----VSKLIGSPP---GYVGKEEGGQLTEAVKRRPYS 662 (898)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHH----HHHCCCCCC---CCCCCHHHHHHHHHHHCCCCE
T ss_conf 8858999788841389999999999728864268961455555----653048995---554630577888997169965
Q ss_pred EE-ECCCC--CHHHH-HHHHHHHCCCC
Q ss_conf 99-65758--79999-99999873970
Q gi|254780724|r 329 II-LGEVR--GPEVL-DLLQAMNTGHD 351 (483)
Q Consensus 329 Ii-VGEiR--g~Ea~-~~l~A~~TGH~ 351 (483)
+| +-||- +...+ .++|++-+|+.
T Consensus 663 VvLfdeIEkAh~~v~n~llq~lD~Grl 689 (898)
T KOG1051 663 VVLFEEIEKAHPDVLNILLQLLDRGRL 689 (898)
T ss_pred EEEEECHHHCCHHHHHHHHHHHHCCCC
T ss_conf 999830222288899999999862740
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.61 E-value=0.0025 Score=41.90 Aligned_cols=46 Identities=26% Similarity=0.254 Sum_probs=37.4
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHH
Q ss_conf 8986225884899818888888999999830387676799964213
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAE 288 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~E 288 (483)
+.+.++.+-.|.|.|+-||||||||+.|++..+|+.--+++-+...
T Consensus 343 vs~~i~~Ge~iaivG~NGsGKSTLlk~l~G~~~p~~G~i~~g~~v~ 388 (556)
T PRK11819 343 LSFKLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVK 388 (556)
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 4023578824789889877588999998386568885599899665
No 312
>KOG0060 consensus
Probab=96.61 E-value=0.0017 Score=43.00 Aligned_cols=56 Identities=29% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECC--H-HHCCCCC
Q ss_conf 999989862258848998188888889999998303876767999-642--1-3125678
Q gi|254780724|r 239 GARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDT--A-ELQLQQP 294 (483)
Q Consensus 239 ~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~--~-El~l~~~ 294 (483)
+.+-|.+-+..+.|+|||||+|+|||.+|+.|.+..|...-.+|- .|. - =+.+||.
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCC
T ss_conf 632100570589759997899876368999985325167872760567887755883688
No 313
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.61 E-value=0.003 Score=41.28 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+.+.||-||||||+++.++..++|+.--+.+..
T Consensus 22 sl~v~~Gei~~liGpNGaGKSTLl~~i~Gl~~p~~G~I~~~G 63 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 789889989999989997599999999679578855999999
No 314
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=96.61 E-value=0.034 Score=33.95 Aligned_cols=154 Identities=22% Similarity=0.293 Sum_probs=77.9
Q ss_pred CCCEEEEECCEEEECCCC---CCCHHHHHHHHHHHHHH--HCCC--CCC-CCCEEEEEECCCCEEEEECCCCCCCCCEEE
Q ss_conf 991899827838971762---07989999999999998--0981--243-387787982376203453155357881688
Q gi|254780724|r 144 SNKVFIEVNGKTVETGIN---FRDNEQLLSVCQRIVNQ--VGRR--VDE-SSPICDARLLDGSRVNVIIPPLALDGPTLT 215 (483)
Q Consensus 144 ~~~I~ve~~G~~~~~~~~---f~~~~~l~~~i~rla~~--~g~~--i~~-~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~ 215 (483)
.+.|+|-++|+...++.. |..+.|- +-+++... .|.+ ... +.|.+++. +.|+...++ .| .
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~~PqHp--YTr~Ll~aeP~g~~~p~~~~~~~ll~~~---~v~v~f~i~----~g---~ 292 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFAAPQHP--YTRKLLAAEPSGDPPPLPEDAPVLLEVE---DLRVWFPIK----GG---F 292 (534)
T ss_pred HHHEEEEECCEEEECCCHHHHHHCCCCH--HHHHHHHCCCCCCCCCCCCCCCCEEEEC---CEEEEEECC----CC---C
T ss_conf 4217987555776048487786287884--8999873588899999987887158742---359987537----75---3
Q ss_pred EEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-ECCHHH----C
Q ss_conf 84057654667888650699889999989862258848998188888889999998303876767999-642131----2
Q gi|254780724|r 216 IRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-EDTAEL----Q 290 (483)
Q Consensus 216 IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-ED~~El----~ 290 (483)
+|+- ...+...+ =+.+-.+.+-.+-+.|..||||||+-.||+..+++.-+|.-- +|-.-+ .
T Consensus 293 ~~r~-~~~~~AVd-------------~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~m 358 (534)
T COG4172 293 LRRT-VDHLRAVD-------------GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEM 358 (534)
T ss_pred CCCC-CHHEEEEC-------------CCEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHH
T ss_conf 0354-20007752-------------543675389767777058898115999998524768638978811666485662
Q ss_pred CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 567875677874166665300018999987520
Q gi|254780724|r 291 LQQPHVVRLETRPPNIEGEGEITMRDLVKNCLR 323 (483)
Q Consensus 291 l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR 323 (483)
.|-.+..+.....+..--....+..+++...|+
T Consensus 359 rplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 359 RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred HHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 035552269971787778843489998642141
No 315
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.61 E-value=0.012 Score=37.00 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=28.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEE
Q ss_conf 4899818888888999999830-38767679996
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRY-IDKDERIVTCE 284 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~-i~~~~rivtIE 284 (483)
.+-|+|.-|||||||+..|+.. .....|+.||-
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IK 37 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7999946999999999999999998798499994
No 316
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.0028 Score=41.49 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..-++.+-.+-+.|+.||||||++++|+...++..--+.+..
T Consensus 283 sf~v~~GEi~gl~G~nGsGKsTL~~~l~Gl~~~~~G~I~~~G 324 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324 (510)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 578748818999768886288999998198888861899999
No 317
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.61 E-value=0.0033 Score=40.99 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=23.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC---CCCCCEEEEE
Q ss_conf 48998188888889999998303---8767679996
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYI---DKDERIVTCE 284 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i---~~~~rivtIE 284 (483)
.|-|+|++||||||+.+.|...+ +.+.++.+|.
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~ 36 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELIT 36 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 989788998779999999999860026999489997
No 318
>PRK07261 topology modulation protein; Provisional
Probab=96.60 E-value=0.0071 Score=38.69 Aligned_cols=65 Identities=26% Similarity=0.292 Sum_probs=39.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 48998188888889999998303876767999642131256787567787416666530001899998752059988996
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIL 331 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiV 331 (483)
-|+|.|..|||||||.+.|+....-. ++-+ |. + .-.++|+. ...-.+...+..++.+ +.+||=
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~ip--~~~L-D~--l-~w~p~w~~----------~~~~e~~~~~~~~~~~-~~WIiD 64 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYNCP--VLHL-DQ--L-HFSSNWQE----------RDDDDMIADISNFLLK-QDWIIE 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC--EEEE-CC--E-EECCCCEE----------CCHHHHHHHHHHHHHC-CCEEEE
T ss_conf 89998899986899999999987979--7970-22--7-88899988----------8899999999999848-987994
Q ss_pred CC
Q ss_conf 57
Q gi|254780724|r 332 GE 333 (483)
Q Consensus 332 GE 333 (483)
|-
T Consensus 65 Gn 66 (171)
T PRK07261 65 GN 66 (171)
T ss_pred CC
T ss_conf 78
No 319
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.60 E-value=0.0034 Score=40.98 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+..+.+.||-||||||+++.++.+++|+.--+++..
T Consensus 20 s~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G~i~i~G 61 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG 61 (208)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 668869819999999999999999999578378989999999
No 320
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0032 Score=41.17 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 89862258848998188888889999998303876767999642
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
..+-+.++-.+++-||.|+||||+||-+..+++|..-.+++-+-
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r 67 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67 (259)
T ss_pred CCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 55023589789997688865788999986275856664888998
No 321
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.59 E-value=0.0029 Score=41.40 Aligned_cols=79 Identities=27% Similarity=0.258 Sum_probs=45.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC-----CCCCEEEEECCH--HHCCC---CCCEEEEEEECCCCCCCCCCH
Q ss_conf 98622588489981888888899999983038-----767679996421--31256---787567787416666530001
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYID-----KDERIVTCEDTA--ELQLQ---QPHVVRLETRPPNIEGEGEIT 313 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~-----~~~rivtIED~~--El~l~---~~~~v~~~~~~~~~e~~~~~t 313 (483)
.+-++.+..+.|.||.||||||+|+.+..+++ |+.--+.+.+.. ..... ....+.+..+.++.- ..|
T Consensus 20 sl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~R~~ig~VfQ~~~lf---~~T 96 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF---PGS 96 (227)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCCHHHHHHCCEEECCCCCCC---CCC
T ss_conf 67887998999999999819999999974450268998146999999999889958788962826876477667---780
Q ss_pred HHHHHHHHHHCC
Q ss_conf 899998752059
Q gi|254780724|r 314 MRDLVKNCLRMR 325 (483)
Q Consensus 314 ~~~ll~~aLR~~ 325 (483)
..+-+...|+..
T Consensus 97 V~eNi~~~l~~~ 108 (227)
T cd03260 97 IYDNVAYGLRLH 108 (227)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999983
No 322
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0028 Score=41.55 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-+..+-.+.|.|+.||||||+|+.+.....|+.--|.+.+
T Consensus 26 l~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I~~~g 66 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG 66 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 89999999999889805899999999679999980899999
No 323
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=96.57 E-value=0.0057 Score=39.38 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 8999998986225884899818888888999999830387676
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDER 279 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~r 279 (483)
.+.+.-+....+++..|+..|.-|||||||.++++..+.....
T Consensus 2 ~~lg~~ia~~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~~~ 44 (123)
T pfam02367 2 LNLGKRLAQLLKAGDVVLLSGDLGAGKTTFVRGLAKGLGITGN 44 (123)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 8999999976899979999888778899999999998599887
No 324
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.55 E-value=0.0053 Score=39.60 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=55.5
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98986225884899818888888999999830387676799964213125678756778741666653000189999875
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
|-+.-+++.+.||..||.|+|||.+.+|++...... .+.+- ..++.-. | -|.++-.+++++..|
T Consensus 158 f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~--fi~v~-~s~l~sk---~----------vGesek~vr~lF~~A 221 (390)
T PRK03992 158 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVV-GSELVQK---F----------IGEGARLVRELFELA 221 (390)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EEEEE-HHHHHHC---C----------CCHHHHHHHHHHHHH
T ss_conf 997699999727868989997899999999874888--79966-7997524---5----------417999999999999
Q ss_pred HHCCCCEEEECCCC
Q ss_conf 20599889965758
Q gi|254780724|r 322 LRMRPERIILGEVR 335 (483)
Q Consensus 322 LR~~PD~IiVGEiR 335 (483)
-...|-+|++.|+-
T Consensus 222 r~~aP~IiFiDEiD 235 (390)
T PRK03992 222 REKAPSIIFIDEID 235 (390)
T ss_pred HHHCCCEEEHHHHH
T ss_conf 97099089714325
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.54 E-value=0.0036 Score=40.78 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.-++.+-.+-+.|+-||||||+++.|+...++..--+++..
T Consensus 269 f~v~~GEivgl~G~nGsGKsTL~~~l~Gl~~~~~G~I~~~G 309 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 99968968997789999788999998198678777799999
No 326
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=96.54 E-value=0.0035 Score=40.87 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=34.9
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 62258848998188888889999998303876767999642
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
-+-++--++|.||=||||||+|+-|....+|+.=-|-+.+.
T Consensus 22 ~l~aGe~l~v~GpNG~GKTtLLR~LAGL~~P~~G~v~~~~~ 62 (204)
T TIGR01189 22 TLNAGEALQVEGPNGIGKTTLLRILAGLLRPESGEVRLNGT 62 (204)
T ss_pred EEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 54078278986069873578999998505886655752882
No 327
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=96.54 E-value=0.07 Score=31.78 Aligned_cols=172 Identities=20% Similarity=0.290 Sum_probs=92.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCH
Q ss_conf 8168884057654667888650699889999989862--2588489981888888899999983-038767679996421
Q gi|254780724|r 211 GPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIG--RIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCEDTA 287 (483)
Q Consensus 211 G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v--~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIED~~ 287 (483)
|...-|+ ....+.+++|+....--..+.+=....+ .+--|+|.-|.-|+||+++.+|++. +.+..-|+|-|.-..
T Consensus 14 g~L~~i~--~~d~v~l~~L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~ 91 (248)
T pfam05673 14 GALEPVP--HPDPVDLDDLVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDD 91 (248)
T ss_pred CCEEEEC--CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 8877517--88989988934939999999999999980898613676768989888999999998631495699987888
Q ss_pred --HH--------CCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHCCCCEEEE--------------------CCCC
Q ss_conf --31--------256787567787416666--530001899998752059988996--------------------5758
Q gi|254780724|r 288 --EL--------QLQQPHVVRLETRPPNIE--GEGEITMRDLVKNCLRMRPERIIL--------------------GEVR 335 (483)
Q Consensus 288 --El--------~l~~~~~v~~~~~~~~~e--~~~~~t~~~ll~~aLR~~PD~IiV--------------------GEiR 335 (483)
.| ..+.... +.+..-..+ ...--.+..+|.-++-.+|+-|++ +|+.
T Consensus 92 L~~Lp~i~~~l~~~~~kFI--iF~DDLSFe~~d~~yk~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e~~~d~~~~~ei~ 169 (248)
T pfam05673 92 LGDLPDIVDLLRGRPYRFI--LFCDDLSFEEGESSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSDNEGDGEIH 169 (248)
T ss_pred HCCHHHHHHHHHCCCCCEE--EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCHHHCCCCCCCCCC
T ss_conf 7219999999964997579--99635576789736999999965764468873899984270003633323477744367
Q ss_pred CHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 7999999999873970102000478888899999975530467999899999
Q gi|254780724|r 336 GPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 336 g~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
..|+.+=- ...+--.|-.-++|..+-.+-+.=...++..-+..++.+.++.
T Consensus 170 ~~d~~eEk-lSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~~~~~~~e~l~~ 220 (248)
T pfam05673 170 PGDAVEEK-LSLSDRFGLWLGFHPFDQDEYLAIVRGYAARLGLPLDEEELRR 220 (248)
T ss_pred CCHHHHHH-HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 25577745-3489867717850799999999999999998299999899999
No 328
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=96.54 E-value=0.0029 Score=41.42 Aligned_cols=26 Identities=15% Similarity=-0.033 Sum_probs=12.9
Q ss_pred CCCEEEECCCCCH---HHHHHHHHHHCCC
Q ss_conf 9988996575879---9999999987397
Q gi|254780724|r 325 RPERIILGEVRGP---EVLDLLQAMNTGH 350 (483)
Q Consensus 325 ~PD~IiVGEiRg~---Ea~~~l~A~~TGH 350 (483)
++=+.++.|.-.. +...-.-+-..|+
T Consensus 270 ~rv~~~lDE~~~l~~l~~~~~~l~~~R~~ 298 (410)
T cd01127 270 RRLWFFIDELPSLHKLPDLVDALAEGRKF 298 (410)
T ss_pred CCEEEEEECHHCCCCCHHHHHHHHHHHHC
T ss_conf 60799988700037717799999988517
No 329
>PRK13768 GTPase; Provisional
Probab=96.53 E-value=0.0023 Score=42.13 Aligned_cols=42 Identities=31% Similarity=0.446 Sum_probs=29.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEE-ECCHHHCCC
Q ss_conf 84899818888888999999830387676-7999-642131256
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDER-IVTC-EDTAELQLQ 292 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~r-ivtI-ED~~El~l~ 292 (483)
.-++|.||.||||||+.+++..+.....| +.+| =||.--.++
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~p 46 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLP 46 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 18999899999889999999999997699759997898665899
No 330
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=96.52 E-value=0.0033 Score=41.01 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 89862258848998188888889999998303876
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
..+-++.+..+.|.|+.||||||+++++++.+++.
T Consensus 22 Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~ 56 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG 56 (254)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 07289899999999999878999999995799889
No 331
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.52 E-value=0.0076 Score=38.49 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 86225884899818888888999999830
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
+-++.+..+.|.|+.|||||||+++++..
T Consensus 16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~~ 44 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78889989999999999899999988876
No 332
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0042 Score=40.31 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=31.1
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-++.+--+.+-||-||||||+|+.+..+..|+.--|.+..
T Consensus 27 ~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g 66 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 5448868999899888889999999677788886599999
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.51 E-value=0.003 Score=41.36 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=30.3
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22588489981888888899999983038767679996
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
.+.+-.+-+.||-||||||+++.|+..+.|+.--+..+
T Consensus 23 pk~GEi~gLiGpNGaGKSTLlk~i~Gll~P~~G~i~~~ 60 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDP 60 (255)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECCC
T ss_conf 98980999989999709999999967986887547468
No 334
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0036 Score=40.79 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=33.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98622588489981888888899999983038767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
.+-++.+..+.+.||.||||||+|+.|..+.+++.--|.+.
T Consensus 39 sl~I~~GE~~~llGpsGsGKSTllr~i~Gl~~p~~G~I~i~ 79 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLD 79 (377)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 87999998999999998489999999976999986599999
No 335
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0025 Score=41.91 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=32.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEEC
Q ss_conf 98622588489981888888899999983038-7676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYID-KDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~-~~~rivtIED 285 (483)
.+-++.+-.+-|.|+.||||||++++|+...+ +..--+.++.
T Consensus 282 sf~v~~GEi~gi~G~nGsGKsTLl~~L~Gl~~~~~~G~i~~~G 324 (513)
T PRK13549 282 SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDG 324 (513)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 5788688489974798865899999983898889743999998
No 336
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.49 E-value=0.003 Score=41.35 Aligned_cols=33 Identities=39% Similarity=0.693 Sum_probs=25.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 88489981888888899999983038767679996421
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA 287 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~ 287 (483)
++..++||+.|+||||+|++|.. .-..|.|+..
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~-----~Gfatvee~~ 41 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALAR-----AGFATVEEAG 41 (183)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----CCCEEECCCH
T ss_conf 33899837999768999999997-----5863501341
No 337
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=96.48 E-value=0.0066 Score=38.95 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=32.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEEC--C--HHHCCCCC
Q ss_conf 489981888888899999983038-7676799964--2--13125678
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYID-KDERIVTCED--T--AELQLQQP 294 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~-~~~rivtIED--~--~El~l~~~ 294 (483)
-++|+|+.+|||||++..|+++.- ...+++++-| + .|+..|+.
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~~~~~d~gq~~~~~pG~ 49 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHGQGEIDKPGK 49 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
T ss_conf 799994899989999999999999879944899989999877689986
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.0037 Score=40.68 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHCCCCEEEECCCC---CHHHHHHHHHHHCCCCEE
Q ss_conf 7520599889965758---799999999987397010
Q gi|254780724|r 320 NCLRMRPERIILGEVR---GPEVLDLLQAMNTGHDGS 353 (483)
Q Consensus 320 ~aLR~~PD~IiVGEiR---g~Ea~~~l~A~~TGH~G~ 353 (483)
.+|-..|+.+|.-|=- |-++.++|+.+...-.|+
T Consensus 443 ~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~~y~Gt 479 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGA 479 (638)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 9982599889985887668889999999999848983
No 339
>KOG0055 consensus
Probab=96.46 E-value=0.021 Score=35.39 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=41.2
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--CCHHHCCC
Q ss_conf 898622588489981888888899999983038767679996--42131256
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE--DTAELQLQ 292 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE--D~~El~l~ 292 (483)
+..-+.++..+.+.|+-||||+|++.-|..+.+|..--|.|. |-.+++++
T Consensus 372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~iDG~di~~~~~~ 423 (1228)
T KOG0055 372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHCCHH
T ss_conf 5798279988999889998799999999972688786599768560122659
No 340
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=96.46 E-value=0.0043 Score=40.23 Aligned_cols=169 Identities=20% Similarity=0.293 Sum_probs=81.8
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCEEEE--EC----CHHHC-----------CCC----CC-------------------
Q ss_conf 8188888889999998303876767999--64----21312-----------567----87-------------------
Q gi|254780724|r 256 SGGTGSGKTTLLNCLTRYIDKDERIVTC--ED----TAELQ-----------LQQ----PH------------------- 295 (483)
Q Consensus 256 sG~TGSGKTT~L~al~~~i~~~~rivtI--ED----~~El~-----------l~~----~~------------------- 295 (483)
=||-||||||+|.-|++|..++.--|.. || |++.+ .|| .|
T Consensus 2 LGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vPp~~R~in~vFQsYALFPHMTv~~NvAfgLk~~k~~~~ei~~RV 81 (331)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVPPHLRSINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRV 81 (331)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 78888747999999834587775507756710121572206146057354356212277645444351788856688999
Q ss_pred -----EEEEEEE--CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH---HHH---HH-HHHHHCCCCEEEHHH-CCC
Q ss_conf -----5677874--16666530001899998752059988996575879---999---99-999873970102000-478
Q gi|254780724|r 296 -----VVRLETR--PPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGP---EVL---DL-LQAMNTGHDGSMGTI-HAN 360 (483)
Q Consensus 296 -----~v~~~~~--~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~---Ea~---~~-l~A~~TGH~G~ltTl-Ha~ 360 (483)
.|++... ....+=+|+=-.+=+|--|+=.+|+.+++.|-=++ --. .. ++.++.- .| +|++ =+.
T Consensus 82 ~e~L~~V~L~~~a~rkp~qLSGGQ~QRvAlARa~v~kPk~LLlDEpLsALD~kLR~~MQ~ELk~~~~~-LG-iT~v~VTH 159 (331)
T TIGR01187 82 KEALRLVQLEEFAKRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTLQEQ-LG-ITFVFVTH 159 (331)
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH-CC-CEEEEEEC
T ss_conf 99974213001104673104685289999999986089567711772264389899889999999872-68-28999701
Q ss_pred CHHHHHH---HHHHHHHH--CCCCCCHHHHH---------HHHHHH-CCEEEEEEECCC-----C--CEEEEEEEEEEEE
Q ss_conf 8888999---99975530--46799989999---------999742-358899987699-----9--8789999999841
Q gi|254780724|r 361 NARESFG---RMEAMIAM--GGFTLPSQMVR---------EIITSS-LDVIVQTQRLRD-----G--SRRITNICEIVGM 418 (483)
Q Consensus 361 s~~~ai~---RL~~m~~~--~~~~~~~~~~~---------~~ia~a-vd~iV~~~r~~d-----G--~Rrv~~I~Ev~g~ 418 (483)
|=.+|++ |+.-|-.- ...+ +++.|+ +.|.+. |==.+.++|..+ | .=|...|.+-...
T Consensus 160 DQ~EA~TMsDRI~~l~~Gki~Q~~-~PeeiY~~P~~~FvA~FiGe~nvf~~~~~e~~~~~~v~~~P~~~r~~~~~~~~~v 238 (331)
T TIGR01187 160 DQEEALTMSDRIAILRKGKIAQIG-TPEEIYEEPSNLFVARFIGEINVFEATVIERKEEQLVLAGPVEGRECKIYEDLPV 238 (331)
T ss_pred CHHHHHHHHCEEEEECCCEEEEEC-CCHHHHHCCCCCCCEEECCCEEEEEEEEEEECCCCEEECCCCCCEEEEEEECCCC
T ss_conf 848987540202421387588836-8468751777531000106145556788862578668428743147765321666
Q ss_pred ECC---EEEEEE
Q ss_conf 498---899867
Q gi|254780724|r 419 EGN---VIITQD 427 (483)
Q Consensus 419 e~~---~~~~~~ 427 (483)
+++ .+.++|
T Consensus 239 ~~~~~~~v~LRP 250 (331)
T TIGR01187 239 EAKQPLHVVLRP 250 (331)
T ss_pred CCCCCEEEEECC
T ss_conf 777516899838
No 341
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.0087 Score=38.09 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=66.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--CCH----HHC-----CCCC-CEEEEEEECCCC-----
Q ss_conf 98622588489981888888899999983038767679996--421----312-----5678-756778741666-----
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE--DTA----ELQ-----LQQP-HVVRLETRPPNI----- 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE--D~~----El~-----l~~~-~~v~~~~~~~~~----- 306 (483)
.+-++.+-.+-+.||-||||||+++.|+..++|+.--+.|- |.. +.. +++. +.....+-..+.
T Consensus 25 s~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~ 104 (304)
T PRK13537 25 SFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR 104 (304)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 77886995999999989729999999977956897689999998875628887355999177656889899999999999
Q ss_pred -------------------------------CCCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHHH----HHHHHHH-H
Q ss_conf -------------------------------6530001899998752059988996575-8--7999----9999998-7
Q gi|254780724|r 307 -------------------------------EGEGEITMRDLVKNCLRMRPERIILGEV-R--GPEV----LDLLQAM-N 347 (483)
Q Consensus 307 -------------------------------e~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~Ea----~~~l~A~-~ 347 (483)
+-+++.-.+-.+-.+|-.+|+.+++.|- . |+++ +.+++.. .
T Consensus 105 ~~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~al~~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~ 184 (304)
T PRK13537 105 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 184 (304)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72999999999999999977995685673667999999999999998379999999388667899999999999999996
Q ss_pred CCCCEEEHHHCC
Q ss_conf 397010200047
Q gi|254780724|r 348 TGHDGSMGTIHA 359 (483)
Q Consensus 348 TGH~G~ltTlHa 359 (483)
.|.. ++-|.|-
T Consensus 185 ~G~T-illttH~ 195 (304)
T PRK13537 185 RGKT-ILLTTHF 195 (304)
T ss_pred CCCE-EEEECCC
T ss_conf 8999-9998884
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.45 E-value=0.0045 Score=40.10 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=6.0
Q ss_pred CCEEEEECCEEEE
Q ss_conf 9189982783897
Q gi|254780724|r 145 NKVFIEVNGKTVE 157 (483)
Q Consensus 145 ~~I~ve~~G~~~~ 157 (483)
+.|++-.+|+...
T Consensus 221 dri~~l~~g~l~~ 233 (632)
T PRK11147 221 TRIVDLDRGKLVS 233 (632)
T ss_pred CCCEECCCCCEEE
T ss_conf 5000014981688
No 343
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.44 E-value=0.0044 Score=40.17 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=28.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9862258848998188888889999998303876
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
.+-++.+-.+.|.|+-||||||+++.++...|..
T Consensus 280 s~~v~~GE~~~i~G~nGsGKSTLl~~l~G~~p~~ 313 (490)
T PRK10938 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG 313 (490)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 7898389889998678887999999980889767
No 344
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.0043 Score=40.19 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98622588489981888888899999983038767679996
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
.+-++.+-.+-|.|+-||||||++++|+...+++.--+.+.
T Consensus 273 sl~v~~GEivgivG~nGsGKSTL~k~L~Gl~~p~~G~I~~~ 313 (501)
T PRK11288 273 SFAVRRGEIVGFFGLVGAGRSELMKLLYGATRRTAGQVYLD 313 (501)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 47870883999756888648799998438748876659999
No 345
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.41 E-value=0.0033 Score=41.01 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 86225884899818888888999999830387676
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDER 279 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~r 279 (483)
+-++.+..+-|.|+.||||||+++++++.++++.+
T Consensus 37 f~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~~ 71 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 71 (330)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 68889989999868987799999999768888883
No 346
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.0017 Score=43.11 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=48.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHH
Q ss_conf 9862258848998188888889999998303-876767999-642131----256---7875677874166665300018
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITM 314 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~ 314 (483)
....+.++.|++.|+|||||||++.-|..+. ..+.++..+ -|++-- +|. ....++... +....++
T Consensus 200 ~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~------~~dpa~l 273 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV------ATSPAEL 273 (407)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE------ECCHHHH
T ss_conf 0230369089998999897899999999999977991799970667788999999999997964998------1888999
Q ss_pred HHHHH-HHHHCCCCEEEECCC
Q ss_conf 99998-752059988996575
Q gi|254780724|r 315 RDLVK-NCLRMRPERIILGEV 334 (483)
Q Consensus 315 ~~ll~-~aLR~~PD~IiVGEi 334 (483)
.+.+. .+....-|+|+|.-.
T Consensus 274 ~~av~~~a~~~~~DvVIIDTA 294 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHHHHHCCCCCEEEEECC
T ss_conf 999999986289998999699
No 347
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=96.41 E-value=0.029 Score=34.44 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=59.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 4899818888888999999830387-676799964213125678756778741666653000189999875205998899
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERII 330 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~Ii 330 (483)
.|++||-.+|||||+.+.|..+... ..+++.|-| .-+.+.+ +... .+..|....-.+..+++-+| .+.+.+|
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d-~~~~~~~-~~y~----~s~~Ek~~R~~l~s~v~r~L-s~~~iVI 73 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEKGYDVIVISD-ESLGIES-DDYK----DSKKEKFLRGSLRSAVKRDL-SKNTIVI 73 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHH-CCCCEEE
T ss_conf 97985799996889999999999975993899780-0126753-1000----10478999999999998751-6688899
Q ss_pred ECCCC---CH--HHHHHHHHHHCCCCEEEHHHCCCCHHHHHH
Q ss_conf 65758---79--999999998739701020004788888999
Q gi|254780724|r 331 LGEVR---GP--EVLDLLQAMNTGHDGSMGTIHANNARESFG 367 (483)
Q Consensus 331 VGEiR---g~--Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~ 367 (483)
+.-.- |- |.+-+-+++.|+| +++|...+.+...
T Consensus 74 lD~~NYiKG~RYEL~C~Ak~~~t~~----c~v~~~~p~e~~~ 111 (266)
T pfam08433 74 VDSLNYIKGFRYELYCIAKEAKTTY----CVVYCKAPLDTCL 111 (266)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCE----EEEEECCCHHHHH
T ss_conf 5487404568999999998638884----8999689989999
No 348
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.40 E-value=0.0049 Score=39.80 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.+-++.+-.+-+.|+-||||||+++.++..++++.--|.+..
T Consensus 20 sl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~~G~I~~~G 61 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61 (236)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 899889989999989997399999999679878831899999
No 349
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.0041 Score=40.36 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=29.5
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 862258848998188888889999998303876767
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERI 280 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ri 280 (483)
+-++.+-.+-|.|+.||||||++++++..++...++
T Consensus 28 f~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~~~ 63 (327)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRV 63 (327)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 798899999999999878999999997488989976
No 350
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.39 E-value=0.005 Score=39.78 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98986225884899818888888999999830387676799964213125678756778741666653000189999875
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
+|........-++++|.||||||.+|++|-.. ..-++=.|.-.- |...+.- .......-....|..+|-..
T Consensus 119 ~l~~~~~~~~~~vl~G~TG~GKT~iL~~L~~~---G~qviDLEglAn----HRGS~FG--~~~~~~QPsQk~FEn~l~~~ 189 (311)
T TIGR03167 119 QLEELPQPFPLIVLGGMTGSGKTELLHALANA---GAQVLDLEGLAN----HRGSSFG--ALGLGPQPSQKRFENALAEA 189 (311)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC---CCCCCCHHHHHH----CCCCCCC--CCCCCCCCCHHHHHHHHHHH
T ss_conf 99714546876998788887789999999976---997425899863----1465346--88889997899999999999
Q ss_pred H-HCCCCE--EEECCCC--CHHH--HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHH
Q ss_conf 2-059988--9965758--7999--9999998739701020004788888999999755
Q gi|254780724|r 322 L-RMRPER--IILGEVR--GPEV--LDLLQAMNTGHDGSMGTIHANNARESFGRMEAMI 373 (483)
Q Consensus 322 L-R~~PD~--IiVGEiR--g~Ea--~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~ 373 (483)
| +.+|.. ++=+|-| |.-. ..++++|..|.. ++ +.+ +-..=+.+|..-+
T Consensus 190 l~~~~~~~~i~vE~ES~~IG~~~iP~~l~~~M~~a~~-i~--i~~-~le~Rv~~l~~~Y 244 (311)
T TIGR03167 190 LRRLDPGRPIFVEDESRRIGRVALPDALFEAMRAAPL-VE--LEA-SLEERVERLVEEY 244 (311)
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCE-EE--EEC-CHHHHHHHHHHHH
T ss_conf 9817888956996033130571389999999851998-99--989-9999999999986
No 351
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.0019 Score=42.67 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEE-ECCHHHCCCCCCEEEEEEECCCCCC---CCCCHHHHHHHHHH-HC
Q ss_conf 8489981888888899999983-03876767999-6421312567875677874166665---30001899998752-05
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTC-EDTAELQLQQPHVVRLETRPPNIEG---EGEITMRDLVKNCL-RM 324 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtI-ED~~El~l~~~~~v~~~~~~~~~e~---~~~~t~~~ll~~aL-R~ 324 (483)
..|-..||||.||||++.-|.. +.....++..| =|+.-+ ....+.+-..+.-++.- ...-++..++...- +.
T Consensus 242 q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRI--GAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka 319 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI--GTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH--HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf 17999899998889999999999861698089998066347--6999999999984994399688899999999876336
Q ss_pred CCCEEEECCC----CCHHHHH-H---HHHHHCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 9988996575----8799999-9---999873970102000478888899999975
Q gi|254780724|r 325 RPERIILGEV----RGPEVLD-L---LQAMNTGHDGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 325 ~PD~IiVGEi----Rg~Ea~~-~---l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m 372 (483)
+-|.|+|.-. |+.+-.. + +.....-+ +.-++-|++-...+......
T Consensus 320 ~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~e--v~LVLSATTK~~DL~eIi~r 373 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDY--ICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE--EEEEEECCCCHHHHHHHHHH
T ss_conf 8888999298988468999999999985127771--69999788998999999997
No 352
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.39 E-value=0.0099 Score=37.70 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHCCC--CCHHHHHHHHHHHCCCCCEEEECCCCCCHHH-HHHHHHHHCC-----CCCCEEEEECCHHHCCC
Q ss_conf 88865069--9889999989862258848998188888889-9999983038-----76767999642131256
Q gi|254780724|r 227 DHLVSFGA--VTAEGARLLQIIGRIRCNVLISGGTGSGKTT-LLNCLTRYID-----KDERIVTCEDTAELQLQ 292 (483)
Q Consensus 227 ~~l~~~g~--~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT-~L~al~~~i~-----~~~rivtIED~~El~l~ 292 (483)
..+.+.|. .++-+..-+-.+ ..++++++..+||||||. ++-.+++.+. ..-+.+.+--+.||..+
T Consensus 12 ~~l~~~g~~~pt~IQ~~~ip~i-l~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Q 84 (203)
T cd00268 12 RGIYALGFEKPTPIQARAIPPL-LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ 84 (203)
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf 9999879999999999999999-779988997579972228888699999861667689669999687999999
No 353
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.0048 Score=39.92 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCC-CCHH------HHHHHHHHH--CCCCEEEHHHCC
Q ss_conf 30001899998752059988996575-8799------999999987--397010200047
Q gi|254780724|r 309 EGEITMRDLVKNCLRMRPERIILGEV-RGPE------VLDLLQAMN--TGHDGSMGTIHA 359 (483)
Q Consensus 309 ~~~~t~~~ll~~aLR~~PD~IiVGEi-Rg~E------a~~~l~A~~--TGH~G~ltTlHa 359 (483)
+|+--.+=++-.+|=++|+.||..|- ++.. ...+++-.+ .|.. .+.--|=
T Consensus 465 SGGqrQRv~IAraL~~~P~lLI~DEPTs~LDv~~qa~il~Ll~~L~~~~g~t-il~IsHD 523 (623)
T PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIA-YLFISHD 523 (623)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCE-EEEECCC
T ss_conf 9999999999999996999999968866679999999999999999972989-9998689
No 354
>PRK01156 chromosome segregation protein; Provisional
Probab=96.38 E-value=0.0039 Score=40.51 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHCCEEEEEEECCCCCEEE
Q ss_conf 74235889998769998789
Q gi|254780724|r 390 TSSLDVIVQTQRLRDGSRRI 409 (483)
Q Consensus 390 a~avd~iV~~~r~~dG~Rrv 409 (483)
...+|.+|.+++..+|++-|
T Consensus 873 ~~~~d~~i~V~K~~~~S~v~ 892 (895)
T PRK01156 873 LSVADVAYEVKKSSGSSKVI 892 (895)
T ss_pred HHHCCCEEEEEEECCCCEEE
T ss_conf 98589379999988942698
No 355
>KOG0733 consensus
Probab=96.38 E-value=0.0045 Score=40.08 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=51.8
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98986225884899818888888999999830387676799964213125678756778741666653000189999875
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
|..+-+++-..+|+-||.|.|||.+.||+.+...-. =+.+..+-.| +.+-|..+-.+++++..|
T Consensus 215 ~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP----------f~~isApeiv------SGvSGESEkkiRelF~~A 278 (802)
T KOG0733 215 FSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP----------FLSISAPEIV------SGVSGESEKKIRELFDQA 278 (802)
T ss_pred HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC----------EEEECCHHHH------CCCCCCCHHHHHHHHHHH
T ss_conf 866287799751644899864789999975212885----------4851414653------155752289999999987
Q ss_pred HHCCCCEEEECCC
Q ss_conf 2059988996575
Q gi|254780724|r 322 LRMRPERIILGEV 334 (483)
Q Consensus 322 LR~~PD~IiVGEi 334 (483)
-+..|-++++.||
T Consensus 279 ~~~aPcivFiDeI 291 (802)
T KOG0733 279 KSNAPCIVFIDEI 291 (802)
T ss_pred HCCCCEEEEEECC
T ss_conf 3669759985110
No 356
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.37 E-value=0.017 Score=36.13 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 48998188888889999998303
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i 274 (483)
.|+|.|..|+||||+++.++...
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~w 24 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLW 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998279898999999999999
No 357
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.37 E-value=0.0054 Score=39.56 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=66.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC------CHHHC-----CCCCCEEE-EEEECCCC-----
Q ss_conf 986225884899818888888999999830387676799964------21312-----56787567-78741666-----
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED------TAELQ-----LQQPHVVR-LETRPPNI----- 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED------~~El~-----l~~~~~v~-~~~~~~~~----- 306 (483)
..-++.+..+-+.||-||||||+++.++..++|+.--++|.. +.++. +++.+.+. ..+-..+.
T Consensus 22 sf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~ 101 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG 101 (301)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 67885981999999999819999999967956897779992751344879998537674555656788899999999999
Q ss_pred -C------------------------------CCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHH----HHHHHHHHHC
Q ss_conf -6------------------------------530001899998752059988996575-8--799----9999999873
Q gi|254780724|r 307 -E------------------------------GEGEITMRDLVKNCLRMRPERIILGEV-R--GPE----VLDLLQAMNT 348 (483)
Q Consensus 307 -e------------------------------~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~E----a~~~l~A~~T 348 (483)
. =+++.-.+-.+-.+|=.+|+.+++.|= . |+. .+.+++..+.
T Consensus 102 ~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 181 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 73999899999999999881885665482767799884459988987079989999488667898999999999998759
Q ss_pred CCCEEEHHHCC
Q ss_conf 97010200047
Q gi|254780724|r 349 GHDGSMGTIHA 359 (483)
Q Consensus 349 GH~G~ltTlHa 359 (483)
|.. ++-|-|-
T Consensus 182 ~~T-illssH~ 191 (301)
T TIGR03522 182 DKT-IILSTHI 191 (301)
T ss_pred CCE-EEEECCC
T ss_conf 999-9998785
No 358
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=96.36 E-value=0.0042 Score=40.32 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCHHHCC
Q ss_conf 8999999830387676799964213125
Q gi|254780724|r 264 TTLLNCLTRYIDKDERIVTCEDTAELQL 291 (483)
Q Consensus 264 TT~L~al~~~i~~~~rivtIED~~El~l 291 (483)
+..|.-++..+|.....+.++|..++.+
T Consensus 1064 ~~~l~~~~~~l~~~~~~~~l~d~f~Lef 1091 (1192)
T pfam12128 1064 TQAMRRVLDILPSAALVGGIEDLLDIEL 1091 (1192)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHEEEEE
T ss_conf 9999999987340333346877466689
No 359
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.36 E-value=0.0032 Score=41.16 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.7
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 862258848998188888889999998
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLT 271 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~ 271 (483)
+-+..+..+.|.|+.|||||||+++++
T Consensus 16 l~i~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 16 VDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 898899999998799986999999998
No 360
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.35 E-value=0.0038 Score=40.57 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5884899818888888999999830387
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
..+...+.|+.||||||+|+++...+.+
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~~l~g 48 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYALTG 48 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 0888999989999999999998630477
No 361
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0054 Score=39.55 Aligned_cols=39 Identities=33% Similarity=0.322 Sum_probs=32.9
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 622588489981888888899999983038767679996
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
-.+++...-|.||-|+||||+|++|+.+..|+.-.+++-
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~ 61 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61 (259)
T ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 416872799988898658889998617637888767667
No 362
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=96.34 E-value=0.0038 Score=40.57 Aligned_cols=40 Identities=23% Similarity=0.475 Sum_probs=29.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHH
Q ss_conf 884899818888888999999830387-6767999642131
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAEL 289 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El 289 (483)
..+++|+|.|||||||.++.|+..|-. .+|.|+.--+-|+
T Consensus 185 ~qH~li~GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~F 225 (732)
T PRK13700 185 IQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEF 225 (732)
T ss_pred HHEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 31267746888889999999999999729958999399853
No 363
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.33 E-value=0.011 Score=37.36 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHH
Q ss_conf 79899999999999980981243387787982376203453155357881688840576546678886506998899999
Q gi|254780724|r 163 RDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARL 242 (483)
Q Consensus 163 ~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~ 242 (483)
.+...+.+|+++.+...|.+. .| |..+ -..+.+.++++++ .
T Consensus 107 ~~~~~i~~wv~~~~~~~gl~~------~~--------V~lv---------------Sa~~g~gi~~l~~----------~ 147 (360)
T TIGR03597 107 VNLSKIKEWMKKRAKELGLKP------VD--------IILV---------------SAKKGNGIDELLD----------K 147 (360)
T ss_pred CCHHHHHHHHHHHHHHCCCCC------CC--------EEEE---------------ECCCCCCHHHHHH----------H
T ss_conf 787999999999999859983------66--------8999---------------6888989999999----------9
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89862258848998188888889999998303876767999
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
++.. +.++++.+.|.|.+||+||+|+|+.......+.+|+
T Consensus 148 i~~~-~~~~dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~ 187 (360)
T TIGR03597 148 IKKA-RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITT 187 (360)
T ss_pred HHHH-HCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 9987-169958999168665899999998761677772364
No 364
>PRK06893 DNA replication initiation factor; Validated
Probab=96.32 E-value=0.092 Score=30.94 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHH--HHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE--ECCHHHC-----
Q ss_conf 6546678886506998899999898--6225884899818888888999999830-3876767999--6421312-----
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQI--IGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC--EDTAELQ----- 290 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~~--~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI--ED~~El~----- 290 (483)
....++++++. .-+.+.+..+.. .-.+...+.|.|+.|||||-+|+|+++. .-.....+.+ ++..++.
T Consensus 10 ~~~~tfdnF~~--~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~ 87 (229)
T PRK06893 10 IDDETLDNFYS--DNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLE 87 (229)
T ss_pred CCCCCHHCCCC--CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHH
T ss_conf 98665431546--8749999999975502469879998999998899999999999971898599973775640699998
Q ss_pred -CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCE-EEECCCCCHHH-----HHHHHHHHCCCCEEEHHHCCCC
Q ss_conf -5678756778741666653--0001899998752059988-99657587999-----9999998739701020004788
Q gi|254780724|r 291 -LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPER-IILGEVRGPEV-----LDLLQAMNTGHDGSMGTIHANN 361 (483)
Q Consensus 291 -l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~-IiVGEiRg~Ea-----~~~l~A~~TGH~G~ltTlHa~s 361 (483)
+.+.+.+-+.- .....|+ -+..+.+++ +.++.+... +++.=-+.+.. .++..=+..| ....++..+
T Consensus 88 ~l~~~d~l~iDD-i~~i~g~~~~e~~lF~l~-N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~---~~~~i~~~d 162 (229)
T PRK06893 88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLF-NRIKESGKTLLLISANQSPHALQIKLPDLASRLTWG---EIYQLNDLT 162 (229)
T ss_pred HHHHCCEEEEEC-HHHHCCCHHHHHHHHHHH-HHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCC---EEEEECCCC
T ss_conf 765479799967-234248838999999999-999975991799857988332210026799999688---369966777
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 8889999997553046799989999
Q gi|254780724|r 362 ARESFGRMEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 362 ~~~ai~RL~~m~~~~~~~~~~~~~~ 386 (483)
-..-..=|...+..-|..++.+++.
T Consensus 163 d~~~~~iL~~~a~~rgl~l~~~v~~ 187 (229)
T PRK06893 163 DEQKIEVLQRNAYQRGIELSDETAN 187 (229)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 5799999999999649999989999
No 365
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.32 E-value=0.022 Score=35.23 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=23.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 4899818888888999999830387676
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDER 279 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~r 279 (483)
.|+|+||.||||+|+++.|+...|..-+
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~~ 28 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG 28 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 9999999988999999999851987768
No 366
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.30 E-value=0.0063 Score=39.08 Aligned_cols=106 Identities=21% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHHC-C--CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEE
Q ss_conf 6546678886506998899999898622-5--884899818888888999999830387676799964213125678756
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQIIGR-I--RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVV 297 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~~~v~-~--~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v 297 (483)
.++-++++++...-+......+...... . -.++|+.||.|.||||+.+.+......+-.++.
T Consensus 18 lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s--------------- 82 (234)
T pfam05496 18 LRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITS--------------- 82 (234)
T ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEC---------------
T ss_conf 49897666069499999999999988742777662788789999888999999984087537614---------------
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC--CHHHHHH-HHHHHCCC
Q ss_conf 77874166665300018999987520599889965758--7999999-99987397
Q gi|254780724|r 298 RLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR--GPEVLDL-LQAMNTGH 350 (483)
Q Consensus 298 ~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR--g~Ea~~~-l~A~~TGH 350 (483)
-+..+. .-++..++.+. .+.++++|.||. .....++ +-+|..|.
T Consensus 83 -----~~~i~~--~~di~~~l~~~--~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~ 129 (234)
T pfam05496 83 -----GPALEK--PGDLAAILTNL--EPGDVLFIDEIHRLNRAVEEILYPAMEDFR 129 (234)
T ss_pred -----CHHHHH--HHHHHHHHHHC--CCCCEEEEECHHHCCHHHHHHCCCCCCCCE
T ss_conf -----266643--89999999845--899889996654358768874455334616
No 367
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=96.30 E-value=0.0058 Score=39.30 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=37.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHHHCCCC
Q ss_conf 9862258848998188888889999998303876767999--6421312567
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAELQLQQ 293 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~El~l~~ 293 (483)
.+-+..+..+-.-||.||||||+|+.+.+.-.++.--|++ .|.-.+.+..
T Consensus 20 ~l~v~~G~lvaLLGPSGSGKsTLLR~iAGLe~pd~G~I~~~G~D~t~~~~~~ 71 (241)
T TIGR00968 20 DLEVPTGSLVALLGPSGSGKSTLLRVIAGLEQPDSGRIILNGRDATRVKLRD 71 (241)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 5574385279854689873789999983579998426998520022132013
No 368
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.012 Score=37.13 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf 98899999898622588489981888888899999983038767679996421312567875677874166665300018
Q gi|254780724|r 235 VTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITM 314 (483)
Q Consensus 235 ~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~ 314 (483)
-++.+..+-+.+..+++.+.|+|.-|||||.+.+++....+.+...+.+-|.+-+ +.-++
T Consensus 36 h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~--------------------s~~~~ 95 (269)
T COG3267 36 HNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTL--------------------SDATL 95 (269)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH--------------------HHHHH
T ss_conf 1599999777775178559997447776369999999855788517998357630--------------------17889
Q ss_pred HHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHHCCCCEEEHHHC--CCCHHHHHHHHHHHHHHC
Q ss_conf 9999875205998899--6575879999999998739701020004--788888999999755304
Q gi|254780724|r 315 RDLVKNCLRMRPERII--LGEVRGPEVLDLLQAMNTGHDGSMGTIH--ANNARESFGRMEAMIAMG 376 (483)
Q Consensus 315 ~~ll~~aLR~~PD~Ii--VGEiRg~Ea~~~l~A~~TGH~G~ltTlH--a~s~~~ai~RL~~m~~~~ 376 (483)
.+++-+-|-.+|-+.+ +.|-++.+-.++++-...++.=..--.| ..++-+++.+|.+....+
T Consensus 96 ~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~ 161 (269)
T COG3267 96 LEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDS 161 (269)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHHHCCCC
T ss_conf 999999840583200688999999999999981788737850167661754899999988620346
No 369
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.30 E-value=0.037 Score=33.68 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEE-ECCH--HHCCCCCCEEEEEE--------------------
Q ss_conf 6225884899818888888999999830387-6767999-6421--31256787567787--------------------
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTC-EDTA--ELQLQQPHVVRLET-------------------- 301 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtI-ED~~--El~l~~~~~v~~~~-------------------- 301 (483)
.....+-++|.||.+||||||.+.|.+..-. ..++..| -|+- |+.+| ..+.+..
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pP--g~ISL~~~~s~~~~L~~l~~~~~~FvG 146 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPP--GFISLAFPESPVISLSELEPFTLYFVG 146 (398)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CEEEEECCCCCCCCHHHCCCCCEEEEE
T ss_conf 206873899989867678899999998876447418999689997666797--467741256777777775865227985
Q ss_pred --ECCCCCCCCCCHHHHHHHHHHHCCCCEEEEC---CCCCHHHHH----HHHHHHCCC
Q ss_conf --4166665300018999987520599889965---758799999----999987397
Q gi|254780724|r 302 --RPPNIEGEGEITMRDLVKNCLRMRPERIILG---EVRGPEVLD----LLQAMNTGH 350 (483)
Q Consensus 302 --~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVG---EiRg~Ea~~----~l~A~~TGH 350 (483)
.|+...+.--.-.+.|...+..+ +|.|+|. =++|.++.+ .+.+.+--|
T Consensus 147 ~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~ 203 (398)
T COG1341 147 SISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGWGGLELKRALIDAIKPDL 203 (398)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCCEECCHHHHHHHHHHHHCCCCE
T ss_conf 1477777689999999999986516-87799969984307427899999886509778
No 370
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.29 E-value=0.0065 Score=38.98 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=64.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC------HHHC-----CCCC-CEEEEEEECCCC-----
Q ss_conf 9862258848998188888889999998303876767999642------1312-----5678-756778741666-----
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT------AELQ-----LQQP-HVVRLETRPPNI----- 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~------~El~-----l~~~-~~v~~~~~~~~~----- 306 (483)
.+-++.+-.+-+.||-||||||+++.|+.+++|+.--++|-.- .... +++. +.....+-..+.
T Consensus 27 s~~v~~Gei~gllGpNGAGKSTli~~l~Gl~~p~sG~i~i~G~~~~~~~~~~r~~iG~~pq~~~l~~~ltv~enl~~~~~ 106 (306)
T PRK13536 27 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR 106 (306)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 77885996999999989809999999967957898779999873654568886268997066656757799999999999
Q ss_pred -------------------------------CCCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHHH----HHHHHH-HH
Q ss_conf -------------------------------6530001899998752059988996575-8--7999----999999-87
Q gi|254780724|r 307 -------------------------------EGEGEITMRDLVKNCLRMRPERIILGEV-R--GPEV----LDLLQA-MN 347 (483)
Q Consensus 307 -------------------------------e~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~Ea----~~~l~A-~~ 347 (483)
+=+++.-.+-.+-.+|=.+|+.+++.|- . |+++ +.+++. ..
T Consensus 107 ~~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~iA~aL~~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~ 186 (306)
T PRK13536 107 YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 186 (306)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72999999999999999877985686673777899899999999999559989997587567899999999999999996
Q ss_pred CCCCEEEHHHCCC
Q ss_conf 3970102000478
Q gi|254780724|r 348 TGHDGSMGTIHAN 360 (483)
Q Consensus 348 TGH~G~ltTlHa~ 360 (483)
.|.. ++-|.|-=
T Consensus 187 ~G~T-illttH~l 198 (306)
T PRK13536 187 RGKT-ILLTTHFM 198 (306)
T ss_pred CCCE-EEEECCCH
T ss_conf 8989-99988838
No 371
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.29 E-value=0.0032 Score=41.12 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=52.9
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCC--CCCCE---EEEE---------CCHHHC------CCCCCEEEEEEECCCC
Q ss_conf 22588489981888888899999983038--76767---9996---------421312------5678756778741666
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYID--KDERI---VTCE---------DTAELQ------LQQPHVVRLETRPPNI 306 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~--~~~ri---vtIE---------D~~El~------l~~~~~v~~~~~~~~~ 306 (483)
+..+...-+.||.||||||||++|=...+ +.-|+ |+.+ |..||+ .++||..+
T Consensus 24 I~~n~vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G~v~f~G~dIy~~~~D~~~LR~~vGMVFQ~PNPFp-------- 95 (248)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRKRVGMVFQKPNPFP-------- 95 (248)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCC--------
T ss_conf 037705898778898678999998877640788168888986451145656687887622585214789788--------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHH-HHHHHHHHCCCCEEE----HHHCCCC
Q ss_conf 653000189999875205998899657587999-999999873970102----0004788
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIILGEVRGPEV-LDLLQAMNTGHDGSM----GTIHANN 361 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea-~~~l~A~~TGH~G~l----tTlHa~s 361 (483)
.|..|=+-..+|. -.+++... -+.++..+.|- +-| .-||.|-
T Consensus 96 -----mSIydNiayG~r~-------~G~~~K~~L~e~Ve~sL~~A-ALWDEVKD~L~~sa 142 (248)
T TIGR00972 96 -----MSIYDNIAYGPRL-------HGIKDKKELDEIVEESLKKA-ALWDEVKDRLHDSA 142 (248)
T ss_pred -----CCHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHCCCC
T ss_conf -----4055675452452-------16337789999999998616-87135524213588
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.28 E-value=0.0046 Score=40.03 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 884899818888888999999830387
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
.+.+.|.||.||||||+++.+....+.
T Consensus 22 ~GitaIvGpsGsGKSTLl~~i~~~lg~ 48 (197)
T cd03278 22 PGLTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 982899999999889999999987477
No 373
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.27 E-value=0.08 Score=31.37 Aligned_cols=107 Identities=16% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 84899818888888999999830387676799964213125678756778741666653000189999875205998899
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERII 330 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~Ii 330 (483)
.+|++-||.||||+|.-.-|.. .+.++ .++..|+||+..+.+
T Consensus 1 M~iillGpPGsGKgT~a~~l~~---------------~~~~~------------------hiStGdllR~~i~~~----- 42 (225)
T PTZ00088 1 MKIVLFGAPGVGKGTFAEILSK---------------KEKLK------------------HINMGNILRDEIKKE----- 42 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHH---------------HHCCE------------------EECHHHHHHHHHHCC-----
T ss_conf 9799989999987999999999---------------87990------------------687899999999739-----
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHH------HHHHCCCCCCHHHHHHHH-HHHCCEEEEEEE
Q ss_conf 65758799999999987397010200047888889999997------553046799989999999-742358899987
Q gi|254780724|r 331 LGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEA------MIAMGGFTLPSQMVREII-TSSLDVIVQTQR 401 (483)
Q Consensus 331 VGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~------m~~~~~~~~~~~~~~~~i-a~avd~iV~~~r 401 (483)
+.-...+-..++.|.. +=-.+-..-..+.+.++.. -....|...+...+..+- ...+|+||++.-
T Consensus 43 -----t~lg~~ik~~i~~G~L-VpD~iv~~lv~~~l~~~~~~~~~~~GfILDGfPRt~~QA~~L~~~~~id~vi~l~v 114 (225)
T PTZ00088 43 -----SNIGKEIHKVVRSGNL-VADELIIKIVHDEIAKILAKDGHFKGFILDGFPRNLLQCKELIEITNIDLFVNIHL 114 (225)
T ss_pred -----CHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf -----9889999999977984-66899999999999844424643474365278887799999997467887999966
No 374
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=96.26 E-value=0.0049 Score=39.81 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=5.6
Q ss_pred CEEEECCCCC
Q ss_conf 8899657587
Q gi|254780724|r 327 ERIILGEVRG 336 (483)
Q Consensus 327 D~IiVGEiRg 336 (483)
=++++-|.-.
T Consensus 245 v~~~lDEf~~ 254 (386)
T pfam10412 245 LWFFLDELPS 254 (386)
T ss_pred EEEEEECHHH
T ss_conf 4999987110
No 375
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.26 E-value=0.0079 Score=38.40 Aligned_cols=48 Identities=27% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHH-HHHHCCCCCCEE--EEECCHHHC
Q ss_conf 898622588489981888888899999-983038767679--996421312
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNC-LTRYIDKDERIV--TCEDTAELQ 290 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~a-l~~~i~~~~riv--tIED~~El~ 290 (483)
+.--...+.+++|+|++|||||+|... +.......++.+ |.+.++|.-
T Consensus 16 l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 16 LGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred HCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHH
T ss_conf 368988997899993899868999999999776269858999920698999
No 376
>CHL00176 ftsH cell division protein; Validated
Probab=96.26 E-value=0.014 Score=36.62 Aligned_cols=76 Identities=25% Similarity=0.401 Sum_probs=43.4
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC--HHHCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 9989862258848998188888889999998303876767999642--13125678756778741666653000189999
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT--AELQLQQPHVVRLETRPPNIEGEGEITMRDLV 318 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~--~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll 318 (483)
.|..+-.+.-+.+|..||+|+|||-+.+|+.....- -.+.+--+ .|+. -|.+.--.++|+
T Consensus 201 k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~v--pF~~~sgs~F~e~~----------------vGvga~rVR~LF 262 (631)
T CHL00176 201 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--PFFSISGSEFVEMF----------------VGVGAARVRDLF 262 (631)
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CEEEEEHHHHHHHH----------------CCHHHHHHHHHH
T ss_conf 876449968965898898998788999998565588--46998837855642----------------155589999999
Q ss_pred HHHHHCCCCEEEECCC
Q ss_conf 8752059988996575
Q gi|254780724|r 319 KNCLRMRPERIILGEV 334 (483)
Q Consensus 319 ~~aLR~~PD~IiVGEi 334 (483)
+.|-...|-+|.+.|+
T Consensus 263 ~~Ar~~aP~IiFIDEi 278 (631)
T CHL00176 263 KKAKENSPCIVFIDEI 278 (631)
T ss_pred HHHHHCCCEEEEEEEE
T ss_conf 9998639969998710
No 377
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.0048 Score=39.87 Aligned_cols=39 Identities=33% Similarity=0.218 Sum_probs=33.0
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 898622588489981888888899999983038767679
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIV 281 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~riv 281 (483)
+.+-|.++-+..|.|+-||||||+|+-+..+-|+..-.+
T Consensus 50 isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~ 88 (257)
T COG1119 50 LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88 (257)
T ss_pred CCEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 430536998479988898778999999961258877710
No 378
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.25 E-value=0.0057 Score=39.35 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEE
Q ss_conf 98899999898622588489981888888899999983-0387676799
Q gi|254780724|r 235 VTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVT 282 (483)
Q Consensus 235 ~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivt 282 (483)
.+++...=+.+=++++-.|-|+||-||||+|+-+-+=. |+|.+-||.+
T Consensus 476 D~PeVL~nl~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLV 524 (703)
T TIGR01846 476 DSPEVLSNLSLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLV 524 (703)
T ss_pred CCCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8717873268765786579987278986789999988614888874777
No 379
>PRK10646 putative ATPase; Provisional
Probab=96.25 E-value=0.0093 Score=37.88 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 88999998986225884899818888888999999830387676
Q gi|254780724|r 236 TAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDER 279 (483)
Q Consensus 236 ~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~r 279 (483)
+...+..+..+.+++..|+..|.-|||||||.++++..+.....
T Consensus 14 T~~lg~~la~~l~~g~vi~L~G~LGaGKTtf~r~i~~~lg~~~~ 57 (153)
T PRK10646 14 TLDLGERVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGN 57 (153)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999976899979999888878999999999998499786
No 380
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=96.24 E-value=0.013 Score=36.96 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHH
Q ss_conf 79899999999999980981243387787982376203453155357881688840576546678886506998899999
Q gi|254780724|r 163 RDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARL 242 (483)
Q Consensus 163 ~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~ 242 (483)
.....+.+|+++.+...|.++ .| |..+ | .++.+.+++|++ .
T Consensus 115 ~~~~~~~~wv~~~~~~~gl~~------~d--------V~lv----S-----------ak~g~gv~~L~~----------~ 155 (367)
T PRK13796 115 VKKNKVKNWLRQEAKELGLRP------VD--------VVLI----S-----------AQKGQGIDELLD----------A 155 (367)
T ss_pred CCHHHHHHHHHHHHHHCCCCC------CC--------EEEE----E-----------CCCCCCHHHHHH----------H
T ss_conf 787899999999999759985------52--------8999----4-----------657889999999----------9
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89862258848998188888889999998303876767999
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
+.. .+.++++.+.|.|.+||+||+|+|+.........+|+
T Consensus 156 i~~-~~~~~dvyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~ 195 (367)
T PRK13796 156 IEK-YREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITT 195 (367)
T ss_pred HHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 998-6379858999157575899999999871678773134
No 381
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.23 E-value=0.015 Score=36.40 Aligned_cols=50 Identities=28% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHH-HHHHHHHCC---CCCCEEEEECCHHHCCC
Q ss_conf 9898622588489981888888899-999983038---76767999642131256
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTL-LNCLTRYID---KDERIVTCEDTAELQLQ 292 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~-L~al~~~i~---~~~rivtIED~~El~l~ 292 (483)
.+..+. .+.|+++++|||||||.. +.+++..+. ...+++.+-.+.+|...
T Consensus 7 ~i~~~~-~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q 60 (167)
T pfam00270 7 AIPAIL-EGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQ 60 (167)
T ss_pred HHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
T ss_conf 999997-699789988999758999999999998747789879999060888889
No 382
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.21 E-value=0.0069 Score=38.79 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=30.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 84899818888888999999830387676799964
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..|-|.||.||||||++-.++..+-...++.+|+-
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 89996179986789999999999975277689964
No 383
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.21 E-value=0.017 Score=36.02 Aligned_cols=88 Identities=27% Similarity=0.409 Sum_probs=44.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-C-CCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 4899818888888999999830387-6-7679996421312567875677874166665300018999987520599889
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDK-D-ERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERI 329 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~-~-~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~I 329 (483)
+||+.|++|+|||++...++..+.. . ..+-.-+++.+-.+-+.... ..+...+.-..+++ +++ .+.++
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~--------~~~~~~~~~g~l~~-a~~-~g~vl 70 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNI--------ANGTTSWVDGPLVR-AAR-EGEIA 70 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEEC--------CCCCEEEECCHHHC-CCC-CCCEE
T ss_conf 989998997569999999999807983111214655652220573423--------79935781551410-101-28689
Q ss_pred EECCCC--CHHHHH-HHHHHHCC
Q ss_conf 965758--799999-99998739
Q gi|254780724|r 330 ILGEVR--GPEVLD-LLQAMNTG 349 (483)
Q Consensus 330 iVGEiR--g~Ea~~-~l~A~~TG 349 (483)
++.|+- .+++.. +++++..+
T Consensus 71 ~lDEin~a~~~v~~~L~~~le~~ 93 (139)
T pfam07728 71 VLDEINRANPDVLNSLLSLLDER 93 (139)
T ss_pred EECCHHHCCHHHHHHHHHHHCCC
T ss_conf 96343448999999999997489
No 384
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.21 E-value=0.013 Score=36.79 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCEEEEECCCCEEEEE--CCEEE----ECCCCCCCHHHHHHHHHHH----------HHHHCCCCCCCCCEEEEEECCCCE
Q ss_conf 2179985699189982--78389----7176207989999999999----------998098124338778798237620
Q gi|254780724|r 136 IADIMVNGSNKVFIEV--NGKTV----ETGINFRDNEQLLSVCQRI----------VNQVGRRVDESSPICDARLLDGSR 199 (483)
Q Consensus 136 VsdI~ing~~~I~ve~--~G~~~----~~~~~f~~~~~l~~~i~rl----------a~~~g~~i~~~~P~~d~~lpdg~R 199 (483)
|.=+.+-|..+|.-.+ .|.+- +.-..-.+-..|.++..-+ ......+-|-..|..=..||...|
T Consensus 256 iv~vLW~Ga~DV~aG~mSaG~Lg~Fv~YA~~vAgs~g~LSEVwGElQrAaGAaERl~ELL~~~~dI~aP~~P~~lP~p~~ 335 (576)
T TIGR02204 256 IVGVLWVGAHDVLAGKMSAGELGQFVLYAVMVAGSIGALSEVWGELQRAAGAAERLIELLQAKPDIKAPAQPKTLPVPVR 335 (576)
T ss_pred HHHHHHHCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999834131224777845489999999999988989999999999853168999998535777788698887898864
Q ss_pred EEEECCCCCCCCCEEEEEEC-CCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 34531553578816888405-76546678886506998899999898622588489981888888899999983038767
Q gi|254780724|r 200 VNVIIPPLALDGPTLTIRKF-KKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDE 278 (483)
Q Consensus 200 i~~~~~p~s~~G~~i~IRk~-~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ 278 (483)
-.+... .+..+-+ +++.+.|++ +.+.++++..+-+.||-|+||||++.=|+.|.+|..
T Consensus 336 Gei~F~-------~V~F~YP~RPd~~aL~~--------------~~L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~~ 394 (576)
T TIGR02204 336 GEIEFE-------QVNFAYPARPDQPALDG--------------LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred EEEEEC-------CCCCCCCCCCCCHHHCC--------------CCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 027761-------22325879888042325--------------772562776588766887627999999986048887
Q ss_pred CEEEE-------ECCHHHC
Q ss_conf 67999-------6421312
Q gi|254780724|r 279 RIVTC-------EDTAELQ 290 (483)
Q Consensus 279 rivtI-------ED~~El~ 290 (483)
=-|-+ =||.|++
T Consensus 395 G~ilLDGvd~r~~dP~~lR 413 (576)
T TIGR02204 395 GRILLDGVDIRDLDPADLR 413 (576)
T ss_pred CEEEECCCCHHHCCCHHHH
T ss_conf 6577466414016808788
No 385
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.18 E-value=0.0071 Score=38.70 Aligned_cols=17 Identities=12% Similarity=0.466 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 899999999999980981
Q gi|254780724|r 165 NEQLLSVCQRIVNQVGRR 182 (483)
Q Consensus 165 ~~~l~~~i~rla~~~g~~ 182 (483)
..++.++++++.. .|+.
T Consensus 180 ~~~v~~ll~~l~~-~G~t 196 (648)
T PRK10535 180 GEEVMAILHQLRD-RGHT 196 (648)
T ss_pred HHHHHHHHHHHHH-CCCE
T ss_conf 9999999999997-7999
No 386
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.18 E-value=0.0075 Score=38.52 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 86225884899818888888999999830387676799964
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+-+..+..+.+.|+-|+||||+|++++..+++..--|+.+.
T Consensus 24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G 64 (237)
T COG0410 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64 (237)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 58768988999899988889999998589878870699898
No 387
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=96.18 E-value=0.0097 Score=37.77 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 89999989862258848998188888889999998303876
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
+....-+..+.-++-|+|+.|+.|+|||++.+.+....|+-
T Consensus 9 ~~akrAl~iAaaG~H~lLl~GpPG~GKTmlA~rl~~iLP~l 49 (207)
T pfam01078 9 EQAKRALEIAAAGGHNLLMIGPPGSGKTMLAKRLPGILPPL 49 (207)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99999999985478758978899802999997630148998
No 388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.17 E-value=0.011 Score=37.35 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCCCHHHHHHCCCCCHHHHHH---HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEE
Q ss_conf 546678886506998899999---8986225884899818888888999999830387-6767999
Q gi|254780724|r 222 DKLTLDHLVSFGAVTAEGARL---LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTC 283 (483)
Q Consensus 222 ~~~~l~~l~~~g~~~~~~~~~---l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtI 283 (483)
..+++++++. -++.|... ...+.+...+|||.|.||+||+++..++-..-+. +...++|
T Consensus 320 ~~~~f~~l~g---~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~v 382 (639)
T PRK11388 320 VSHTFDHMPQ---DSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAV 382 (639)
T ss_pred CCCCHHHCCC---CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8888554467---99999999999999968899689889898109999999995577789981898
No 389
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.17 E-value=0.0097 Score=37.75 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998986225884899818888888999999830387
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
..+++.....++++.|.|.|++||+|++|+|+.....
T Consensus 117 ~~~i~~~~~~~~~vyvvG~~NvGKSTLiN~Ll~~~~~ 153 (190)
T cd01855 117 INAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNG 153 (190)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999997466985799805875467999998630234
No 390
>PRK13409 putative ATPase RIL; Provisional
Probab=96.16 E-value=0.018 Score=35.82 Aligned_cols=36 Identities=33% Similarity=0.325 Sum_probs=29.6
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 225884899818888888999999830387676799
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVT 282 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivt 282 (483)
+..+--+.|.|+-|+|||||++.|++.+.|+.--+.
T Consensus 362 i~~GEiigIvG~NGaGKTTLlKiLaG~lkPd~G~V~ 397 (590)
T PRK13409 362 IRKGEVIGIVGPNGIGKTTFVKLLAGVLKPDEGEVD 397 (590)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 604748999888888789999998288778874475
No 391
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.16 E-value=0.0064 Score=39.00 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=29.4
Q ss_pred CCEEEECCCCCCHHHHH-HHHHHHCC--CCCCEEEEECCHHHCC
Q ss_conf 84899818888888999-99983038--7676799964213125
Q gi|254780724|r 251 CNVLISGGTGSGKTTLL-NCLTRYID--KDERIVTCEDTAELQL 291 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L-~al~~~i~--~~~rivtIED~~El~l 291 (483)
+|++|.+|||||||+.. ..++..+. ...+++.+-.+.++..
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 44 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELAN 44 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 99999889971799999999999997568976999746799999
No 392
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0078 Score=38.40 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=35.9
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-------ECCHHHC
Q ss_conf 9862258848998188888889999998303876767999-------6421312
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-------EDTAELQ 290 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-------ED~~El~ 290 (483)
.+-+..+--+++.||.||||||+|+-+-..+.|+.--|.| +|+.||+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
T ss_conf 577659728999878997578799999605588885389899044658889998
No 393
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.14 E-value=0.0052 Score=39.63 Aligned_cols=28 Identities=43% Similarity=0.655 Sum_probs=22.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5884899818888888999999830387
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
.+.|||..||||||||-+.+.|..++.-
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~l~v 135 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARILNV 135 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3453899899997788999999998699
No 394
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0093 Score=37.90 Aligned_cols=40 Identities=35% Similarity=0.355 Sum_probs=34.0
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-..++--+-|.|..||||||+|++++..++|+.-.++...
T Consensus 28 ~l~PGeVLgiVGESGSGKtTlL~~is~rl~p~~G~v~Y~~ 67 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67 (258)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 2227737999705887577699998645688777378984
No 395
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.11 E-value=0.0062 Score=39.13 Aligned_cols=43 Identities=28% Similarity=0.300 Sum_probs=36.0
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8986225884899818888888999999830387676799964
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+.+-++++..+.|.|.-||||||+++-|+++..|..--+.+-.
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 0277679988999879999889999998367888885599998
No 396
>KOG0061 consensus
Probab=96.11 E-value=0.0051 Score=39.68 Aligned_cols=34 Identities=35% Similarity=0.394 Sum_probs=29.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9862258848998188888889999998303876
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
...++++...-|-||-||||||+||+|.+..+..
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~ 83 (613)
T KOG0061 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG 83 (613)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 7998678689997688877999999995778878
No 397
>KOG0926 consensus
Probab=96.10 E-value=0.033 Score=34.03 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=56.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHH-H--HC---CCCCCEEEEECCH-------------HHCCCCCCEEEEEEECCC
Q ss_conf 862258848998188888889999998-3--03---8767679996421-------------312567875677874166
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLT-R--YI---DKDERIVTCEDTA-------------ELQLQQPHVVRLETRPPN 305 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~-~--~i---~~~~rivtIED~~-------------El~l~~~~~v~~~~~~~~ 305 (483)
-++...--++|||.|||||||.+--++ . |- .++--+|-|-.|+ ||.. +.+-|..+.|...
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIRfd~ 344 (1172)
T KOG0926 266 EAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIRFDG 344 (1172)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECC
T ss_conf 986228749995488888644341899871347766799870540572278999999999998525-7641148998536
Q ss_pred -CCC-------CCCCHHHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf -665-------30001899998752059988996575879
Q gi|254780724|r 306 -IEG-------EGEITMRDLVKNCLRMRPERIILGEVRGP 337 (483)
Q Consensus 306 -~e~-------~~~~t~~~ll~~aLR~~PD~IiVGEiRg~ 337 (483)
... ..++=+.++-..+|-..=..||+.|.--.
T Consensus 345 ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER 384 (1172)
T KOG0926 345 TIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER 384 (1172)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHCEEEEECHHHHC
T ss_conf 5688740477402388999887675542015785125430
No 398
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.10 E-value=0.0077 Score=38.44 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8622588489981888888899999983038767679996
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
+-++.+-.+-|.|+-||||||++++|+...+++.--|++.
T Consensus 305 ~~v~~GEi~gi~G~nGsGKsTL~k~l~Gl~~p~~G~V~~~ 344 (520)
T TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344 (520)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 8972896899987888878999999948878987479997
No 399
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.09 E-value=0.017 Score=36.12 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 99898622588489981888888899999983038767679996421312567875677874166665300018999987
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
.|....-.+.++++++|+.|+|||.|..|+...+-....-|..-...+|.-.-.. .-+.+..+-.++++.
T Consensus 87 ~y~enf~~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~----------t~~~~~~~e~~~l~~ 156 (242)
T PRK07952 87 QYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD----------TFRNSETSEEQLLND 156 (242)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH----------HHHCCCCCHHHHHHH
T ss_conf 9998654388717997899997899999999999987994999779999999999----------980687569999998
Q ss_pred HHHCCCCEEEECCCC
Q ss_conf 520599889965758
Q gi|254780724|r 321 CLRMRPERIILGEVR 335 (483)
Q Consensus 321 aLR~~PD~IiVGEiR 335 (483)
.. ++|-+|+.|+-
T Consensus 157 l~--~~dLLIiDdlG 169 (242)
T PRK07952 157 LS--NVDLLVIDEIG 169 (242)
T ss_pred HH--CCCEEEEECCC
T ss_conf 63--18989873014
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.022 Score=35.23 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=57.8
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHH-HCCC-C-CCEEEE-ECCHHHC----CC---CCCEEEEEEECCCCCCCCCCHHH
Q ss_conf 22588489981888888899999983-0387-6-767999-6421312----56---78756778741666653000189
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTR-YIDK-D-ERIVTC-EDTAELQ----LQ---QPHVVRLETRPPNIEGEGEITMR 315 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~-~i~~-~-~rivtI-ED~~El~----l~---~~~~v~~~~~~~~~e~~~~~t~~ 315 (483)
++.+|.+-+.||||.||||++.-|.. +.-. . .++..| -|++-+. |. ..-.|++..- ...-++.
T Consensus 345 ~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~------~~~~~l~ 418 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEA------DSAESLL 418 (557)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE------CCHHHHH
T ss_conf 5407647874377767311799999999997399818999726640879999999999839757982------8999999
Q ss_pred HHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHHCCC-CEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 9998752059988996575----8799999999987397-0102000478888899999975
Q gi|254780724|r 316 DLVKNCLRMRPERIILGEV----RGPEVLDLLQAMNTGH-DGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 316 ~ll~~aLR~~PD~IiVGEi----Rg~Ea~~~l~A~~TGH-~G~ltTlHa~s~~~ai~RL~~m 372 (483)
++|... .+-|.|+|.-. ||.....-++....+. .-.+-.+-|++-.+.+.....-
T Consensus 419 ~~l~~l--~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~ 478 (557)
T PRK12727 419 DLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRR 478 (557)
T ss_pred HHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 999983--699989994999884699999999987514776359999688998999999998
No 401
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=96.06 E-value=0.0079 Score=38.39 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=84.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH---HHC-CCCCCEEEEEEECCCCCCCCCCH---HHHHH
Q ss_conf 622588489981888888899999983038767679996421---312-56787567787416666530001---89999
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA---ELQ-LQQPHVVRLETRPPNIEGEGEIT---MRDLV 318 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~---El~-l~~~~~v~~~~~~~~~e~~~~~t---~~~ll 318 (483)
+.+.--++.+.|++||||||+|-+|+.-+-..-|-|-.=.|. +|. .--|+.|.-.+.....|=.-..+ +....
T Consensus 9 Ll~~pFrmaivGgSGSGKT~yLlsLf~tlv~kykhIfLfTpv~N~~Yd~YVwPdHV~~vtt~eeleY~L~~~k~kIek~~ 88 (241)
T pfam04665 9 LLAAPFRMAIVGGSGSGKTTYLLSLLRTLVRKFKHIFLFTPVYNNAYDGYVWPDHIFKVTTNEELEYALSKTKEKIEKFS 88 (241)
T ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 74087359998158875669999999999774158999624467323652577732562572357789999999999999
Q ss_pred HHHHHCCC---CEEEECCCCCHHHH--HHHHHHHCCCCEEEHHH-------CCC-CHHHHHH----------HHHHHHHH
Q ss_conf 87520599---88996575879999--99999873970102000-------478-8888999----------99975530
Q gi|254780724|r 319 KNCLRMRP---ERIILGEVRGPEVL--DLLQAMNTGHDGSMGTI-------HAN-NARESFG----------RMEAMIAM 375 (483)
Q Consensus 319 ~~aLR~~P---D~IiVGEiRg~Ea~--~~l~A~~TGH~G~ltTl-------Ha~-s~~~ai~----------RL~~m~~~ 375 (483)
+.+..+.- --||.+.+-+..+. .++.-+|.|-.--+|++ |-+ +.++.++ -+++|.
T Consensus 89 ~~~~~~k~~~~fLiIlDD~Gd~q~rs~~L~~f~N~gRH~n~Sii~Lcqty~Hvp~n~R~Sith~cccNvs~sD~enil-- 166 (241)
T pfam04665 89 KKASNQKENFRFLIILDDLGDMQTRSKTLLNFTNHGRHLNISIILLCQTYKHVPVNGRDSITHFCCCNVSDSDLENIL-- 166 (241)
T ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHH--
T ss_conf 860266641048999625553233115777664016101011134442211049987432048998315466687644--
Q ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEEECC
Q ss_conf 4679998999999974235889998769998789999999841498
Q gi|254780724|r 376 GGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEGN 421 (483)
Q Consensus 376 ~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~e~~ 421 (483)
.+|+...-...+.+++++.-.. .++|+|- |.|=.-+.+|
T Consensus 167 --rsmsi~~~Kk~ll~~v~i~r~~----~~kr~v~-IIedsVf~~g 205 (241)
T pfam04665 167 --RSMSIRGSKKLLLRAVNIMRSA----EKKRRVY-IIEDSVFCEG 205 (241)
T ss_pred --HCCCCCCCHHHHHHHHHHHHHH----HCCCEEE-EEEECCCCCC
T ss_conf --1376301178899999999866----1384599-9970112478
No 402
>PRK10744 phosphate transporter subunit; Provisional
Probab=96.04 E-value=0.0059 Score=39.29 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9862258848998188888889999998303
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i 274 (483)
.+-+..+..+.+.|+.||||||+++.|..+.
T Consensus 30 sl~i~~Ge~~~liG~nGaGKSTLlk~i~gl~ 60 (257)
T PRK10744 30 NLDIAKNQVTAFIGPSGCGKSTLLRTFNKMY 60 (257)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899899999999981999999998765
No 403
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.011 Score=37.44 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=58.9
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCC---CEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 998986225884899818888888999999830387676799964213125678---75677874166665300018999
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQP---HVVRLETRPPNIEGEGEITMRDL 317 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~---~~v~~~~~~~~~e~~~~~t~~~l 317 (483)
.-+..-++.+--|-|.|+|||||||++.-+....+++.--++.+...=-.++.. ..+.+.++ + .-=|++-
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Q------r-~hlF~~T 427 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQ------R-VHLFSGT 427 (573)
T ss_pred HCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHCC------C-HHHHHHH
T ss_conf 05651325887688877999878999999972358788736578867331883668998754123------2-1777778
Q ss_pred HHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 9875205-99889965758799999999987397
Q gi|254780724|r 318 VKNCLRM-RPERIILGEVRGPEVLDLLQAMNTGH 350 (483)
Q Consensus 318 l~~aLR~-~PD~IiVGEiRg~Ea~~~l~A~~TGH 350 (483)
+++-||. +|| .-|.|.++++|...-.|
T Consensus 428 lr~NL~lA~~~------AsDEel~~aL~qvgL~~ 455 (573)
T COG4987 428 LRDNLRLANPD------ASDEELWAALQQVGLEK 455 (573)
T ss_pred HHHHHHHCCCC------CCHHHHHHHHHHCCHHH
T ss_conf 99877305999------98899999999818799
No 404
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.01 E-value=0.0079 Score=38.39 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=48.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCEEEEEEECCC
Q ss_conf 9862258848998188888889999998303876767999642131256-7875677874166
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQ-QPHVVRLETRPPN 305 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~-~~~~v~~~~~~~~ 305 (483)
.+-|..+-.+-|-||-|+||+|+||-+.+|+.|-.--++|.|.--...+ ....++|....-|
T Consensus 18 ~L~V~~Ge~VAi~GpSGAGKSTLLnLiAGF~~PasG~i~~nd~~~t~~aPy~RPvSMLFQEnN 80 (213)
T TIGR01277 18 DLSVEDGERVAILGPSGAGKSTLLNLIAGFLEPASGEIKVNDKDHTRLAPYRRPVSMLFQENN 80 (213)
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 041301776888758986278898778640477640588778012268887777503432210
No 405
>KOG1970 consensus
Probab=96.01 E-value=0.01 Score=37.62 Aligned_cols=17 Identities=41% Similarity=0.796 Sum_probs=5.6
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 99818888888999999
Q gi|254780724|r 254 LISGGTGSGKTTLLNCL 270 (483)
Q Consensus 254 lVsG~TGSGKTT~L~al 270 (483)
|+|||+|+||||++.-|
T Consensus 114 LltGPsGcGKSTtvkvL 130 (634)
T KOG1970 114 LLTGPSGCGKSTTVKVL 130 (634)
T ss_pred EEECCCCCCCHHHHHHH
T ss_conf 98579888713199999
No 406
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.98 E-value=0.051 Score=32.72 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 899818888888999999830
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~ 273 (483)
|++.||+||||+|....|+..
T Consensus 2 i~l~G~PGsGKgTqa~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899899999879999999999
No 407
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=95.98 E-value=0.0063 Score=39.09 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=18.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 884899818888888999999830387
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
.+|||..||||+|||.+.+.|+..+..
T Consensus 50 pkNILmIGPTGvGKTeIARrLAkl~~a 76 (442)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (442)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 431688788886678999999998489
No 408
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.019 Score=35.77 Aligned_cols=75 Identities=28% Similarity=0.467 Sum_probs=57.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98622588489981888888899999983038767679996421312567875677874166665300018999987520
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLR 323 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR 323 (483)
+...++.+.+|+.||.|+|||.+..|+.. ..+.+++.+-.+ +|.-. |+ |..+-.++.++..+.+
T Consensus 270 ~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~-~l~sk---~v----------Gesek~ir~~F~~A~~ 333 (494)
T COG0464 270 KLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS-ELLSK---WV----------GESEKNIRELFEKARK 333 (494)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHH--HCCCCEEEECCH-HHHHH---HH----------HHHHHHHHHHHHHHHH
T ss_conf 25898883699988999758999999875--449824884335-55407---76----------5999999999999996
Q ss_pred CCCCEEEECCC
Q ss_conf 59988996575
Q gi|254780724|r 324 MRPERIILGEV 334 (483)
Q Consensus 324 ~~PD~IiVGEi 334 (483)
..|-+|.+-|+
T Consensus 334 ~~p~iifiDEi 344 (494)
T COG0464 334 LAPSIIFIDEI 344 (494)
T ss_pred CCCCEEEHHHH
T ss_conf 69988974886
No 409
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=95.96 E-value=0.0038 Score=40.64 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=41.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCC-EEEE-ECCHHHCCCCCCEE--EEEEE------CCCCCCCCC--CHHH------H
Q ss_conf 9818888888999999830387676-7999-64213125678756--77874------166665300--0189------9
Q gi|254780724|r 255 ISGGTGSGKTTLLNCLTRYIDKDER-IVTC-EDTAELQLQQPHVV--RLETR------PPNIEGEGE--ITMR------D 316 (483)
Q Consensus 255 VsG~TGSGKTT~L~al~~~i~~~~r-ivtI-ED~~El~l~~~~~v--~~~~~------~~~~e~~~~--~t~~------~ 316 (483)
|.||.||||||+.+++.++.....| +.+| =||.--.++.+-.+ +.... .-+..+.|+ +.+. +
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPNGali~~me~l~~~~d 80 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPNGALTVAMDFGRITLD 80 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98989898899999999999977997599978986658999877717874679999998298973899999999999999
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 99875205998899657
Q gi|254780724|r 317 LVKNCLRMRPERIILGE 333 (483)
Q Consensus 317 ll~~aLR~~PD~IiVGE 333 (483)
-+...|....|+++++-
T Consensus 81 ~l~~~l~~~~~y~l~Dt 97 (234)
T pfam03029 81 WLLEELEYEDDYYLFDT 97 (234)
T ss_pred HHHHHHCCCCCEEEEEC
T ss_conf 99998525577699836
No 410
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0074 Score=38.56 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
.....++--+.|.|+-||||||+|+.++....|+.--|-+++
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 478748877999899987588999999712687777578547
No 411
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0068 Score=38.83 Aligned_cols=27 Identities=41% Similarity=0.677 Sum_probs=18.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 588489981888888899999983038
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYID 275 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~ 275 (483)
.+.|||..||||||||-+...|...++
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred EECCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 203179988899757799999999848
No 412
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.93 E-value=0.057 Score=32.39 Aligned_cols=122 Identities=15% Similarity=0.239 Sum_probs=67.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 489981888888899999983038-7676799964213125678756778741666653000189999875205998899
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYID-KDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERII 330 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~-~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~Ii 330 (483)
.|++||-+||||||+.+.|..+.. ...+++.+++.. +.-..+.| ....|....-....+++.+|.. .+.||
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~-~~~~~~~~------~~~~Ek~~r~~~~~~v~~~l~~-~~~vI 72 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDL-IRESFPVW------KEKYEEFIRDSTLYLIKTALKN-KYSVI 72 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHC------CHHHHHHHHHHHHHHHHHHHCC-CCEEE
T ss_conf 9789678999899999999999998299659965520-02120003------3677999899999999998433-76699
Q ss_pred ECCC---CCH--HHHHHHHHHHCCCCEEEHHHCCCCHHHHH-HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 6575---879--99999999873970102000478888899-99997553046799989999999
Q gi|254780724|r 331 LGEV---RGP--EVLDLLQAMNTGHDGSMGTIHANNARESF-GRMEAMIAMGGFTLPSQMVREII 389 (483)
Q Consensus 331 VGEi---Rg~--Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai-~RL~~m~~~~~~~~~~~~~~~~i 389 (483)
+.-. +|- |.+-+-++..|+| +++|...+.+.. .|=.. -+..+|.+.+..++
T Consensus 73 ~D~~nYiKg~RYEL~clAk~~~t~~----c~I~~~~p~e~c~~~N~~----R~~~~~~e~i~~m~ 129 (249)
T TIGR03574 73 VDDTNYYNSKRRDLINIAKEYNKNY----IIIYLKAPLDTLLRRNIE----RGEKIPNEVIKDMY 129 (249)
T ss_pred ECCCCHHHHHHHHHHHHHHHCCCCE----EEEEECCCHHHHHHHHHH----CCCCCCHHHHHHHH
T ss_conf 7273278899999999999849986----999973999999998760----68999999999999
No 413
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.93 E-value=0.02 Score=35.60 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHH
Q ss_conf 8999998986225884--899818888888999999830387676799964213
Q gi|254780724|r 237 AEGARLLQIIGRIRCN--VLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAE 288 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~n--ilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~E 288 (483)
..+++-.+.....++. +=+.+..||||||+|-..+..+....++.+||--.+
T Consensus 89 d~~A~~NR~~f~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~ 142 (290)
T PRK10463 89 NRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ 142 (290)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 999999999999879189993069987889999999998733675799960423
No 414
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=95.92 E-value=0.0087 Score=38.10 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 2588489981888888899999983038
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYID 275 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~ 275 (483)
+...||.|.|.+++|||||+|+|+....
T Consensus 1 ~~~rnVaivG~~n~GKSTL~n~Ll~~~~ 28 (185)
T pfam00009 1 KRHRNIGIIGHVDHGKTTLTDALLYVTG 28 (185)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9967899993899449999999971548
No 415
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.91 E-value=0.013 Score=36.88 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9988999998986225884899818888888999999830
Q gi|254780724|r 234 AVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 234 ~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
.++..+..-|..+. ..+.+++|||+|.||||..++++..
T Consensus 350 ~l~~~Qk~AL~~~~-~~Kv~iLTGGPGTGKtT~t~~i~~~ 388 (769)
T TIGR01448 350 KLSEEQKEALKTAI-QDKVVILTGGPGTGKTTITKAIIEL 388 (769)
T ss_pred CHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 70688999999986-0948998577888616899999999
No 416
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.90 E-value=0.019 Score=35.72 Aligned_cols=98 Identities=20% Similarity=0.338 Sum_probs=56.9
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 99989862258848998188888889999998303876767999642131256787567787416666530001899998
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVK 319 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~ 319 (483)
..|....-....|+++.|+||.|||-|.+++...+-....-|..=...+|.-. ...... ....+..+.+.
T Consensus 173 ~~fi~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~-l~~~~~---------~~~~~~~~~~~ 242 (330)
T PRK06835 173 LNFIKNFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIEN-LREIRF---------NNDNDAPELED 242 (330)
T ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHC---------CCCCCHHHHHH
T ss_conf 99987247888866988999998899999999999987994999629999999-999754---------57644899999
Q ss_pred HHHHCCCCEEEECCCCC---HH--HHHHHHHHHCC
Q ss_conf 75205998899657587---99--99999998739
Q gi|254780724|r 320 NCLRMRPERIILGEVRG---PE--VLDLLQAMNTG 349 (483)
Q Consensus 320 ~aLR~~PD~IiVGEiRg---~E--a~~~l~A~~TG 349 (483)
.. .+.|.+|+.++-- .+ ...+++-.|.-
T Consensus 243 ~l--~~~DLLIIDDLG~E~~t~~~~~~Lf~iIN~R 275 (330)
T PRK06835 243 LL--INCDLLIIDDLGTESITEFSKTELFNLINKR 275 (330)
T ss_pred HH--HHCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99--6189899721034558868999999999999
No 417
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.013 Score=36.87 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=33.5
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 2258848998188888889999998303876767999642
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
+..+-.+.|.|+.||||||+|+++...+++..--+.+.+.
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~ 66 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV 66 (258)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 5798689998788886899999986665888615996562
No 418
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=95.89 E-value=0.0057 Score=39.37 Aligned_cols=246 Identities=22% Similarity=0.317 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHCCC-----------CCHHHHCCCCCCEEEEECCC-----
Q ss_conf 899999999999999974187-7896789999999999885656-----------33588588332179985699-----
Q gi|254780724|r 83 SQSARDEIATLMNEIVSVKKI-TMSLDEQLDLFEDLCNDILGYG-----------PLQPLIARDDIADIMVNGSN----- 145 (483)
Q Consensus 83 ~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~l~~~i~~e~~glG-----------pL~~ll~D~~VsdI~ing~~----- 145 (483)
+.+.+.+++.+++++-..... -+-.+|..-++ |-| -|.|+|.+= .|-|-|.-
T Consensus 283 RGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIV--------GAGATSGGsmDASNLLKPaL~~G---~iRCIGsTTy~EY 351 (774)
T TIGR02639 283 RGDFEERLKAVVSEIEKEPNANILFIDEIHTIV--------GAGATSGGSMDASNLLKPALASG---KIRCIGSTTYEEY 351 (774)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEE--------ECCCCCCHHHHHHHHHHHHHHCC---CEEEECCCCHHHH
T ss_conf 424789999999998528999546641101033--------17878751552443211253078---7786226524864
Q ss_pred CEEEEEC----CEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCC------------CCEEEEEECCC---------C
Q ss_conf 1899827----83897176207989999999999998098--12433------------87787982376---------2
Q gi|254780724|r 146 KVFIEVN----GKTVETGINFRDNEQLLSVCQRIVNQVGR--RVDES------------SPICDARLLDG---------S 198 (483)
Q Consensus 146 ~I~ve~~----G~~~~~~~~f~~~~~l~~~i~rla~~~g~--~i~~~------------~P~~d~~lpdg---------~ 198 (483)
+=|++++ .|.++.++.-.|.++-..+.+-|...--. .+..+ +=+.|.-|||- .
T Consensus 352 ~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~ryI~DRfLPDKAIDviDEaGA 431 (774)
T TIGR02639 352 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 431 (774)
T ss_pred HCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 11101020216542331179578889999998655420132501138699999999988860257898543228899999
Q ss_pred --EEEE------E-----------CCCCCCC---CCEEEEEECCCCCCCHHH-HHHCCCCCHHH-----------HHHHH
Q ss_conf --0345------3-----------1553578---816888405765466788-86506998899-----------99989
Q gi|254780724|r 199 --RVNV------I-----------IPPLALD---GPTLTIRKFKKDKLTLDH-LVSFGAVTAEG-----------ARLLQ 244 (483)
Q Consensus 199 --Ri~~------~-----------~~p~s~~---G~~i~IRk~~~~~~~l~~-l~~~g~~~~~~-----------~~~l~ 244 (483)
|++. . +|.++.. -....|=+.|...++.++ -.++..+...+ ..+-.
T Consensus 432 ~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~ 511 (774)
T TIGR02639 432 AFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREKLKNLEKELKAKIFGQDEAIEQLVS 511 (774)
T ss_pred HHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99971202776432011253000478785444999998871899415426447988720447630131515899999999
Q ss_pred HH----------HCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCEEEEECCHHHCCCCCCEEE-EEEECC-CCCCCCC
Q ss_conf 86----------2258848998188888889999998303876-767999642131256787567-787416-6665300
Q gi|254780724|r 245 II----------GRIRCNVLISGGTGSGKTTLLNCLTRYIDKD-ERIVTCEDTAELQLQQPHVVR-LETRPP-NIEGEGE 311 (483)
Q Consensus 245 ~~----------v~~~~nilVsG~TGSGKTT~L~al~~~i~~~-~rivtIED~~El~l~~~~~v~-~~~~~~-~~e~~~~ 311 (483)
.+ -+|-+|.|++||||-|||.+-+.|...+.=+ +|. |.-||+-.| .|. |.=.|+ .+ +
T Consensus 512 aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RF----DMSEYmEKH--TVsRLIGsPPGYV----G 581 (774)
T TIGR02639 512 AIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRF----DMSEYMEKH--TVSRLIGSPPGYV----G 581 (774)
T ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCC----CCHHHHHHH--HHHHHHCCCCCCC----C
T ss_conf 99998742477888168888647989625788999999708200104----650446899--9987416888851----3
Q ss_pred CHHHHHHHHHHHCCCCE-EEECCCC--CHHHH-HHHHHHHCC
Q ss_conf 01899998752059988-9965758--79999-999998739
Q gi|254780724|r 312 ITMRDLVKNCLRMRPER-IILGEVR--GPEVL-DLLQAMNTG 349 (483)
Q Consensus 312 ~t~~~ll~~aLR~~PD~-IiVGEiR--g~Ea~-~~l~A~~TG 349 (483)
+.--=||-.|-|.+|.- +++-||= -+..+ .+||-|=-+
T Consensus 582 fEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~A 623 (774)
T TIGR02639 582 FEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 623 (774)
T ss_pred CCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 167772122331288535423466663133666787663354
No 419
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=95.87 E-value=0.011 Score=37.49 Aligned_cols=189 Identities=15% Similarity=0.245 Sum_probs=91.0
Q ss_pred HHHHHHHHC-CHHHHHHC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEE
Q ss_conf 999998851-97876408-9899999999999999974187789678999999999988565633588588332179985
Q gi|254780724|r 65 IFTTLIEMI-DITQLSQY-DSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVN 142 (483)
Q Consensus 65 i~~~l~~~~-d~~~~~~~-~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~in 142 (483)
+.....|.+ +.+....+ ++++.-..|......++...=.....+..+..++.+..=.+. |. |.+-
T Consensus 333 LnSsIIEd~nGIETIKsL~sE~~~y~KId~~F~~yL~K~f~y~k~~~~Q~AiK~~~~LiL~------------Vv-ILW~ 399 (710)
T TIGR01193 333 LNSSIIEDLNGIETIKSLTSEAERYKKIDSEFEDYLNKSFKYQKADQVQQAIKAVLKLILN------------VV-ILWV 399 (710)
T ss_pred HHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHH
T ss_conf 4447662587510010052366777666788888888887778889998999999878876------------66-5344
Q ss_pred CCCCEEEEE--CCEEEECC---CCCCCHHHHHHHHH---HH--HHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 699189982--78389717---62079899999999---99--9980981243387787982376203453155357881
Q gi|254780724|r 143 GSNKVFIEV--NGKTVETG---INFRDNEQLLSVCQ---RI--VNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGP 212 (483)
Q Consensus 143 g~~~I~ve~--~G~~~~~~---~~f~~~~~l~~~i~---rl--a~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~ 212 (483)
|.--|.-.+ =|++--.+ -=|.+| |.++++ +| |.-++-|+||-- .||....++..+.... ..+|
T Consensus 400 Ga~lVm~~k~tlGqLiTfNALl~YFl~P--LeNIINLQpKLQ~ArVANnRLNEVY-LV~SEF~~~~~~t~~~---~lng- 472 (710)
T TIGR01193 400 GAILVMRGKLTLGQLITFNALLSYFLTP--LENIINLQPKLQAARVANNRLNEVY-LVDSEFEKKKKITELE---NLNG- 472 (710)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCH--HHHHHHCCCHHHHHHHHHHHCCEEE-ECCHHHCCCCCCCHHH---CCCC-
T ss_conf 2233432464147899999999875163--4545622513556876441145344-0120100564002201---5776-
Q ss_pred EEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 68884057654667888650699889999989862258848998188888889999998303876767999
Q gi|254780724|r 213 TLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 213 ~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
.+.+-.. + =++|..++-+.+ ..+-++.+-.+.+.|.-|||||||.+-|.+|-.|..+-.+|
T Consensus 473 di~~~~~-----s----y~YG~g~~~L~d-i~L~I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG~I 533 (710)
T TIGR01193 473 DIVVNDV-----S----YSYGYGSNVLSD-ISLTIKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESGEI 533 (710)
T ss_pred CEEEEEE-----E----EECCCCCCCCCC-CEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE
T ss_conf 5467434-----6----644788732026-42365078548997367974899998752035899887736
No 420
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.87 E-value=0.033 Score=34.09 Aligned_cols=44 Identities=25% Similarity=0.195 Sum_probs=34.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEECCHHHCCC
Q ss_conf 5884899818888888999999830-3876767999642131256
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTCEDTAELQLQ 292 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtIED~~El~l~ 292 (483)
.+.+.+|..|||||||.++.+++.. .....|++.+-.+.+|.-+
T Consensus 17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~~~L~~Q 61 (103)
T pfam04851 17 EKKRGLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPRKDLLEQ 61 (103)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 639869995899987999999999998469929999082999999
No 421
>PRK02224 chromosome segregation protein; Provisional
Probab=95.86 E-value=0.0082 Score=38.29 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=14.9
Q ss_pred HHHHCCEEEEEEECCCCCEE
Q ss_conf 97423588999876999878
Q gi|254780724|r 389 ITSSLDVIVQTQRLRDGSRR 408 (483)
Q Consensus 389 ia~avd~iV~~~r~~dG~Rr 408 (483)
+...+|.+|.+.+.+.|+|-
T Consensus 856 l~~~~d~~i~V~K~~~~s~~ 875 (880)
T PRK02224 856 LIAAADHVVQVEKDPTTNRS 875 (880)
T ss_pred HHHHCCEEEEEEECCCCCEE
T ss_conf 99868968999987999817
No 422
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.013 Score=36.96 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 6225884899818888888999999830387676799964
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
-+..+-.+-|.|+.||||||+++.+....+|+.--+.+..
T Consensus 27 ~I~~Gei~giIG~SGaGKSTLlr~i~gL~~ptsG~I~~~G 66 (343)
T PRK11153 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG 66 (343)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 9989989999999998699999999659999963999999
No 423
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.86 E-value=0.014 Score=36.72 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9862258848998188888889999998303876767999
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
.+-+..+....|.||.||||||+|+.+...+.|+.--|-|
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i 67 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67 (263)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 1355078189998898868999999985657898875998
No 424
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.85 E-value=0.012 Score=37.07 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=11.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 6530001899998752059988996
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIIL 331 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiV 331 (483)
+|.|.-|+..++--.+..+--.|.+
T Consensus 287 nGsGKsTL~~~l~Gl~~~~~G~v~~ 311 (501)
T PRK10762 287 MGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred CCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8876889999981876777776999
No 425
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.83 E-value=0.057 Score=32.40 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 84899818888888999999830
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~ 273 (483)
+.|.+.|.+++|||||+|+|++.
T Consensus 4 ~~V~ivG~pN~GKSsL~N~L~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 68999999999999999999589
No 426
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=95.82 E-value=0.0087 Score=38.11 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=69.3
Q ss_pred CCHHHHH--HCCCCCHHHHHHHHH--HHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE--ECCHHHCCCCCCE
Q ss_conf 6678886--506998899999898--6225884899818888888999999830-3876767999--6421312567875
Q gi|254780724|r 224 LTLDHLV--SFGAVTAEGARLLQI--IGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC--EDTAELQLQQPHV 296 (483)
Q Consensus 224 ~~l~~l~--~~g~~~~~~~~~l~~--~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI--ED~~El~l~~~~~ 296 (483)
.+++++. ....++..+..-|.. -++.+.|+++.|++|+|||.+..|+... +....++..+ .|-.+- +..
T Consensus 17 ~tle~~d~~~~~~~~~~~i~~L~~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~-l~~--- 92 (178)
T pfam01695 17 KTLEDFDFRAARGLDRRLIAELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQ-LKR--- 92 (178)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HHH---
T ss_conf 9863368878999899999988559742158768998999987899999999999986985999961679999-998---
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC----CHH-HHHHHHHHHCCCCEEEHHHC-CCCHHHHHHHH
Q ss_conf 677874166665300018999987520599889965758----799-99999998739701020004-78888899999
Q gi|254780724|r 297 VRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR----GPE-VLDLLQAMNTGHDGSMGTIH-ANNARESFGRM 369 (483)
Q Consensus 297 v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR----g~E-a~~~l~A~~TGH~G~ltTlH-a~s~~~ai~RL 369 (483)
... .-+..+.++.. .++|.+|+.|+- +.+ +..+++.++.-+. --+|+= +|-+.+-..++
T Consensus 93 -------~~~----~~~~~~~l~~~--~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye-~~stIiTSN~~~~~W~~~ 157 (178)
T pfam01695 93 -------ARG----DGRLARTLQRL--AKADLLILDDIGYLPLSQEAAHLLFELISDRYE-RRSTILTSNLPFGEWHEV 157 (178)
T ss_pred -------HHH----CCCHHHHHHHH--HCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHH
T ss_conf -------752----67499999996--258978872001656898999999999999975-688687768997899876
No 427
>pfam00350 Dynamin_N Dynamin family.
Probab=95.81 E-value=0.0075 Score=38.56 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH-C-CCCC
Q ss_conf 899818888888999999830-3-8767
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRY-I-DKDE 278 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~-i-~~~~ 278 (483)
|+|.|.++|||||++|||++. + |...
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~ 28 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGP 28 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 9899178898999999997887368899
No 428
>PRK06526 transposase; Provisional
Probab=95.77 E-value=0.015 Score=36.54 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=65.3
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 22588489981888888899999983-03876767999642131256787567787416666530001899998752059
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
++.+.||++.||||+|||.+..||.. .+....++..+--+.-+.- + .. .+..-++...++... +
T Consensus 95 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~-------L--~~----a~~~g~~~~~~~~l~--~ 159 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-------L--AA----AHHAGRLQDELVKLG--R 159 (254)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-------H--HH----HHHCCCHHHHHHHHH--C
T ss_conf 7658878998999986899999999999986996799877999999-------9--99----885580999999851--3
Q ss_pred CCEEEECCCC----CH-HHHHHHHHHHCCCCEEEHH-HCCCCHHHHHHHHH
Q ss_conf 9889965758----79-9999999987397010200-04788888999999
Q gi|254780724|r 326 PERIILGEVR----GP-EVLDLLQAMNTGHDGSMGT-IHANNARESFGRME 370 (483)
Q Consensus 326 PD~IiVGEiR----g~-Ea~~~l~A~~TGH~G~ltT-lHa~s~~~ai~RL~ 370 (483)
+|.+|+.|+- +. ++..+++-++.-|. --|| +-+|-+.+-...+.
T Consensus 160 ~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye-~~S~IiTSn~~~~~W~~~f 209 (254)
T PRK06526 160 IPLLIVDEVGYIPFEAEAANLFFQLVSSRYE-RASLIVTSNKPFGRWGEVF 209 (254)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHC
T ss_conf 6877650213644788999999999999974-5886766589866888864
No 429
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.014 Score=36.67 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=31.1
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCHHH--HHHHHHHHCCCC
Q ss_conf 7881688840576546678886506998899999898622-58848998188888889--999998303876
Q gi|254780724|r 209 LDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGR-IRCNVLISGGTGSGKTT--LLNCLTRYIDKD 277 (483)
Q Consensus 209 ~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~-~~~nilVsG~TGSGKTT--~L~al~~~i~~~ 277 (483)
.++.++.|++ ...+.+- -.+|.--..+...+.-+.+ ..+.|.+-|-.=+.++. .++.=+.++|.+
T Consensus 279 l~~vsf~v~~--GEi~gl~--G~nGsGKsTL~~~l~Gl~~~~~G~I~~~G~~i~~~~~~~~~~~gi~~v~~~ 346 (510)
T PRK09700 279 VRDISFSVCR--GEILGFA--GLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred EEEEEEEECC--CCEEEEE--CCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEEEEE
T ss_conf 5433578748--8189997--688862889999981988888618999999999899899997086775310
No 430
>KOG0924 consensus
Probab=95.75 E-value=0.065 Score=31.98 Aligned_cols=46 Identities=35% Similarity=0.363 Sum_probs=30.2
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHH-HHHHHCCCCCCEEEEECCH
Q ss_conf 989862258848998188888889999-9983038767679996421
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLN-CLTRYIDKDERIVTCEDTA 287 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~-al~~~i~~~~rivtIED~~ 287 (483)
-|-..++....|+|.|.|||||||.|. .|...=-.+..+|-+--|+
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPR 409 (1042)
T KOG0924 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPR 409 (1042)
T ss_pred HHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCH
T ss_conf 99999863857999935889850166799986224558715435722
No 431
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.75 E-value=0.016 Score=36.29 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC--CCEEEE--ECCHHHCCCC--CCEEEEEEECCCCCCCCCCHHHH
Q ss_conf 89862258848998188888889999998303876--767999--6421312567--87567787416666530001899
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD--ERIVTC--EDTAELQLQQ--PHVVRLETRPPNIEGEGEITMRD 316 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~--~rivtI--ED~~El~l~~--~~~v~~~~~~~~~e~~~~~t~~~ 316 (483)
+.+-|+.+-...|=||=||||+||.++|++.-... .=-|+. +|--||...- ..-+.+-.+.+ +.-.+||..+
T Consensus 19 vnL~v~~GE~HAiMGPNGsGKSTL~~~iaGhp~y~vt~G~I~f~G~Dll~l~~~ERAR~GlFLaFQ~P--~EIPGV~~~~ 96 (248)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPKYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYP--EEIPGVSNLE 96 (248)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEEECCEECCCCCHHHHHCCCCEECCCCC--CCCCCCCHHH
T ss_conf 67621685179986889984788877761799337842089877652001896556405651015888--5568857788
Q ss_pred HHHHHH
Q ss_conf 998752
Q gi|254780724|r 317 LVKNCL 322 (483)
Q Consensus 317 ll~~aL 322 (483)
.||+|+
T Consensus 97 FlR~A~ 102 (248)
T TIGR01978 97 FLRSAL 102 (248)
T ss_pred HHHHHH
T ss_conf 999999
No 432
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=95.73 E-value=0.0072 Score=38.67 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 884899818888888999999830
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
.-||+++|+-|+|||||+|.|++-
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 638999627887555788765676
No 433
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=95.72 E-value=0.0087 Score=38.11 Aligned_cols=171 Identities=21% Similarity=0.269 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE---EEECCHHHC--------CCCCCEEEEEEEC
Q ss_conf 98899999898622588489981888888899999983038767679---996421312--------5678756778741
Q gi|254780724|r 235 VTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIV---TCEDTAELQ--------LQQPHVVRLETRP 303 (483)
Q Consensus 235 ~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~riv---tIED~~El~--------l~~~~~v~~~~~~ 303 (483)
.-..+.+=+..-|.++..+-+-|-|||||+|+|.||+.....+--|- +==|++-|+ +||+-.+---|-.
T Consensus 1271 ~G~avL~dlSFsv~~GQ~VGlLGRTGsGKSTLLSAlLRL~~T~GEI~IDGvSW~SvtLQ~WRKAFGViPQKvFi~sGTFR 1350 (1534)
T TIGR01271 1271 AGRAVLQDLSFSVEAGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQKWRKAFGVIPQKVFIFSGTFR 1350 (1534)
T ss_pred CCHHHHHHCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCEEECCCCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 20555641341443883577530268767899999999607798167623350521220034441315634788315511
Q ss_pred CCCCCCC--------CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 6666530--------00189999875205998899657587999999999873970102000478888899999975530
Q gi|254780724|r 304 PNIEGEG--------EITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAM 375 (483)
Q Consensus 304 ~~~e~~~--------~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~ 375 (483)
.|.++-. .++-.=.||+..-|-||-+=.-=+-|+=. ...||..-||= |+..+++=.-+.+.
T Consensus 1351 ~NLDPy~~~SD~E~WkVaeEVGLkSvIEQFPdKLdF~L~DGGyv------LS~GHKQLMCL-----ARSiLSKAkILLLD 1419 (1534)
T TIGR01271 1351 KNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYV------LSNGHKQLMCL-----ARSILSKAKILLLD 1419 (1534)
T ss_pred CCCCHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCEE------EECCHHHHHHH-----HHHHHHHHHHHHCC
T ss_conf 36881342260356666543154311000888412488628678------31641689999-----98888653322214
Q ss_pred CC-CC---CCHHHHHHHHHHHCCE--EEEEEECCCCCEEEEEEEEEEEE---ECCE
Q ss_conf 46-79---9989999999742358--89998769998789999999841---4988
Q gi|254780724|r 376 GG-FT---LPSQMVREIITSSLDV--IVQTQRLRDGSRRITNICEIVGM---EGNV 422 (483)
Q Consensus 376 ~~-~~---~~~~~~~~~ia~avd~--iV~~~r~~dG~Rrv~~I~Ev~g~---e~~~ 422 (483)
.| .. ++...+|+.+-.++-= ||-. .+||..+-||--+ |+..
T Consensus 1420 EPsA~LDPvT~Qi~RkTLK~~Fs~CTVILs------EHRvEalLECQ~FL~IE~~~ 1469 (1534)
T TIGR01271 1420 EPSAHLDPVTLQIIRKTLKQSFSNCTVILS------EHRVEALLECQQFLVIEGSS 1469 (1534)
T ss_pred CCCHHCCHHHHHHHHHHHHHHHCCCEEEEE------CCCHHHHHHHCCEEEEECCC
T ss_conf 871010316899999998532215748751------12222466403101442564
No 434
>PRK10416 cell division protein FtsY; Provisional
Probab=95.71 E-value=0.048 Score=32.90 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHH-----HCCC--CCEEEECCCCCCHHHHHHHHHHHCC-CCCCEE-EEECCHH------HCCC-CCCEE
Q ss_conf 9988999998986-----2258--8489981888888899999983038-767679-9964213------1256-78756
Q gi|254780724|r 234 AVTAEGARLLQII-----GRIR--CNVLISGGTGSGKTTLLNCLTRYID-KDERIV-TCEDTAE------LQLQ-QPHVV 297 (483)
Q Consensus 234 ~~~~~~~~~l~~~-----v~~~--~nilVsG~TGSGKTT~L~al~~~i~-~~~riv-tIED~~E------l~l~-~~~~v 297 (483)
.+..++..+|.-. +..+ ..||++|-.||||||+..-|+.+.. ...+++ ..-|++- |... ..+.+
T Consensus 272 ~l~~~~~~il~~~~~~l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v 351 (499)
T PRK10416 272 LLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNI 351 (499)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999873104466568999879999747878789899999999997799537884066756899999998424573
Q ss_pred EEEEECCCCCCCCCCH-HHHHHHHHHHCCCCEEEECCC-C--CH-HHHH----HHHHHH-----CCCCEEEHHHCCCCHH
Q ss_conf 7787416666530001-899998752059988996575-8--79-9999----999987-----3970102000478888
Q gi|254780724|r 298 RLETRPPNIEGEGEIT-MRDLVKNCLRMRPERIILGEV-R--GP-EVLD----LLQAMN-----TGHDGSMGTIHANNAR 363 (483)
Q Consensus 298 ~~~~~~~~~e~~~~~t-~~~ll~~aLR~~PD~IiVGEi-R--g~-Ea~~----~l~A~~-----TGH~G~ltTlHa~s~~ 363 (483)
....... |....+ ..+++..+...+-|++||.-- | .. ..+. +.+.++ .=|- +|-++-|..-.
T Consensus 352 ~vi~~~~---g~Dpa~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e-~lLVlDa~tGQ 427 (499)
T PRK10416 352 PVIAQHT---GADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE-VMLTIDASTGQ 427 (499)
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCH
T ss_conf 6983689---9997999999999999729998998577643260999999999999997237899974-89997787677
Q ss_pred HHHHHHHH
Q ss_conf 89999997
Q gi|254780724|r 364 ESFGRMEA 371 (483)
Q Consensus 364 ~ai~RL~~ 371 (483)
+++..-..
T Consensus 428 na~~qak~ 435 (499)
T PRK10416 428 NAVSQAKL 435 (499)
T ss_pred HHHHHHHH
T ss_conf 89999999
No 435
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.015 Score=36.36 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=29.4
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 22588489981888888899999983038-7676799
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYID-KDERIVT 282 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~-~~~rivt 282 (483)
++.+..+-|.|..||||||+..|++..+| ++-++..
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~ 64 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG 64 (316)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 7589689998389788999999998466888974861
No 436
>KOG0922 consensus
Probab=95.70 E-value=0.1 Score=30.53 Aligned_cols=13 Identities=54% Similarity=0.943 Sum_probs=4.1
Q ss_pred EEEECCCCCCHHH
Q ss_conf 8998188888889
Q gi|254780724|r 253 VLISGGTGSGKTT 265 (483)
Q Consensus 253 ilVsG~TGSGKTT 265 (483)
++|.|.|||||||
T Consensus 69 lIviGeTGsGKST 81 (674)
T KOG0922 69 LIVIGETGSGKST 81 (674)
T ss_pred EEEECCCCCCCCC
T ss_conf 9998489898533
No 437
>PRK09183 transposase/IS protein; Provisional
Probab=95.69 E-value=0.016 Score=36.27 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=59.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 22588489981888888899999983-03876767999642131256787567787416666530001899998752059
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
++.+.||++.||||.|||.+..||.. .+....++.-+- ..+|.-. + ..+..++ ++...++.. =..
T Consensus 98 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~-~~~L~~~------L--~~a~~~~----~~~~~l~r~-l~~ 163 (258)
T PRK09183 98 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ------L--STAQRQG----RYKTTLQRG-VMA 163 (258)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-HHHHHHH------H--HHHHHCC----CHHHHHHHH-HCC
T ss_conf 655886799899998689999999999998799399978-9999999------9--9998768----599999987-434
Q ss_pred CCEEEECCCC-----CHHHHHHHHHHHCCCCEEEHHH-CCCCHHHHHHH
Q ss_conf 9889965758-----7999999999873970102000-47888889999
Q gi|254780724|r 326 PERIILGEVR-----GPEVLDLLQAMNTGHDGSMGTI-HANNARESFGR 368 (483)
Q Consensus 326 PD~IiVGEiR-----g~Ea~~~l~A~~TGH~G~ltTl-Ha~s~~~ai~R 368 (483)
||.+|+.|+- ..++..+++-++--+. --||+ -+|=+.+-...
T Consensus 164 ~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye-~~S~IiTSn~~~~~W~~ 211 (258)
T PRK09183 164 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYE-KGAMILTSNLPFGQWDQ 211 (258)
T ss_pred CCEEEEHHHHCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHH
T ss_conf 6514431331546888899999999999857-67789988999789856
No 438
>PRK12377 putative replication protein; Provisional
Probab=95.68 E-value=0.03 Score=34.33 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=55.4
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 98986225884899818888888999999830-38767679996421312567875677874166665300018999987
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
|..-.+.+..|++++||+|.|||.+..|+... +....++ ..=...+|...-. ....+++ +...+++.
T Consensus 93 ~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sV-lF~t~~dLv~~L~--------~a~~~g~---~~~k~l~~ 160 (248)
T PRK12377 93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLH--------ESYDNGQ---SGEKFLQE 160 (248)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE-EEEEHHHHHHHHH--------HHHHCCC---CHHHHHHH
T ss_conf 9998731886089989999878899999999999879969-9988999999999--------9998485---09999999
Q ss_pred HHHCCCCEEEECCCC---CH--HHHHHHHHHHC
Q ss_conf 520599889965758---79--99999999873
Q gi|254780724|r 321 CLRMRPERIILGEVR---GP--EVLDLLQAMNT 348 (483)
Q Consensus 321 aLR~~PD~IiVGEiR---g~--Ea~~~l~A~~T 348 (483)
.. ++|.+|+.|+- .. |...++|-...
T Consensus 161 l~--~~dLLIIDElG~~~~s~~~~~llfqlI~~ 191 (248)
T PRK12377 161 LC--KVDLLVLDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred HH--CCCEEEEHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 73--38989860005788986799999999999
No 439
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.66 E-value=0.019 Score=35.80 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=58.3
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEC--------CCCEEEEECCEEEECCCCCCCHHHH-HH
Q ss_conf 41877896789999999999885656335885883321799856--------9918998278389717620798999-99
Q gi|254780724|r 100 VKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNG--------SNKVFIEVNGKTVETGINFRDNEQL-LS 170 (483)
Q Consensus 100 ~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing--------~~~I~ve~~G~~~~~~~~f~~~~~l-~~ 170 (483)
+--..++......+.+.+.+-. .+..++=|.|.- .+.|.|-++|+...... .+++ ..
T Consensus 194 EPTa~LD~~~~~~l~~~l~~l~----------~~~g~tii~isH~l~~~~~~~Drv~vl~~G~iv~~g~----~~ev~~~ 259 (520)
T TIGR03269 194 EPTGTLDPQTAKLVHNALEEAV----------KASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT----PDEVVAV 259 (520)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH----------HHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEEC----HHHHHHH
T ss_conf 7633579999999999999999----------9839659997486999998699999998998999938----8999999
Q ss_pred HHHHHHH-HHCCCCCCCCCEEEEEECCCCEEEEECCC-CCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 9999999-80981243387787982376203453155-357881688840576546678886506998899999898622
Q gi|254780724|r 171 VCQRIVN-QVGRRVDESSPICDARLLDGSRVNVIIPP-LALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGR 248 (483)
Q Consensus 171 ~i~rla~-~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p-~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~ 248 (483)
+...+.. ...+......|++..+--...-....... .+.++.++++++ ...+.+- -.+|.--..++..+.-+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~g~~~al~~vs~~v~~--GEi~gi~--G~nGsGKsTL~k~l~Gl~~ 335 (520)
T TIGR03269 260 FMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKE--GEIFGIV--GTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEECEEEEECC--CCEEEEE--CCCCCCHHHHHHHHHCCCC
T ss_conf 98646434555656789963899776666452678862465120689728--9689998--7888878999999948878
Q ss_pred -CCCCEEEEC
Q ss_conf -588489981
Q gi|254780724|r 249 -IRCNVLISG 257 (483)
Q Consensus 249 -~~~nilVsG 257 (483)
..+.|.+.+
T Consensus 336 p~~G~V~~~~ 345 (520)
T TIGR03269 336 PTSGEVNVRV 345 (520)
T ss_pred CCCCEEEEEC
T ss_conf 9874799973
No 440
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.011 Score=37.32 Aligned_cols=93 Identities=23% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC-C-C--CE--EEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 84899818888888999999830387-6-7--67--99964213125678756778741666653000189999875205
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDK-D-E--RI--VTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~-~-~--ri--vtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
.+|+|-|++||||||+...|+...+- + . .+ --++...|+.......+. . .+--..--...+++..|.+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~----~--g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYID----K--GELVPDEIVNGLVKERLDE 74 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCCHHHHHHHHHHH----C--CCCCCHHHHHHHHHHHHHH
T ss_conf 979998999998899999999976997855220111100323689999999987----5--8950417699799999975
Q ss_pred C--C-CEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 9--9-88996575879999999998739
Q gi|254780724|r 325 R--P-ERIILGEVRGPEVLDLLQAMNTG 349 (483)
Q Consensus 325 ~--P-D~IiVGEiRg~Ea~~~l~A~~TG 349 (483)
. . -+|+.|==|...-+.+++-+...
T Consensus 75 ~d~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 75 ADCKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 0657729998998369999999999986
No 441
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.66 E-value=0.056 Score=32.45 Aligned_cols=121 Identities=18% Similarity=0.268 Sum_probs=57.3
Q ss_pred CCCCCEEEEEC--------CCCEEEEECCEEEECCCC---CCCHHHHHHHHHHHHHHH----CCCCCC--------CCCE
Q ss_conf 83321799856--------991899827838971762---079899999999999980----981243--------3877
Q gi|254780724|r 133 RDDIADIMVNG--------SNKVFIEVNGKTVETGIN---FRDNEQLLSVCQRIVNQV----GRRVDE--------SSPI 189 (483)
Q Consensus 133 D~~VsdI~ing--------~~~I~ve~~G~~~~~~~~---f~~~~~l~~~i~rla~~~----g~~i~~--------~~P~ 189 (483)
...++=|.|.- .|.|.|-++|+....... |.++.| .+-+.+.+.. ...... ..|.
T Consensus 203 e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h--pYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~l 280 (539)
T COG1123 203 ELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH--PYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPL 280 (539)
T ss_pred HCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC--CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 7094899986899999975376999988788874689999726688--65688884188766544344333455556760
Q ss_pred EEEE-----ECC--CCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCC-CCCEEEECCC
Q ss_conf 8798-----237--62034531553578816888405765466788865069988999998986225-8848998188
Q gi|254780724|r 190 CDAR-----LLD--GSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRI-RCNVLISGGT 259 (483)
Q Consensus 190 ~d~~-----lpd--g~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~-~~nilVsG~T 259 (483)
+..+ +.- +.......+..+.++.++.+++ ...+.+ .-++|.--.-++..+.-+..+ .+.|.+.|..
T Consensus 281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~--GE~lgl--VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE--GETLGL--VGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEE--ECCCCCCHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 576420446314655444556640123012457638--878999--88999998999999948778888449992765
No 442
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.62 E-value=0.01 Score=37.59 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9862258848998188888889999998303876767999642
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
...+..+-.+-|.||.||||+|+||-+..|.-|..-.+.|-+.
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~ 61 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV 61 (231)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCE
T ss_conf 8760678579997788865788999987424778745898572
No 443
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=95.62 E-value=0.012 Score=37.00 Aligned_cols=76 Identities=26% Similarity=0.349 Sum_probs=51.7
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCEEEEC
Q ss_conf 998188888889999998303876767999642131256787567787416666530001899998752059-9889965
Q gi|254780724|r 254 LISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMR-PERIILG 332 (483)
Q Consensus 254 lVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~-PD~IiVG 332 (483)
=+-|..||||||||--++..+..+.++.+||--. +|-.|+=| ||.. --.+
T Consensus 38 NfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~------------------------~t~~DA~R--lR~~G~~a~--- 88 (225)
T TIGR00073 38 NFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDV------------------------QTKNDADR--LRKYGVPAI--- 88 (225)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCH------------------------HHHHHHHH--HHHCCCEEE---
T ss_conf 8025886115899999999845789789997553------------------------22556999--986498688---
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHH
Q ss_conf 75879999999998739701020004788888999999755
Q gi|254780724|r 333 EVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMI 373 (483)
Q Consensus 333 EiRg~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~ 373 (483)
+.|||-. |=|-|.=..+++.+|..+-
T Consensus 89 ------------~~nTGk~---CHLdA~mv~G~~~~L~~~~ 114 (225)
T TIGR00073 89 ------------QINTGKE---CHLDAHMVAGAIHALKDLP 114 (225)
T ss_pred ------------EECCCCC---CCCHHHHHHHHHHHHHCCC
T ss_conf ------------6368864---4401667865875542168
No 444
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.62 E-value=0.035 Score=33.91 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=54.1
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 86506998899999898622588489981888888899999983038767679996421312567875677874166665
Q gi|254780724|r 229 LVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEG 308 (483)
Q Consensus 229 l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~ 308 (483)
+.+.| +.+++..++..+-..+..+++| .|=.++ .+..+...+..+-..+.++.+... ..+..+......+.+
T Consensus 161 mld~g-F~~~i~~I~~~~~~~~Q~llfS-ATl~~~--~v~~l~~~~l~~p~~i~~~~~~~~---~~~i~q~~~~~~~~~- 232 (417)
T PRK11192 161 MLDMG-FAQDVEHIAAETRWRKQTLLFS-ATLEGD--GVQDFAERLLNDPVEVDAEPSRRE---RKKIHQWYYRADDLE- 232 (417)
T ss_pred CCCCC-CHHHHHHHHHHCCCCCEEEEEE-EECCHH--HHHHHHHHHCCCCEEEEECCCCCC---CCCEEEEEEEECCHH-
T ss_conf 11135-4789999986476772389997-326847--899999983679889996467666---674369999937689-
Q ss_pred CCCCHHHHHHHHHHHCC-CC--EEEECCCCCHHH-HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30001899998752059-98--899657587999-999999873970102000478888899999975530
Q gi|254780724|r 309 EGEITMRDLVKNCLRMR-PE--RIILGEVRGPEV-LDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAM 375 (483)
Q Consensus 309 ~~~~t~~~ll~~aLR~~-PD--~IiVGEiRg~Ea-~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~ 375 (483)
.-..++...|... +. .|.+......+. ...++. .|.. ...+|++-+.+.-.+.......
T Consensus 233 ----~k~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~--~g~~--~~~lhg~l~q~~R~~~l~~F~~ 295 (417)
T PRK11192 233 ----HKTALLCHLLKQEEVTRSIVFVRTRERVHELAGWLRK--AGIN--CCYLEGEMVQKKRNEAIKRLTD 295 (417)
T ss_pred ----HHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHC--CCCC--EEEECCCCCHHHHHHHHHHHHC
T ss_conf ----9999999998534766521531124667689886531--4883--5754001799999999999976
No 445
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=95.61 E-value=0.012 Score=37.00 Aligned_cols=151 Identities=25% Similarity=0.333 Sum_probs=88.5
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH-----CCCCCCEE-E--------EEEECC
Q ss_conf 999989862258848998188888889999998303876767999642131-----25678756-7--------787416
Q gi|254780724|r 239 GARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL-----QLQQPHVV-R--------LETRPP 304 (483)
Q Consensus 239 ~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El-----~l~~~~~v-~--------~~~~~~ 304 (483)
-..-|..+.-++=|+|+.||.|||||=+..-+-+.+|+=..-=.||...=. ...+.+|. | --+.++
T Consensus 202 akRAleIAaAGGHNlll~GPPGsGKTmla~r~~giLP~L~~~EalE~~~v~S~~~~l~~~~~~~rQRPFR~PHHsAS~~~ 281 (505)
T TIGR00368 202 AKRALEIAAAGGHNLLLLGPPGSGKTMLASRLQGILPPLTNEEALETARVLSLVGKLIDRKQWKRQRPFRSPHHSASKPA 281 (505)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCC
T ss_conf 10267775313564376782496268999875105786451266667888888875765230110686778650025666
Q ss_pred CCCCC-----CCCHH--------------HHHHHHHHHCCC--CEEEECCCCCHHH-----HHHHHHHH---CCCCEEEH
Q ss_conf 66653-----00018--------------999987520599--8899657587999-----99999987---39701020
Q gi|254780724|r 305 NIEGE-----GEITM--------------RDLVKNCLRMRP--ERIILGEVRGPEV-----LDLLQAMN---TGHDGSMG 355 (483)
Q Consensus 305 ~~e~~-----~~~t~--------------~~ll~~aLR~~P--D~IiVGEiRg~Ea-----~~~l~A~~---TGH~G~lt 355 (483)
-+.|. |+||+ ..-+=.+||+=- --|.+.-.+-.=. |.++-||| |||.|.=-
T Consensus 282 lvGGG~~P~PGEiSLAhnGvLFLDEl~EF~r~vL~~LR~PlEdg~i~iSRa~~ki~kyPA~FqL~aAmNpcPcG~~~~~~ 361 (505)
T TIGR00368 282 LVGGGSIPKPGEISLAHNGVLFLDELPEFKRKVLDALREPLEDGSISISRAKAKIFKYPARFQLVAAMNPCPCGHYGGKI 361 (505)
T ss_pred CCCCCCCCCCCCEEHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 40587522285120200541043222044678998717874267068863220100087245567561788776777874
Q ss_pred HHCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 00478-8888999999755304679998999999974235889998769
Q gi|254780724|r 356 TIHAN-NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLR 403 (483)
Q Consensus 356 TlHa~-s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~ 403 (483)
| |.. |+.+...-+--+ +|+-|+ =||+=|-+.+.+
T Consensus 362 ~-~c~cSp~q~~~Yl~kL---sgp~LD----------RiDl~v~v~~~~ 396 (505)
T TIGR00368 362 T-HCRCSPQQISRYLNKL---SGPFLD----------RIDLSVEVPLLP 396 (505)
T ss_pred C-CCCCCHHHHHHHHHHC---CCHHHC----------HHCCEECCCCCC
T ss_conf 4-4658978999998742---711200----------011400137888
No 446
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.017 Score=35.98 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECC-CCCCCHHHHHHHHHHHHH
Q ss_conf 7418778967899999999998856563358858833217998569918998278389717-620798999999999999
Q gi|254780724|r 99 SVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETG-INFRDNEQLLSVCQRIVN 177 (483)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~-~~f~~~~~l~~~i~rla~ 177 (483)
++--..++....+.+.+ +++++-..|. .-++-.-++.++. .=.+.|.|-++|+..... ..-.+.+++ +..
T Consensus 168 DEPt~~LD~~~~~~l~~-~l~~l~~~g~-til~isH~l~~v~-~~aDrv~vl~~G~iv~~~~~~~~~~~~~---~~~--- 238 (513)
T PRK13549 168 DEPTASLTESETAILLD-IIRDLKQHGI-ACIYISHKLNEVK-AISDTICVIRDGRHIGTRPAAGMSEDDI---ITM--- 238 (513)
T ss_pred CCCCCCCCHHHHHHHHH-HHHHHHHCCC-EEEEEECCHHHHH-CCCCEEEECCCCCEEEECCHHHCCHHHH---HHH---
T ss_conf 66757888577799999-9999875596-7999945714303-0098740448985885355375799999---987---
Q ss_pred HHCCCCCCC---------CCEEEEEECCCCEEEEECCC----CCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 809812433---------87787982376203453155----35788168884057654667888650699889999989
Q gi|254780724|r 178 QVGRRVDES---------SPICDARLLDGSRVNVIIPP----LALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQ 244 (483)
Q Consensus 178 ~~g~~i~~~---------~P~~d~~lpdg~Ri~~~~~p----~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~ 244 (483)
..|+.+... .+.+..+ + +....+. ...++.+++|++ ...+.+. -.+|.--..++..+.
T Consensus 239 ~~g~~~~~~~p~~~~~~~~~~l~~~--~---l~~~~~~~~~~~~l~~vsf~v~~--GEi~gi~--G~nGsGKsTLl~~L~ 309 (513)
T PRK13549 239 MVGRELTALYPREPHDIGDEILRVR--N---LTAWDPVNPHIKRVDDVSFSLRR--GEILGIA--GLVGAGRTELVQCLF 309 (513)
T ss_pred HHCHHHHHHCCCCCCCCCCCEEEEE--E---EEEECCCCCCCEEEECCEEEECC--CCEEEEE--CCCCCCHHHHHHHHH
T ss_conf 4040135407777788787158996--4---46642688874365233578868--8489974--798865899999983
Q ss_pred HHHC--CCCCEEEECCCCCCHHH--HHHHHHHHCCCC
Q ss_conf 8622--58848998188888889--999998303876
Q gi|254780724|r 245 IIGR--IRCNVLISGGTGSGKTT--LLNCLTRYIDKD 277 (483)
Q Consensus 245 ~~v~--~~~nilVsG~TGSGKTT--~L~al~~~i~~~ 277 (483)
-+.+ ..+.|.+.|..-+-++. .++.-..++|.+
T Consensus 310 Gl~~~~~~G~i~~~G~~i~~~~~~~~~~~~i~~v~qd 346 (513)
T PRK13549 310 GAYPGRWEGEIFIDGKPVKIRNPQQAIRQGIAMVPED 346 (513)
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHCCCCCCCC
T ss_conf 8988897439999988768689999997177634510
No 447
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=95.59 E-value=0.0067 Score=38.89 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=30.1
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8986225884899818888888999999830387
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
+.+-++++..+-|+|+|||||+|++.+|..+.+.
T Consensus 1188 lsf~I~~GqkVaiVGrSGsGKSTii~lL~Rfydi 1221 (1467)
T PTZ00265 1188 LSFSCDSKKTTAIVGETGSGKSTFMNLLLRFYDL 1221 (1467)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 4599779988999899998399999999977632
No 448
>PHA00520 packaging NTPase P4
Probab=95.54 E-value=0.033 Score=34.07 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=58.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 58848998188888889999998303876767999--6421312567875677874166665300018999987520599
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRP 326 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~P 326 (483)
.-+..++.|+||||||-++|++...+-....-+|| -+|.|-.-..+..+. +. .++-.-.+-..+-+.-
T Consensus 112 ~SG~~vv~G~t~sGKT~~lna~~~~~~~k~~~v~IRwGEp~e~yde~e~~~~---------~s-dL~~~l~v~l~a~~~~ 181 (326)
T PHA00520 112 ASGMVIVTGGTGSGKTPLLNALGEPLGGKDKDVTVRWGEPLEGYDEAERPLY---------GS-DLNVFLAVILRAMLQH 181 (326)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC---------CC-CHHHHHHHHHHHHHCC
T ss_conf 0424999647888867556654210258998748983685433462013321---------04-4999999999986457
Q ss_pred CEEEECCCCCHHHHHHHH-HHHCCCCEEEHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 889965758799999999-9873970102000478888899999975530
Q gi|254780724|r 327 ERIILGEVRGPEVLDLLQ-AMNTGHDGSMGTIHANNARESFGRMEAMIAM 375 (483)
Q Consensus 327 D~IiVGEiRg~Ea~~~l~-A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~ 375 (483)
++|+|.-+|.-= +. .-|.+- |.++ --+.++++-|-+|+..
T Consensus 182 ~vvvvDSlR~v~----~~l~Gnat~-GGIS----r~~y~~LTdl~n~aas 222 (326)
T PHA00520 182 RVVVVDSLRNVI----FALGGNATS-GGIS----RGAYDLLTDIGNMAAS 222 (326)
T ss_pred CEEEEECHHHHH----HHCCCCCCC-CCHH----HHHHHHHHHHHHHHHH
T ss_conf 179952146666----441378787-7446----8899999888888876
No 449
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=95.53 E-value=0.019 Score=35.68 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEEECCHHHC
Q ss_conf 8848998188888889999998-3038767679996421312
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLT-RYIDKDERIVTCEDTAELQ 290 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~-~~i~~~~rivtIED~~El~ 290 (483)
.-|+.|+|++|||||-|++.|+ ++.....+++.|-.-..|.
T Consensus 474 N~N~~I~g~SGsGKSf~~q~l~~~~~~~G~~V~IID~G~SY~ 515 (864)
T PRK13721 474 NYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYK 515 (864)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 700699828998689999999999985799799996997899
No 450
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=95.51 E-value=0.048 Score=32.94 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHCCCCC--HHHHHHHHHHHCCCC---CEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE-ECCH
Q ss_conf 886506998--899999898622588---4899818888888999999830-3876767999-6421
Q gi|254780724|r 228 HLVSFGAVT--AEGARLLQIIGRIRC---NVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC-EDTA 287 (483)
Q Consensus 228 ~l~~~g~~~--~~~~~~l~~~v~~~~---nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI-ED~~ 287 (483)
.+++++... .....++..+....+ -|-|+|++|+||+||+.+|..+ .....++.++ =||.
T Consensus 22 tlvEs~~~~~~~~~~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPs 88 (325)
T PRK09435 22 TLVESTRPDHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 88 (325)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 9986799124899999999863017982599742799986889999999999967985899997899
No 451
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.2 Score=28.57 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=10.2
Q ss_pred CCCHHHHHH-HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 788888999-9997553046799989999999
Q gi|254780724|r 359 ANNARESFG-RMEAMIAMGGFTLPSQMVREII 389 (483)
Q Consensus 359 a~s~~~ai~-RL~~m~~~~~~~~~~~~~~~~i 389 (483)
++++.-++. -+..|+.+. ...|.+.+..++
T Consensus 341 s~~Pk~~lEm~llRml~l~-~~~s~~~l~~~~ 371 (560)
T PRK06647 341 SVNPRYELEINFIKILRLK-DYVPNHVLIKQI 371 (560)
T ss_pred CCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH
T ss_conf 8993088999999998467-899817899998
No 452
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.021 Score=35.39 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 41877896789999999999885656335885883321799856991899827838971762-07989999999999998
Q gi|254780724|r 100 VKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGIN-FRDNEQLLSVCQRIVNQ 178 (483)
Q Consensus 100 ~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~-f~~~~~l~~~i~rla~~ 178 (483)
+--..++..+.+.+.+ +++++-..| ..-++-..+++++. .=.++|.|-++|+...+... -.+.+.+ +.. .
T Consensus 160 EPt~~LD~~~~~~l~~-~l~~l~~~g-~til~itH~l~~v~-~~~Drv~vm~~G~iv~~~~~~~~~~~~~---~~~---~ 230 (491)
T PRK10982 160 EPTSSLTEKEVNHLFT-IIRKLKERG-CGIVYISHKMEEIF-QLCDEITILRDGQWIATEPLAGLTMDQI---IAM---M 230 (491)
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHHCC-CEEEEECCCHHHHH-HCCCEEEECCCCEEEEECCHHHCCHHHH---HHH---H
T ss_conf 8734558788899988-888877428-53678624367442-1586789756974985466111899999---976---5
Q ss_pred HCCCCCCCCCEEEEEECCCC-----EEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCC-CCC
Q ss_conf 09812433877879823762-----034531553578816888405765466788865069988999998986225-884
Q gi|254780724|r 179 VGRRVDESSPICDARLLDGS-----RVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRI-RCN 252 (483)
Q Consensus 179 ~g~~i~~~~P~~d~~lpdg~-----Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~-~~n 252 (483)
.|+.++...|.-. ..|... .+..... .+.++.++.|++ ...+.+. -.+|.--..++..+.-+.++ .+.
T Consensus 231 ~g~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~-~~l~~vsf~v~~--GEivgl~--G~nGsGKsTL~~~l~Gl~~~~~G~ 304 (491)
T PRK10982 231 VGRSLTQRFPDKE-NKPGEVILEVRNLTSLRQ-PSIRDVSFDLHK--GEILGIA--GLVGAKRTDIVETLFGIREKSAGT 304 (491)
T ss_pred HCCCHHHHCCCCC-CCCCCEEEEEECCCCCCC-CCEEEEEEEEEC--CCEEEEE--CCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 0622243178645-798761799952323788-742026799968--9689977--899997889999981986787777
Q ss_pred EEEECCCCCCHHHH--HHHHHHHCCCCCC
Q ss_conf 89981888888899--9999830387676
Q gi|254780724|r 253 VLISGGTGSGKTTL--LNCLTRYIDKDER 279 (483)
Q Consensus 253 ilVsG~TGSGKTT~--L~al~~~i~~~~r 279 (483)
|.+-|..-..++.. ++.-..+++.+.+
T Consensus 305 I~~~G~~~~~~~~~~~~~~~~~~v~~~r~ 333 (491)
T PRK10982 305 ITLHGKKINNHNANEAINHGFALVTEERR 333 (491)
T ss_pred EEECCEECCCCCHHHHHHCCCEEEEHHHH
T ss_conf 99999999878989998626525203332
No 453
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.51 E-value=0.015 Score=36.37 Aligned_cols=33 Identities=33% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 848998188888889999998303876767999
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC 283 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI 283 (483)
.-|+|.|+-|+||||+++++...........|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~ 38 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI 38 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCE
T ss_conf 799999999998899999996476765567614
No 454
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.49 E-value=0.061 Score=32.20 Aligned_cols=152 Identities=16% Similarity=0.094 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC------------------------CCCCEEEEECCHH
Q ss_conf 6998899999898622588489981888888899999983038------------------------7676799964213
Q gi|254780724|r 233 GAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYID------------------------KDERIVTCEDTAE 288 (483)
Q Consensus 233 g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~------------------------~~~rivtIED~~E 288 (483)
+.........++.+++.++..||-=-|-|+--.+.+.|-...+ .+-|.++.-.+-|
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE 315 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE 315 (814)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 62467899999999961685899972727899999999872687556531666577899999998668862999806422
Q ss_pred HCCC--CCCEEEEEEECCCCCCCCCCHHHHHHHHH--HHCCCCEEEECCCCCH--HHHHHHHHHHCCCCEEEHHHCCCCH
Q ss_conf 1256--78756778741666653000189999875--2059988996575879--9999999987397010200047888
Q gi|254780724|r 289 LQLQ--QPHVVRLETRPPNIEGEGEITMRDLVKNC--LRMRPERIILGEVRGP--EVLDLLQAMNTGHDGSMGTIHANNA 362 (483)
Q Consensus 289 l~l~--~~~~v~~~~~~~~~e~~~~~t~~~ll~~a--LR~~PD~IiVGEiRg~--Ea~~~l~A~~TGH~G~ltTlHa~s~ 362 (483)
|.++ +.+-|-....|..+. --.+..=|+- +..-+..++++.=|+. |+..+.+++.-|+.- -..+|-|.-
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~----r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le-~~~i~~~~L 390 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVN----RFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLE-RIKIPKNPL 390 (814)
T ss_pred HCCCCCCCEEEEEECCCHHHH----HHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCH
T ss_conf 050247742999817938888----886850314665688642799816799999999999999718766-677887636
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 88999999755304679998999999974
Q gi|254780724|r 363 RESFGRMEAMIAMGGFTLPSQMVREIITS 391 (483)
Q Consensus 363 ~~ai~RL~~m~~~~~~~~~~~~~~~~ia~ 391 (483)
.-....+..|+.+. .+..+.+.+.+.+
T Consensus 391 DVLaq~ivg~~~~~--~~~~~~~y~~vrr 417 (814)
T COG1201 391 DVLAQQIVGMALEK--VWEVEEAYRVVRR 417 (814)
T ss_pred HHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf 57888997999627--6989999999973
No 455
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.48 E-value=0.017 Score=36.03 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHCCCCEEEECCCCCH-HHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 752059988996575879-9999999987397010200047888889999997553046
Q gi|254780724|r 320 NCLRMRPERIILGEVRGP-EVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGG 377 (483)
Q Consensus 320 ~aLR~~PD~IiVGEiRg~-Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~ 377 (483)
.+-.++-|+|++-..|.. =+++.+.++--| |+ |+++.+..+...=-.++-+..+
T Consensus 487 ~~~~qr~~~vl~l~~~sll~~~~~l~~~peg--gv--~~~~~~~~~~~rL~aQl~lLdp 541 (726)
T PRK13341 487 GITWQRHDRVLNLANRSLLWALEPLRAVPEG--GV--TVLCESSDDIVRLEAQLDLLDP 541 (726)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHCCCC--CE--EEEECCHHHHHHHHHHHHHCCH
T ss_conf 3665634359983385126526778618998--66--9983788899999999874681
No 456
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=95.48 E-value=0.015 Score=36.45 Aligned_cols=40 Identities=33% Similarity=0.551 Sum_probs=28.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEECCHHH
Q ss_conf 884899818888888999999830387-6767999642131
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDK-DERIVTCEDTAEL 289 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~-~~rivtIED~~El 289 (483)
--+|||.|.||||||-.|+-|+..|-. .+|.|..--.-++
T Consensus 208 ~Qh~L~~GTtG~GKs~~lr~LL~~iR~rGd~AIiYDkgC~f 248 (613)
T TIGR02759 208 VQHILIHGTTGSGKSVALRKLLRWIRQRGDRAIIYDKGCTF 248 (613)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 22526645417438999999999998639858998257420
No 457
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.48 E-value=0.03 Score=34.37 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 9999989862258848998188888889999998303876767
Q gi|254780724|r 238 EGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERI 280 (483)
Q Consensus 238 ~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ri 280 (483)
.....|.....++..|+..|.-|||||||.++++..+.-+..|
T Consensus 13 ~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V 55 (149)
T COG0802 13 ALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNV 55 (149)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9999999657899889997787688599999999974999752
No 458
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.023 Score=35.10 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8622588489981888888899999983038767679996
Q gi|254780724|r 245 IIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE 284 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE 284 (483)
+-++.+..+-..||.||||||+|+.+.+...|+.--|..-
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~ 62 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62 (345)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 5506886899977898767889999857577887569999
No 459
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.027 Score=34.68 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=14.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 48998188888889999998303
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYI 274 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i 274 (483)
|++|.|+||+|||.+++.++..+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 07998899987328999999999
No 460
>PRK01172 ski2-like helicase; Provisional
Probab=95.46 E-value=0.045 Score=33.12 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 9889999989862258-848998
Q gi|254780724|r 235 VTAEGARLLQIIGRIR-CNVLIS 256 (483)
Q Consensus 235 ~~~~~~~~l~~~v~~~-~nilVs 256 (483)
++.+...+...+.+.+ -.+++|
T Consensus 295 L~~~eR~lVE~~f~~g~i~vl~a 317 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99899999999998699649971
No 461
>PRK00254 ski2-like helicase; Provisional
Probab=95.45 E-value=0.048 Score=32.89 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=4.8
Q ss_pred HHHHHHHCCC
Q ss_conf 9999980981
Q gi|254780724|r 173 QRIVNQVGRR 182 (483)
Q Consensus 173 ~rla~~~g~~ 182 (483)
.+++.++||+
T Consensus 363 ~QM~GRAGR~ 372 (717)
T PRK00254 363 QQMMGRAGRP 372 (717)
T ss_pred HHHHHHCCCC
T ss_conf 8862506999
No 462
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=95.45 E-value=0.025 Score=34.94 Aligned_cols=41 Identities=27% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 98899999898622---588489981888888899999983038
Q gi|254780724|r 235 VTAEGARLLQIIGR---IRCNVLISGGTGSGKTTLLNCLTRYID 275 (483)
Q Consensus 235 ~~~~~~~~l~~~v~---~~~nilVsG~TGSGKTT~L~al~~~i~ 275 (483)
+...+.++|+.+++ -++++++-||-.|||||+..||+....
T Consensus 137 ~~~~i~~~lk~~v~N~PKkRy~lFkGPvNsGKTTlAAAlldLcg 180 (417)
T pfam06431 137 MDSVIYDFLKCIVYNIPKKRYWLFKGPIDSGKTTLAAALLDLCG 180 (417)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 27999999999961887411588767867774879999998636
No 463
>PRK08181 transposase; Validated
Probab=95.45 E-value=0.021 Score=35.40 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=65.2
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEE--CCHH-HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 622588489981888888899999983-038767679996--4213-125678756778741666653000189999875
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCE--DTAE-LQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIE--D~~E-l~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
-++.+.|+++.||+|.|||.+..||.. .+....++..+- +-.+ |... +..-++...++..
T Consensus 102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a----------------~~~~~~~~~~~~l 165 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA----------------RRELQLESAIAKL 165 (269)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH----------------HHCCCHHHHHHHH
T ss_conf 886487089989999878899999999999879939997899999999997----------------7558399999997
Q ss_pred HHCCCCEEEECCCC----CH-HHHHHHHHHHCCCCEEEHH-HCCCCHHHHHHHHH
Q ss_conf 20599889965758----79-9999999987397010200-04788888999999
Q gi|254780724|r 322 LRMRPERIILGEVR----GP-EVLDLLQAMNTGHDGSMGT-IHANNARESFGRME 370 (483)
Q Consensus 322 LR~~PD~IiVGEiR----g~-Ea~~~l~A~~TGH~G~ltT-lHa~s~~~ai~RL~ 370 (483)
.++|.+|+.|+- +. ++..+++-++.-|. -=|| +-+|-+.+-...+.
T Consensus 166 --~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye-~~S~IITSn~~~~~W~~~f 217 (269)
T PRK08181 166 --DKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPFGEWNRVF 217 (269)
T ss_pred --HCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHC
T ss_conf --444601220105667998999999999999857-8888998899977887753
No 464
>PRK06547 hypothetical protein; Provisional
Probab=95.44 E-value=0.023 Score=35.20 Aligned_cols=37 Identities=38% Similarity=0.471 Sum_probs=26.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 58848998188888889999998303876767999642
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
....|.|=|+.|||||||.+.|....+. -.+|-+.|-
T Consensus 14 ~~~iVaIDG~sGaGKTTLA~~La~~~~~-~~vvHmDD~ 50 (184)
T PRK06547 14 DMITVLIDGRSGSGKTTLAGELAACWEG-SQLVHLDDL 50 (184)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEECCC
T ss_conf 7699998689988889999999974579-828970577
No 465
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=95.44 E-value=0.046 Score=33.05 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE-ECC
Q ss_conf 89999989862258---84899818888888999999830-3876767999-642
Q gi|254780724|r 237 AEGARLLQIIGRIR---CNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC-EDT 286 (483)
Q Consensus 237 ~~~~~~l~~~v~~~---~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI-ED~ 286 (483)
++..++|..+.... .-|-|+|+.|+||+||+++|..+ .....++.++ =||
T Consensus 13 ~~~~~ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDP 67 (267)
T pfam03308 13 PEARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDP 67 (267)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 7799999998743599559987689988799999999999996898689999789
No 466
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.43 E-value=0.022 Score=35.24 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=30.7
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 225884899818888888999999830387676799964
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
+.+.+..-|=|.-||||||++|.+++.+-|++--+.+.+
T Consensus 20 ~pg~GvtAlFG~SGsGKTtli~~iaGL~rp~~G~i~l~G 58 (361)
T TIGR02142 20 LPGQGVTALFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG 58 (361)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 287406871258997078999998731675668799887
No 467
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.42 E-value=0.011 Score=37.30 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=74.9
Q ss_pred CEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC--CHHH
Q ss_conf 16888405765466788865069988999998986225884899818888888999999830387676799964--2131
Q gi|254780724|r 212 PTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED--TAEL 289 (483)
Q Consensus 212 ~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED--~~El 289 (483)
..++.|-+....-.|++ ..+.++++..+-+.|+-||||||+.|-|-.|..|+.--|.+-+ =.+|
T Consensus 364 R~v~~~Yp~~~~~aL~~--------------i~l~~~~G~~vALVGRSGSGKsTlv~LlPRFy~p~~G~IllDG~~l~d~ 429 (603)
T TIGR02203 364 RNVTFRYPGRDRPALDS--------------ISLVVEPGETVALVGRSGSGKSTLVNLLPRFYEPDSGQILLDGVDLQDY 429 (603)
T ss_pred EEEEEEECCCCHHHHCC--------------CCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHC
T ss_conf 76666537887241236--------------6651158735998706885389998552366045888565278404430
Q ss_pred CCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-HH---HHHHHHHHCCCCEEEHHHCCCCH
Q ss_conf 2567-87567787416666530001899998752059988996575879-99---99999987397010200047888
Q gi|254780724|r 290 QLQQ-PHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGP-EV---LDLLQAMNTGHDGSMGTIHANNA 362 (483)
Q Consensus 290 ~l~~-~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~-Ea---~~~l~A~~TGH~G~ltTlHa~s~ 362 (483)
.|.. .+++.+.++.--. -.-|.++=+..+ +++..-+---|||.. ++ .+++..+=-|= =|-+=-|.+
T Consensus 430 ~L~~LR~q~alVsQ~V~L---FdDTiA~NvaYg-~~da~~~~~a~v~~A~~~Ayl~dfvd~lP~Gl---dt~vG~NG~ 500 (603)
T TIGR02203 430 TLADLRRQVALVSQDVVL---FDDTIANNVAYG-RLDAEQVDRAEVERALAAAYLQDFVDKLPLGL---DTPVGENGS 500 (603)
T ss_pred CHHHHHHHHHHHCCCEEE---CCCCHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCC
T ss_conf 266356230002152372---053267764404-23400178789999999864688871478885---634241322
No 468
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.02 Score=35.64 Aligned_cols=163 Identities=19% Similarity=0.235 Sum_probs=66.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCC--CCCHHHHHHHHHHHH
Q ss_conf 741877896789999999999885656335885883321799856991899827838971762--079899999999999
Q gi|254780724|r 99 SVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGIN--FRDNEQLLSVCQRIV 176 (483)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~--f~~~~~l~~~i~rla 176 (483)
++--..++..+.+++.+ +++++-..|.- -++-...++++. .=.+.|+|-++|+....... ..+.+. ++.
T Consensus 165 DEPts~LD~~~~~~l~~-~l~~l~~~G~t-il~isH~l~~~~-~~~Drv~vl~~G~iv~~~~~~~~~~~~~---l~~--- 235 (501)
T PRK11288 165 DEPTSSLSAREIEQLFR-VIRELRAEGRV-ILYVSHRMEEIF-ALCDAITVFRDGRYVATFDDMAQVDRDR---LVQ--- 235 (501)
T ss_pred CCCCCCCCHHHHHHHHH-HHHHHHHHCCC-EEEECCCHHHHH-HHCCEEEEEECCEEEEECCCHHHCCHHH---HHH---
T ss_conf 58745689899999988-99999872761-265133289999-7588789711885997637213379999---999---
Q ss_pred HHHCCCCCCC-----CCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHC-CC
Q ss_conf 9809812433-----87787982376203453155357881688840576546678886506998899999898622-58
Q gi|254780724|r 177 NQVGRRVDES-----SPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGR-IR 250 (483)
Q Consensus 177 ~~~g~~i~~~-----~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~-~~ 250 (483)
...++.+... .|..+..+ ++.-...+...++.+++|++ ...+.+- -.+|.--..++..+.-+.+ ..
T Consensus 236 ~~~~r~~~~~~~~~~~~~~~~~l----~~~~l~~~~~~~~vsl~v~~--GEivgiv--G~nGsGKSTL~k~L~Gl~~p~~ 307 (501)
T PRK11288 236 AMVGREIGDIYGYRPRPLGDVRL----RLKGLKGPGLREPISFAVRR--GEIVGFF--GLVGAGRSELMKLLYGATRRTA 307 (501)
T ss_pred HHHCCCHHHCCCCCCCCCCCEEE----EEEECCCCCCCCCEEEEEEC--CEEEEEE--CCCCCCHHHHHHHHCCCCCCCC
T ss_conf 86285535405878888774379----99850378745663478708--8399975--6888648799998438748876
Q ss_pred CCEEEECCCCCCHHH--HHHHHHHHCCCCC
Q ss_conf 848998188888889--9999983038767
Q gi|254780724|r 251 CNVLISGGTGSGKTT--LLNCLTRYIDKDE 278 (483)
Q Consensus 251 ~nilVsG~TGSGKTT--~L~al~~~i~~~~ 278 (483)
++|.+.|..=+.++. .++.-..++|.+.
T Consensus 308 G~I~~~G~~i~~~~~~~~~~~gi~~vp~dr 337 (501)
T PRK11288 308 GQVYLDGKPVDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred CEEEECCEECCCCCHHHHHHCCEEEECCCC
T ss_conf 659999998887797899861778601200
No 469
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.41 E-value=0.026 Score=34.76 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=34.2
Q ss_pred HHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHHCC-----CCCCEEEEEC
Q ss_conf 9999898622----588489981888888899999983038-----7676799964
Q gi|254780724|r 239 GARLLQIIGR----IRCNVLISGGTGSGKTTLLNCLTRYID-----KDERIVTCED 285 (483)
Q Consensus 239 ~~~~l~~~v~----~~~nilVsG~TGSGKTT~L~al~~~i~-----~~~rivtIED 285 (483)
...|++.+.+ .+..++.-||+||||||+++.|....- ++-++.+++=
T Consensus 63 ~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w 118 (361)
T smart00763 63 FVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999999844671256999988998877999999999999862677685599983
No 470
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.41 E-value=0.017 Score=36.06 Aligned_cols=63 Identities=24% Similarity=0.224 Sum_probs=43.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 25884899818888888999999830387676799964213125678756778741666653000189999875205
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRM 324 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~ 324 (483)
+.+..|-++|-.||||||+.++|...+....+-+.+=|..+++--- +..+++..+=.+++.|.
T Consensus 5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR~~~--------------~~~gfs~~~R~~n~~r~ 67 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIF--------------GHSGYDKESRIEMALKR 67 (176)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH--------------CCCCCCHHHHHHHHHHH
T ss_conf 8867999789999989999999999999759977998868999873--------------65898999999999999
No 471
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.40 E-value=0.17 Score=29.00 Aligned_cols=108 Identities=13% Similarity=0.028 Sum_probs=60.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCC----CEEEEEEECCCCC------CCCCCHHHHHHH
Q ss_conf 884899818888888999999830387676799964213125678----7567787416666------530001899998
Q gi|254780724|r 250 RCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQP----HVVRLETRPPNIE------GEGEITMRDLVK 319 (483)
Q Consensus 250 ~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~----~~v~~~~~~~~~e------~~~~~t~~~ll~ 319 (483)
++.|+.-|++.|||||+.++|-...+...-.+-+-+=.+...+.. .++. ..+.... ....-.|...+.
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~ia 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--FDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 74999868998988999999998476756884185898867631368754223--4877663541569999999999999
Q ss_pred HHHHCCCCEEEECCCCCHHH-HHHHHHHHCCCCEEEHHHCCC
Q ss_conf 75205998899657587999-999999873970102000478
Q gi|254780724|r 320 NCLRMRPERIILGEVRGPEV-LDLLQAMNTGHDGSMGTIHAN 360 (483)
Q Consensus 320 ~aLR~~PD~IiVGEiRg~Ea-~~~l~A~~TGH~G~ltTlHa~ 360 (483)
+..++.-+.|+=.=+.+... .+.++ ...|++=.+--+|++
T Consensus 80 a~a~aG~nvIvD~v~~~~~~l~d~~~-~L~g~~v~~VGV~C~ 120 (175)
T cd00227 80 AMARAGANVIADDVFLGRAALQDCWR-SFVGLDVLWVGVRCP 120 (175)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHH-HHCCCCEEEEEEECC
T ss_conf 99977998898631238088999999-857992799998789
No 472
>COG1204 Superfamily II helicase [General function prediction only]
Probab=95.39 E-value=0.024 Score=35.00 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=8.8
Q ss_pred HHHHHHHHCCCCCHHHHCCCC
Q ss_conf 999998856563358858833
Q gi|254780724|r 115 EDLCNDILGYGPLQPLIARDD 135 (483)
Q Consensus 115 ~~i~~e~~glGpL~~ll~D~~ 135 (483)
+.+..+.|..|.|.-+..-|+
T Consensus 329 R~~vE~~Fr~g~ikVlv~TpT 349 (766)
T COG1204 329 RQLVEDAFRKGKIKVLVSTPT 349 (766)
T ss_pred HHHHHHHHHCCCCEEEEECHH
T ss_conf 999999986698549995457
No 473
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.39 E-value=0.024 Score=35.01 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHHC
Q ss_conf 8999998986225884899818888888-9999998303
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKT-TLLNCLTRYI 274 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKT-T~L~al~~~i 274 (483)
.+|+.-+..+++.++++++=.|||+||| .+|.+.+.+.
T Consensus 14 ~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~al~~~ 52 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWL 52 (289)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999999999997499799989996518999999999999
No 474
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.39 E-value=0.024 Score=35.01 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHHC
Q ss_conf 8999998986225884899818888888-9999998303
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKT-TLLNCLTRYI 274 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKT-T~L~al~~~i 274 (483)
.+|+.-+..+++.++++++=.|||+||| .+|.+.+.+.
T Consensus 14 ~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~al~~~ 52 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWL 52 (289)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999999999997499799989996518999999999999
No 475
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.39 E-value=0.0043 Score=40.22 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=34.4
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 62258848998188888889999998303876767999642
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDT 286 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~ 286 (483)
-++.+..+.+.||-||||||+.|.+..+++|+.--|+.+..
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~ 66 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR 66 (250)
T ss_pred EECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEECCC
T ss_conf 87387289998899888245665323640588736998880
No 476
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.38 E-value=0.035 Score=33.91 Aligned_cols=88 Identities=20% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCH-------HHC------CC--CCCEEEEEEECCCCCCCC
Q ss_conf 622588489981888888899999983038767679996421-------312------56--787567787416666530
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTA-------ELQ------LQ--QPHVVRLETRPPNIEGEG 310 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~-------El~------l~--~~~~v~~~~~~~~~e~~~ 310 (483)
-++.+.++-+.|..||||||+-+.++..++|..--|+.+... |.. +. +...-.+...+. +-.|
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPh--elSG 112 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPH--ELSG 112 (268)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCC--CCCC
T ss_conf 97589878999368887787999997283888726998685311136667999999999980988778633883--0373
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 0018999987520599889965758
Q gi|254780724|r 311 EITMRDLVKNCLRMRPERIILGEVR 335 (483)
Q Consensus 311 ~~t~~~ll~~aLR~~PD~IiVGEiR 335 (483)
+--.+-.+.-||=.+|+.|+..|.-
T Consensus 113 GQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 1335699999985098679743721
No 477
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein; InterPro: IPR014343 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry represent the ATP-binding protein of a conserved four-gene ABC transporter operon found next to ectoine utilisation operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This entry shows strong sequence similarity to a number of amino acid ABC transporter ATP-binding proteins..
Probab=95.38 E-value=0.015 Score=36.41 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHHHHCCCCCEEEEC---CCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 99898622588489981---88888889999998303876767999642131256787
Q gi|254780724|r 241 RLLQIIGRIRCNVLISG---GTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPH 295 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG---~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~ 295 (483)
+-+..-|..+-.+-+.| |.||||||.|+-|+..=+-++-.+-||-..-|+.++.+
T Consensus 18 dg~~~~V~~Gek~~~iG~~~PsGSGK~T~LRiLMTLE~i~~G~i~~~ge~~~H~~G~~ 75 (256)
T TIGR03005 18 DGLELEVAAGEKVALIGADRPSGSGKSTILRILMTLETIDEGSIQVEGEQLYHMKGRN 75 (256)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
T ss_conf 1455401024120110577889973588888888623666873687211210454899
No 478
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=95.37 E-value=0.018 Score=35.90 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=30.1
Q ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 89862258848998188888889999998303876767
Q gi|254780724|r 243 LQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERI 280 (483)
Q Consensus 243 l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~ri 280 (483)
+++-......|+..|--|||||||.++++..+--+..+
T Consensus 21 lklh~d~~~v~~L~GDlGaGKTtl~~G~~~~LG~~~~~ 58 (147)
T TIGR00150 21 LKLHLDLGTVVLLKGDLGAGKTTLVKGLLQGLGITGNV 58 (147)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 98519975389973234666589999999837922688
No 479
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=95.36 E-value=0.019 Score=35.75 Aligned_cols=141 Identities=22% Similarity=0.200 Sum_probs=76.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-------ECCHHHC----------------CCCCC-----
Q ss_conf 9862258848998188888889999998303876767999-------6421312----------------56787-----
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC-------EDTAELQ----------------LQQPH----- 295 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI-------ED~~El~----------------l~~~~----- 295 (483)
.+.+.-+-.++|-|+.||||||+++-|-..|-|..--|.| -|+.||+ +||..
T Consensus 13 ~l~i~~GEi~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~IDG~~I~~~~~~eLREVRRkKI~~V~Q~~aLfPHmTil~N~ 92 (372)
T TIGR01186 13 DLEIAKGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGQIFIDGENIMKISDVELREVRRKKIGMVFQQFALFPHMTILQNT 92 (372)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 01552543899977899857899999872257778746766214313693475444245665654443027641577787
Q ss_pred -----------------------EEEE---EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC---CHHH-----HH
Q ss_conf -----------------------5677---874166665300018999987520599889965758---7999-----99
Q gi|254780724|r 296 -----------------------VVRL---ETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVR---GPEV-----LD 341 (483)
Q Consensus 296 -----------------------~v~~---~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiR---g~Ea-----~~ 341 (483)
.|-+ +...-..+=+|+.-.+=.|--||-.+||.|+.-|-= |+=+ -+
T Consensus 93 ~~g~~L~g~~~~~R~ekAle~LklVglGe~y~~~YPdeLSGG~qQRvGl~RALa~~PdilLMDEaFsALDPliR~~lQdE 172 (372)
T TIGR01186 93 SLGLELLGIPEQERKEKALELLKLVGLGEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSLQDE 172 (372)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 77477518867788999998764157987601158620148730589999987438780540476433571001678899
Q ss_pred H--HHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHH
Q ss_conf 9--9998739701020004788888999999755304--679998999
Q gi|254780724|r 342 L--LQAMNTGHDGSMGTIHANNARESFGRMEAMIAMG--GFTLPSQMV 385 (483)
Q Consensus 342 ~--l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~--~~~~~~~~~ 385 (483)
+ ||+-. +..=++-|.==+-|--.-.|++-|=.-. ..+.|.+.+
T Consensus 173 l~kLq~~~-~kTIvFitHDlDEA~rigDRIvilk~GeiVQvGTPdeIL 219 (372)
T TIGR01186 173 LKKLQATL-QKTIVFITHDLDEALRIGDRIVILKAGEIVQVGTPDEIL 219 (372)
T ss_pred HHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHEECCCEEEECCCHHHH
T ss_conf 99999860-980899941767887675132011068678842846874
No 480
>PRK09087 hypothetical protein; Validated
Probab=95.36 E-value=0.22 Score=28.22 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC---CHHHCCCCCCE
Q ss_conf 6546678886506998899999898622-5884899818888888999999830387676799964---21312567875
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQIIGR-IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED---TAELQLQQPHV 296 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~~~v~-~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED---~~El~l~~~~~ 296 (483)
...++.++++-.. .+.....++...-. +...+.+.||.|||||.++++++..... .++.... .......+...
T Consensus 15 ~~~~~~dnF~vs~-~N~~a~~~l~~~~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T PRK09087 15 QPGYGRDDLVVTE-SNRAAVSLVDRWPNWPSPVVVLAGPVGSGKTHLASIWREKADA--LLVHPNEIGSDAANAAAERPV 91 (226)
T ss_pred CCCCCCCCEEECC-CHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--EEECHHHCCHHHHHHHCCCCE
T ss_conf 8778733647757-6999999998472677775899899999886999999998099--683668747466765327988
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-HH----HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHH
Q ss_conf 67787416666530001899998752059988996575879-99----99999987397010200047888889999997
Q gi|254780724|r 297 VRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGP-EV----LDLLQAMNTGHDGSMGTIHANNARESFGRMEA 371 (483)
Q Consensus 297 v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~-Ea----~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~ 371 (483)
+ .. .-+.....+..+..++. .++.+--.+++.=-..+ +. .+ +..=... |....++..+-..-..-|..
T Consensus 92 ~-id--d~d~~~~dEe~LFhl~N-~~~~~~~~LLlts~~~p~~l~~~L~D-L~SRL~~--~~~~~I~~pdD~ll~~~L~k 164 (226)
T PRK09087 92 L-IE--DIDAGGFDETGLFHLIN-SVRQAGTSLLMTSRLWPSAWNVKLPD-LKSRLKA--ATVVEIGEPDDALLSGVIFK 164 (226)
T ss_pred E-EE--CCCCCCCCHHHHHHHHH-HHHHCCCEEEEECCCCHHHCCCCCHH-HHHHHHC--CEEEEECCCCHHHHHHHHHH
T ss_conf 9-97--48777747899999999-99853987999889895666762468-9999857--85798359998999999999
Q ss_pred HHHHCCCCCCHHHHH
Q ss_conf 553046799989999
Q gi|254780724|r 372 MIAMGGFTLPSQMVR 386 (483)
Q Consensus 372 m~~~~~~~~~~~~~~ 386 (483)
++..-|..++.+++.
T Consensus 165 ~~~~r~l~l~~~v~~ 179 (226)
T PRK09087 165 LFADRQLYVEPHVVY 179 (226)
T ss_pred HHHHCCCCCCHHHHH
T ss_conf 987576578888999
No 481
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.35 E-value=0.013 Score=36.90 Aligned_cols=108 Identities=24% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-HHCCCC-E
Q ss_conf 84899818888888999999830387676799964213125678756778741666653000189999875-205998-8
Q gi|254780724|r 251 CNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC-LRMRPE-R 328 (483)
Q Consensus 251 ~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a-LR~~PD-~ 328 (483)
.-++++|.||||||-+|++|... ..-++=+|.-.- |...+.- ......+ ....|..+|-.. ++.+|. +
T Consensus 138 ~~~vl~G~TG~GKT~lL~~L~~~---G~~viDLEglA~----HRGS~FG--~~~~~QP-sQk~FE~~L~~~l~~~~~~~i 207 (333)
T PRK11784 138 PLVVLGGMTGSGKTRLLQALANA---GAQVLDLEGLAN----HRGSSFG--RLGGPQP-SQKDFENLLAEALLKLDPAPI 207 (333)
T ss_pred CCEEEECCCCCCHHHHHHHHHHC---CCCEECHHHHHH----CCCCCCC--CCCCCCC-CHHHHHHHHHHHHHHCCCCCE
T ss_conf 85998678887789999999975---997433898863----2564235--8899998-789999999999980899856
Q ss_pred EEECCCC--CHHH--HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHH
Q ss_conf 9965758--7999--999999873970102000478888899999975
Q gi|254780724|r 329 IILGEVR--GPEV--LDLLQAMNTGHDGSMGTIHANNARESFGRMEAM 372 (483)
Q Consensus 329 IiVGEiR--g~Ea--~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m 372 (483)
++=+|-| |.=. ..++++|.+|+. ++ +.+ +-..=+.+|..-
T Consensus 208 ~vE~ESr~IG~~~iP~~l~~~M~~a~~-i~--i~~-~~e~Rv~~l~~e 251 (333)
T PRK11784 208 VVEDESRRIGRVHLPEALYEAMQAAPI-VE--VEA-PLEERVERLLED 251 (333)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCE-EE--EEC-CHHHHHHHHHHH
T ss_conf 996010030671389999999962988-99--989-999999999998
No 482
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=95.35 E-value=0.02 Score=35.58 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=79.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE-CCHHHCCCCC--CEEEEEEECCC---------CC--------CCCCC
Q ss_conf 89981888888899999983038767679996-4213125678--75677874166---------66--------53000
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCE-DTAELQLQQP--HVVRLETRPPN---------IE--------GEGEI 312 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i~~~~rivtIE-D~~El~l~~~--~~v~~~~~~~~---------~e--------~~~~~ 312 (483)
-+|||==|||||||++-|+ .++..+||..|= +=-++-+++. ..+...+++.. .| ...-=
T Consensus 7 TvvTGFLGaGKTTLiRhlL-~NA~GkRiAvIVNEFGd~GiDG~iLk~Cgi~~C~Eeeaq~~i~ELaNGCiCCTVaDdF~P 85 (349)
T TIGR02475 7 TVVTGFLGAGKTTLIRHLL-ENAEGKRIAVIVNEFGDLGIDGEILKACGIEACSEEEAQVNIVELANGCICCTVADDFIP 85 (349)
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHCCCEEECCCCCEECCCHHHHHH
T ss_conf 7873756761589999997-174787699998525560636799964356788801200014880889731032012567
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHH-HHHHHHHH--------CCCCEEEHHH---------CCCCHHHHH-HHHHHHH
Q ss_conf 189999875205998899657587999-99999987--------3970102000---------478888899-9999755
Q gi|254780724|r 313 TMRDLVKNCLRMRPERIILGEVRGPEV-LDLLQAMN--------TGHDGSMGTI---------HANNARESF-GRMEAMI 373 (483)
Q Consensus 313 t~~~ll~~aLR~~PD~IiVGEiRg~Ea-~~~l~A~~--------TGH~G~ltTl---------Ha~s~~~ai-~RL~~m~ 373 (483)
+|..|| +.|.+||-|+| |.-|.-- .-++||-+ |= +||+|=+ =|+++...- .|-.+--
T Consensus 86 tm~~LL--~R~~~~DHIlI-ETSGLALPKPLV~AF~WP~iRs~vTV-DGVvtVVDg~AvAAG~fA~D~dav~aQR~aD~n 161 (349)
T TIGR02475 86 TMTKLL--ARRERPDHILI-ETSGLALPKPLVQAFQWPEIRSRVTV-DGVVTVVDGPAVAAGRFAADPDAVDAQRAADDN 161 (349)
T ss_pred HHHHHH--HCCCCCCEEEE-ECCHHHCCHHHHHHCCCCCCCCCEEE-CEEEEEECHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 999997--03889866887-44210022158864688212271275-417885444650358885437899999860877
Q ss_pred HHCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 304679998999999974235889998
Q gi|254780724|r 374 AMGGFTLPSQMVREIITSSLDVIVQTQ 400 (483)
Q Consensus 374 ~~~~~~~~~~~~~~~ia~avd~iV~~~ 400 (483)
+.+.-+.=.|....||++| |+||-=|
T Consensus 162 LDHed~PLeElFEDQlacA-DLviLnK 187 (349)
T TIGR02475 162 LDHEDSPLEELFEDQLACA-DLVILNK 187 (349)
T ss_pred CCCCCCCCHHHHHHHHHHH-HHHHHHH
T ss_conf 7888885123366899988-9998534
No 483
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=95.35 E-value=0.018 Score=35.91 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9998986225884899818888888999999830
Q gi|254780724|r 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 240 ~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
.+-|.....+++.++++|+.|.||+||+|+|+..
T Consensus 184 l~~L~~~l~~GkT~vl~G~SGVGKSTLiN~L~g~ 217 (353)
T PRK01889 184 VDALQAWLKPGKTVALLGSSGVGKSTLVNALLGE 217 (353)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 8999998634978999778886699999875653
No 484
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.34 E-value=0.036 Score=33.74 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 89999989862258848998188888889999998303876
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD 277 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~ 277 (483)
.....-+..+.-++-|+|..||.|||||.+.+.|-...|+-
T Consensus 197 ~~akraleIAAAGgHnlLl~GpPG~GKTMlA~rlp~ILPpL 237 (506)
T PRK09862 197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDL 237 (506)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999974468865987699945989997751238998
No 485
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.33 E-value=0.045 Score=33.14 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=49.2
Q ss_pred HHHHCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCC
Q ss_conf 886506998899999898622-5884899818888888999999830387676799964213125678756778741666
Q gi|254780724|r 228 HLVSFGAVTAEGARLLQIIGR-IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNI 306 (483)
Q Consensus 228 ~l~~~g~~~~~~~~~l~~~v~-~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~ 306 (483)
.|.+.|+. ..+..++..+-. ...-.+....|-+-+..-+.. .+. .+-.++.++.... ...+.-+......
T Consensus 245 ~LLd~gf~-~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~--~~~-~~p~~v~i~~~~~---~~~~v~q~~~~~~-- 315 (472)
T PRK01297 245 RMLDMGFI-PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAK--QWT-TDPAIVEIEPENV---ASDTVEQHVYAVA-- 315 (472)
T ss_pred HHHCCCCH-HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH--HHC-CCCEEEEECCCCC---CCCCEEEEEEECC--
T ss_conf 21025759-9999999968985571699985257789999999--977-9988999657766---7776028999818--
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CEE-EE-CCCCCHHH-HHHHHHHHCCCCEEEHHHCCCCHHHH
Q ss_conf 65300018999987520599-889-96-57587999-99999987397010200047888889
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRP-ERI-IL-GEVRGPEV-LDLLQAMNTGHDGSMGTIHANNARES 365 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~P-D~I-iV-GEiRg~Ea-~~~l~A~~TGH~G~ltTlHa~s~~~a 365 (483)
+ -+-..++...+++.+ +.+ |. ......+. ...++ ..|. ....+|++-+..-
T Consensus 316 -~---~dk~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~--~~g~--~~~~lhg~l~q~~ 370 (472)
T PRK01297 316 -G---SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLV--KDGI--NAAQLSGDVPQHK 370 (472)
T ss_pred -H---HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH--HCCC--CEEEEECCCCHHH
T ss_conf -8---8999999999984798736896174999999998765--4496--1686437789999
No 486
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=95.32 E-value=0.012 Score=37.10 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-EEEEEECCCCEEEE-ECCCCCCCCCEE-EEE-ECCCCCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 999999999980981243387-78798237620345-315535788168-884-05765466788865069988999998
Q gi|254780724|r 168 LLSVCQRIVNQVGRRVDESSP-ICDARLLDGSRVNV-IIPPLALDGPTL-TIR-KFKKDKLTLDHLVSFGAVTAEGARLL 243 (483)
Q Consensus 168 l~~~i~rla~~~g~~i~~~~P-~~d~~lpdg~Ri~~-~~~p~s~~G~~i-~IR-k~~~~~~~l~~l~~~g~~~~~~~~~l 243 (483)
...|++.+.....+.-+--+| .+.....| .|+.. ...... ..+++ .+- |+....++.- ......-...+..=.
T Consensus 5 ~~~w~~~~~~~~~~d~~~~kP~~~GV~~~~-l~a~Gn~~~~~~-~~~T~~N~~~~~~~~~~r~~-~~~~~~~~~~ILk~~ 81 (1466)
T TIGR00956 5 AKAWVKNFRKLIDSDPIYYKPYKLGVAYKN-LSAYGNVAADAD-YQSTLPNILLKILTEGFRKL-KKEKDTKTFDILKPM 81 (1466)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEEE-EEEEEECCCCHH-HHCCHHHHHHHHHHHHHHHH-HHCCCCCEEEECCCC
T ss_conf 789999999875206530488325688897-468850346602-20436568999999999875-301355504330470
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC----CCEEEEE--CCHHHCCC--CCCEEEEEEECCCCCCCCCCHHH
Q ss_conf 9862258848998188888889999998303876----7679996--42131256--78756778741666653000189
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKD----ERIVTCE--DTAELQLQ--QPHVVRLETRPPNIEGEGEITMR 315 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~----~rivtIE--D~~El~l~--~~~~v~~~~~~~~~e~~~~~t~~ 315 (483)
..+++++-.+||=|.+||||||||+++...+..- +-.|+-. ++.|+.-+ ++-+..-++ ...=+.+|..
T Consensus 82 ~gl~~PGEl~vVLGrPGaGCsTlLk~ia~~t~gf~~~~~g~i~YdG~~~~ei~k~yrGdv~Y~aE~----DvHfP~LTV~ 157 (1466)
T TIGR00956 82 DGLIKPGELTVVLGRPGAGCSTLLKTIASKTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET----DVHFPHLTVG 157 (1466)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEEECCCCCEEEECCCCHHHHHCCCCCCEEEECCC----CCCCCCCCHH
T ss_conf 100267617997248997356655565320001431576448746888465411477226773144----5317866425
Q ss_pred HHHHHHHHCC-CCEEEECCCC------------CHHHHHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 9998752059-9889965758------------79999999998739701020004788888999999755304679998
Q gi|254780724|r 316 DLVKNCLRMR-PERIILGEVR------------GPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPS 382 (483)
Q Consensus 316 ~ll~~aLR~~-PD~IiVGEiR------------g~Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~ 382 (483)
+=|..|-|++ |.-=.-|=-| .+|.-- .|-++-|.+....+.+=..|...+ .+-+.
T Consensus 158 eTL~FaA~~~TP~nR~~gvsr~~Y~~~daGilPePevdl-----------fmksiaaGnvkssl~~~v~~a~yG-L~HT~ 225 (1466)
T TIGR00956 158 ETLDFAARCKTPQNRPKGVSREEYAKHDAGILPEPEVDL-----------FMKSIAAGNVKSSLVADVVMATYG-LSHTR 225 (1466)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHH-----------HHHHHHHCCHHHHHHHHHHHHHHC-CCCCC
T ss_conf 799999984687777667778999732278899850567-----------776654021268999999999834-12034
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEE
Q ss_conf 999999974235889998769998789999999841
Q gi|254780724|r 383 QMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGM 418 (483)
Q Consensus 383 ~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~ 418 (483)
++- + .=|+ +.-...|.||=.+|.|+.-.
T Consensus 226 nTk---V--GNDf---vRGVSGGERKRVsIaE~~~~ 253 (1466)
T TIGR00956 226 NTK---V--GNDF---VRGVSGGERKRVSIAEVSLA 253 (1466)
T ss_pred CCC---C--CCCE---EECCCCCCCCEEEEEEEEEE
T ss_conf 775---3--6712---72100785330234546440
No 487
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.32 E-value=0.046 Score=33.02 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 58848998188888889999998303876767999642131256787567787416666530001899998752059988
Q gi|254780724|r 249 IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPER 328 (483)
Q Consensus 249 ~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~ 328 (483)
.+.|+++.|++|+|||.++-|+...+-..-.-+++=..+|+.-.-.+.. .++.. -..+.+ .-.+.|.
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~--------~~~~~---~~~l~~--~l~~~dl 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF--------DEGRL---EEKLLR--ELKKVDL 170 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH--------HCCCH---HHHHHH--HHHHCCE
T ss_conf 5882899899998799999999999998398499988599999999987--------45526---899998--8752898
Q ss_pred EEECCCC----CH-HHHHHHHHHHCCC-CEEEHHHCCCCHHHHHHHHHH
Q ss_conf 9965758----79-9999999987397-010200047888889999997
Q gi|254780724|r 329 IILGEVR----GP-EVLDLLQAMNTGH-DGSMGTIHANNARESFGRMEA 371 (483)
Q Consensus 329 IiVGEiR----g~-Ea~~~l~A~~TGH-~G~ltTlHa~s~~~ai~RL~~ 371 (483)
+|+.|+- +. ++-.++|.+..=- ..++ =+=+|.+.+.+.++..
T Consensus 171 LIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 171 LIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFG 218 (254)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCC
T ss_conf 99823677668815587999999999973054-2020588278886606
No 488
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.32 E-value=0.052 Score=32.69 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.5
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 489981888888899999983
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTR 272 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~ 272 (483)
||++.|..||||||+|+.+..
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~ 21 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKP 21 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999972
No 489
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.32 E-value=0.019 Score=35.78 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 25884899818888888999999830387
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDK 276 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~ 276 (483)
....||++.|..||||||.-+.|+..+.-
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~ 30 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99980898889999989999999999596
No 490
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=95.30 E-value=0.053 Score=32.59 Aligned_cols=109 Identities=24% Similarity=0.417 Sum_probs=61.2
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 99898622588489981888888899999983038767679996421312567875677874166665300018999987
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~ 320 (483)
+|-++-.+--+-+|..||+|+|||=|.+|....-.= +=+.+.+-.-|-|.. |-|.==.+||++.
T Consensus 83 kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~V----------PFF~iSGSdFVEMFV------GVGASRVRDLFeq 146 (505)
T TIGR01241 83 KFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV----------PFFSISGSDFVEMFV------GVGASRVRDLFEQ 146 (505)
T ss_pred HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC----------CCEEECCCCEEECCC------CCCCEEHHHHHHH
T ss_conf 798727889871473178784246788752025889----------624740761011120------5640001445799
Q ss_pred HHHCCCCEEEECCCC--CHHHHHHHHHHHCCCCEEEHHHCCCCHH-HHHHHHHHHHHHCCCC
Q ss_conf 520599889965758--7999999999873970102000478888-8999999755304679
Q gi|254780724|r 321 CLRMRPERIILGEVR--GPEVLDLLQAMNTGHDGSMGTIHANNAR-ESFGRMEAMIAMGGFT 379 (483)
Q Consensus 321 aLR~~PD~IiVGEiR--g~Ea~~~l~A~~TGH~G~ltTlHa~s~~-~ai~RL~~m~~~~~~~ 379 (483)
|-++-|-+|.|-||= |. +.|- |. =-|+||=+ .++..|. +-|-|.+
T Consensus 147 AK~nAPCIIFIDEIDAVGr---------~RGa-G~--lGGGnDEREQTLNQLL--VEMDGF~ 194 (505)
T TIGR01241 147 AKKNAPCIIFIDEIDAVGR---------QRGA-GE--LGGGNDEREQTLNQLL--VEMDGFG 194 (505)
T ss_pred HHHHCCCEEEEECHHHCCC---------CCCC-CC--CCCCCCHHHHHHHHHH--EECCCCC
T ss_conf 9971897056401000033---------3564-36--6765413554332331--3317858
No 491
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.025 Score=34.91 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=33.0
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 225884899818888888999999830387676799964
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
..+++.--+-|..||||||++|.++..+.|++-.|++.+
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lng 59 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG 59 (352)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 877856999647888716189897434776661899898
No 492
>KOG2373 consensus
Probab=95.29 E-value=0.0045 Score=40.11 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=18.0
Q ss_pred HCCCCCEEEECCCCCCHHHHHH
Q ss_conf 2258848998188888889999
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLN 268 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~ 268 (483)
.+.+-.-+.+|||||||||||.
T Consensus 270 hR~GElTvlTGpTGsGKTTFls 291 (514)
T KOG2373 270 HRPGELTVLTGPTGSGKTTFLS 291 (514)
T ss_pred CCCCCEEEEECCCCCCCEEEEH
T ss_conf 7877269985688898236756
No 493
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.29 E-value=0.054 Score=32.55 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=48.4
Q ss_pred HHHHCCCCCHHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCC
Q ss_conf 886506998899999898622--588489981888888899999983038767679996421312567875677874166
Q gi|254780724|r 228 HLVSFGAVTAEGARLLQIIGR--IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPN 305 (483)
Q Consensus 228 ~l~~~g~~~~~~~~~l~~~v~--~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~ 305 (483)
.|.+.|+. .++..++..+-. .+.++++ ..|=+.+..-+.. .++..... +.++. +-.. ..+..+....+.+
T Consensus 169 ~lld~gF~-~~i~~i~~~~p~~~~r~~~lf-SATl~~~v~~la~--~~l~~p~~-i~v~~--~~~~-~~~i~~~~~~~~~ 240 (423)
T PRK04837 169 RMFDLGFI-KDIRWLFRRMPPANQRLNMLF-SATLSYRVRELAF--EHMNNPEY-VEVEP--EQKT-GHRIKEELFYPSN 240 (423)
T ss_pred HHHHCCCH-HHHHHHHHHCCCCHHEEEEEE-ECCCCHHHHHHHH--HHCCCCEE-EEECC--CCCC-CCCEEEEEEEECH
T ss_conf 54302639-999999996896221089997-0368889999999--97789879-99657--7656-6542699999172
Q ss_pred CCCCCCCHHHHHHHHHHH-CCCCEEEE-CCC-CCHHH-HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHH
Q ss_conf 665300018999987520-59988996-575-87999-99999987397010200047888889999997
Q gi|254780724|r 306 IEGEGEITMRDLVKNCLR-MRPERIIL-GEV-RGPEV-LDLLQAMNTGHDGSMGTIHANNARESFGRMEA 371 (483)
Q Consensus 306 ~e~~~~~t~~~ll~~aLR-~~PD~IiV-GEi-Rg~Ea-~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~ 371 (483)
+.+ . .++...+. ..|+.+|| -.. ...+. +..++ ..|+. ...+|++-+...=.+...
T Consensus 241 -~~K-~----~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~--~~g~~--~~~lhg~~~q~~R~~~l~ 300 (423)
T PRK04837 241 -EEK-M----RLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA--ADGHR--VGLLTGDVPQKKRLRILE 300 (423)
T ss_pred -HHH-H----HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH--HCCCC--EEEECCCCCHHHHHHHHH
T ss_conf -779-9----999999984088746886162888999999997--65981--787225457999999999
No 494
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.26 E-value=0.04 Score=33.45 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCC-----CCEEEEEECCCCCCCHHHHHHCCCCCHHHH-HHHH
Q ss_conf 9999999809812433877879823762034531553578-----816888405765466788865069988999-9989
Q gi|254780724|r 171 VCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALD-----GPTLTIRKFKKDKLTLDHLVSFGAVTAEGA-RLLQ 244 (483)
Q Consensus 171 ~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~-----G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~-~~l~ 244 (483)
+.+.+-...|.+|.+..-..++.... ..+.....|.++. +-.++++...... ++ .+.++++ .+.+
T Consensus 114 L~qa~RraIGvrikE~reV~EGeV~~-l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k-~~-------~lg~~i~~ql~~ 184 (450)
T COG1224 114 LTQALRRAIGVRIKETREVYEGEVVE-LEIRRARNPLNPYGKVPSGAIITLKTKDEEK-TL-------RLGPEIAEQLVK 184 (450)
T ss_pred HHHHHHHHHCEEEEEEEEEEEEEEEE-EEEEECCCCCCCCCCCCCCEEEEEEECCCCE-EE-------ECCHHHHHHHHH
T ss_conf 99999986454864666888778999-9876235799876655453289999636645-76-------259899999998
Q ss_pred HHHCCCCCEEEECCCCC
Q ss_conf 86225884899818888
Q gi|254780724|r 245 IIGRIRCNVLISGGTGS 261 (483)
Q Consensus 245 ~~v~~~~nilVsG~TGS 261 (483)
.-+..+--|.|--.||.
T Consensus 185 ~~V~~GDVI~Id~etG~ 201 (450)
T COG1224 185 EGVEEGDVIYIDAETGR 201 (450)
T ss_pred HCCCCCCEEEEECCCCE
T ss_conf 37445878999825667
No 495
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=95.25 E-value=0.015 Score=36.53 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=23.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 2588489981888888899999983038
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYID 275 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~ 275 (483)
+++..+|||||.|.||||++.-|+...-
T Consensus 116 rGGs~LLi~GPsGCgKsT~~k~LsKelg 143 (670)
T TIGR00602 116 RGGSILLITGPSGCGKSTTIKILSKELG 143 (670)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7753788417558844789999988864
No 496
>pfam00265 TK Thymidine kinase.
Probab=95.24 E-value=0.074 Score=31.61 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=52.5
Q ss_pred CEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCE
Q ss_conf 48998188888889999998-303876767999642131256787567787416666530--001899998752059988
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLT-RYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEG--EITMRDLVKNCLRMRPER 328 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~-~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~--~~t~~~ll~~aLR~~PD~ 328 (483)
.-+|+||..|||||-|-..+ .+.-...+++.|--...-+.. .+.+ .++....-... ..+....+...+-.++|+
T Consensus 3 L~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~R~~-~~~i--~Sh~g~~~~~~~~~~~~~~~~~~~~~~~~dv 79 (175)
T pfam00265 3 IELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYG-TGKV--VTHDGISMEAKLIKTSLLDDIKDIISNTIHV 79 (175)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCEE--ECCCCCCCCCEECCCCHHHHHHHHHCCCCCE
T ss_conf 999992517789999999999999879939999461127789-9969--8899981145673653199999864368789
Q ss_pred EEECCCCC-HHHHHHH-HHHHCCCCEEEHHHCC
Q ss_conf 99657587-9999999-9987397010200047
Q gi|254780724|r 329 IILGEVRG-PEVLDLL-QAMNTGHDGSMGTIHA 359 (483)
Q Consensus 329 IiVGEiRg-~Ea~~~l-~A~~TGH~G~ltTlHa 359 (483)
|.|-|.-= .+..+++ ...+-|..=..+-|-.
T Consensus 80 I~IDEaQFf~~l~~~~~~~~~~~~~Viv~GLd~ 112 (175)
T pfam00265 80 VGIDEAQFFDDIVEFCETMANLGKIVIVAGLDG 112 (175)
T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 998337752648999999996799499987503
No 497
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.19 E-value=0.018 Score=35.86 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=5.8
Q ss_pred HHHHHHHCCCCCHHHH
Q ss_conf 9999885656335885
Q gi|254780724|r 116 DLCNDILGYGPLQPLI 131 (483)
Q Consensus 116 ~i~~e~~glGpL~~ll 131 (483)
..+..++|+..++.+.
T Consensus 173 ~ai~~LLGl~~~e~l~ 188 (650)
T TIGR03185 173 EAIEVLLGLDLIDQLA 188 (650)
T ss_pred HHHHHHHCCHHHHHHH
T ss_conf 9999985958999999
No 498
>KOG1532 consensus
Probab=95.18 E-value=0.019 Score=35.80 Aligned_cols=61 Identities=30% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 62258848998188888889999998303876767999642131256787567787416666530001899998
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVK 319 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~ 319 (483)
+++....|+|.|--|||||||+.-|..++.....- +.++.+-.-..++.-...++++|-++
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-------------pYviNLDPAv~~vpy~aniDIRDtVk 75 (366)
T KOG1532 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-------------PYVINLDPAVRNVPYPANIDIRDTVK 75 (366)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC-------------CEEEECCHHHHCCCCCCCCCHHHHHH
T ss_conf 55687079999447788413999999998623699-------------80886788885488866775665430
No 499
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=95.17 E-value=0.035 Score=33.87 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred EECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCC---CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 40576546678886506998899999898622588---489981888888899999983038
Q gi|254780724|r 217 RKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRC---NVLISGGTGSGKTTLLNCLTRYID 275 (483)
Q Consensus 217 Rk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~---nilVsG~TGSGKTT~L~al~~~i~ 275 (483)
||+++..|. +++. .+.+..-|+.+++.++ --|+|||-|.||||..+-|+..++
T Consensus 6 RKyRP~~F~--d~~G----Q~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLN 61 (363)
T TIGR02397 6 RKYRPQTFE--DVIG----QEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (363)
T ss_pred ECCCCCCCC--CCCC----CHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 223788611--0235----1799999999997189662345028599763558999999865
No 500
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.17 E-value=0.027 Score=34.61 Aligned_cols=38 Identities=32% Similarity=0.507 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC----------------CEEEEECCHHHC
Q ss_conf 89981888888899999983038767----------------679996421312
Q gi|254780724|r 253 VLISGGTGSGKTTLLNCLTRYIDKDE----------------RIVTCEDTAELQ 290 (483)
Q Consensus 253 ilVsG~TGSGKTT~L~al~~~i~~~~----------------rivtIED~~El~ 290 (483)
+.|.||+|.||||++++|........ |+--||-+-.++
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi~ 95 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDIN 95 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHH
T ss_conf 999898997788999999999854437557888799946842689997486099
Done!